| mature miRNA: TTTTGGAACGGAGGGAGTACT species: Avena sativa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|50356800|gb|CN815440.1|CN815440 HRO4509_F12_K23ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena sativa cDNA clone HRO4509_ TTTTGGAACGGAGGGAGTACT EST sequence (targeted fragment marked with yellow): CGGCACGAGGTACGTGTCGGAGGAGGAGACGACGCTCAAGGACAAGTACCCCAGAGACCACTACGTGTTCAAGGACCCCATGGCCATCCACGCGCAGGGATGGCCGGGGATCGCAGAGATCATCATGAAGCAGGACGTCGTCGTCAACATGACCAGGTTCAAGCCGTTCCTTCTCCAGGCGCTCGACCAGCTGCAGGACTAGACCGTGCGTTCCTTTGGCTTGTGATGTCCCCTCCCTTTGGGACACATGCATTTCCATAGAGCACAAGTGGGATCGATCTAGCAGAGTTTTCATTTTGTAAGTTCAGTAAAAGTCAATTTATTTCATTGCTGTTGTATACTACTCCCTCCGTTTCAAAATATAAGATGTTTTAGGTTTGTG | |||||||||
gi|50361223|gb|CN819863.1|CN819863 HRO4404_H11_P22ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated leaf Avena sativa cDNA clon TTTTGGAACGGAGGGAGTACT EST sequence (targeted fragment marked with yellow): GAGGCACGCCTAGATGTTTAGTTCCTTTGCTTTTGAAGAATACCTGGAAGCTTTATTTTTGTGGAGTACAAGCCCTTTCCAGGTTTGAATACCCGTGCTTTGCTACGGAACTGTAATGTCGTAGAGGGCTTGAATCCCAGTGCTGCCCTCTCATGGACGAATGCCTAGAAAATCTTCAATAACGATGGCTGTGCATGGGACTGAAATTCTTCAGTCTTACTCCCTCCGTTTCAAAATATAAGATGTTTTAGGTTTGT | |||||||||
gi|50358584|gb|CN817224.1|CN817224 HRO4454_C03_F06ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf Avena sativa cDNA clone HR TTTTGGAACGGAGGGAGTACT EST sequence (targeted fragment marked with yellow): CGGCACGAGGCCTCCGTCGAGAAAATCGGAGACCTGACTTACTACAGCTATGTGCTGGAGACTCCACTCGCACTCACCGGTTCTCACAATCTGGCCAAGGCTACAGCCAAGGGGAACACCGTGGTGCTCTTCGTCGCCAGCGCCAGCGACAAACAGTGGCAGTCGTCCGAGAAGGTTCTCAAGGCCATGGTAGACTCGTTTCAAGTATGATTGCGGGCTTGCCCCTTGGCAGCTGGGAGATCTGGAGTTGGGTCGCCTATCTGAACCCTGAGGTACTTGGACACGAGAAGCTACTCCCTCCGATCCAAATTAGTTGACTTAGATATGACTAGATTCGATTGTATCTAGACATGATTTAGTATTAAATATATTCATATCTTGTTAAATTTGAGTCAACTAATTTGGGTCGGAGGGAGTAGTGTTTTTGAAGCTTGGACCACTTGTAAAGAGATACGGAGTACTACTTATCTACTAAGGTGA | |||||||||
gi|226992737|gb|GO597851.1|GO597851 ASAEN3NG-UP-099_A08_30JAN2008_064 ASAEN3NG Avena sativa cDNA, mRNA sequence TTTTGGAACGGAGGGAGTACT EST sequence (targeted fragment marked with yellow): GGCTCTCATCATCGGGTTTGATCCAGCCGAAGCAGATGGCATGCGGCCGCCGGTCTCACTTCCGGCTACCTCGGCGGCGGACGCACGCTGCAAGCACCTCTAAATCGCGTAATGGGTAAAGATTTAGTCTTCTGAGCCTTGGGAATTATCTGCTAATTCAATCTGCCAACAGAAAAAGTTGAGATATATGATACCAACATATGATATTGAAGAAATGGAAAACACGGAGCAGAGAGATATGGCGGGCAGCCGAGGAACAACGTGTGCCCTAAGTGTGCCCTCCGTTTCAAAATCTACACACTGATCGACCAACAACAATGTGTGCCCTAAGTCGTCCCGCTGAAGAAAACATGTGATGATTTCTCCAGGTTTCATATAAAGTTGCCGAATCAAGTTATTGTCAGTTTGCCTGGAAAATCGCCTCTTTCCAAGAGGAAGCAAACTGCCAATTCTGTGGATTTTGACTCGGCAATTAGAACTTCACAGCCTTGGAAATCCACCGAGGATGGCTTCTTTTACAAGTCAAGTTTTCTGGTGTTCCACTTGCAATGGTGTCCATGTCAAAAAGTTTAATTCTGCATTGTTAGTGCCTATGGTTCTAGGCATTTCAGCTGCAGTAGATGTCAGGTTAAGGTTATGCCGCACTGGACAAACCCTCATGACCGGCATCATCTGCTGG | |||||||||
gi|50358853|gb|CN817493.1|CN817493 HRO4466_C10_F20ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf Avena sativa cDNA clone HR TTTTGGAACGGAGGGAGTACT EST sequence (targeted fragment marked with yellow): CGGCACGAGGGTTAGTTCTGGATGACTGCAAGACTCATCATGTCGGTCTGTGATGGTGGTCTCTTGTGTTTGTAACTACCGTAGTATAGCCCAGGATTATGCACCTTCCTGCCATGGTAGAATTAGTCCAGCCGCAGCTACGTAGTGAGTATGATGTGCAGGAGCATCTCATCTCGGTTGCTAACGGGTAATCCTGTAGGAATGACAGCGTAGCTACTACTCCCCCCGTTTCAAAATATAAGATATTTTAGCTTTGTGAAGCAAATGTATCTAGACTACTTTTAGTATATAGGTTCACTCATGTTTAGAATGAATCTACACACTAAAACAAGTTTAGATACATTTTCTTTACAATCCTAACTTTATATTTTTTTGGAACGGAGGGAGTACTGATCAACTCTGATGGGATGAAGTCCTGCAAAGTGTATTATTTTCCTGGTACTTCCAAATATGCATTCATTTGTCTGCGGTAGGCTAAAAAAAAAAAAAAAAAA | |||||||||
gi|226983106|gb|GO589486.1|GO589486 03-ASAEN3NG-UP-004_G12_24APR2007_084 ASAEN3NG Avena sativa cDNA, mRNA sequence TTTTGGAACGGAGGGAGTACT EST sequence (targeted fragment marked with yellow): GTTACTCCCTCCGTTTCAAATTAACTCGAGCAACTTTTTCTAGGTATTTTAGTACTATGTAGATACATATGTTTGGAAACAAGTGTTGCAGATTTGTCTAGATACATGTGTATCTAGACCGTTTTAGTGTGTAGAACATGCATATCTAGATAAATATGCGACACTTATTTCTAAATGTAAGTAGTATGTATCTAGACAAATGTGCGTTAGTTAGTTTGGAACGGAGGGAGTATATTTGTTATGTGAACCACTATTATGTATAAATAATCAGACCAAACGTTCTATTGTAT | |||||||||
gi|50362743|gb|CN821383.1|CN821383 HRO4424_F11_L22ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated leaf Avena sativa cDNA clon TTTTGGAACGGAGGGAGTACT EST sequence (targeted fragment marked with yellow): CGGCACGAGGAGTCAGCGCTAGGCACTATCCACAGCATTGTGGTCTTAGCCATGGTCTGCAAGATGAGGATGTCGTCCAGATAGTAAAGAAGAAGGAAACGGACGAGGGCGGGCGAGGCCGTTTCAAGTCACACACCAATGCACCTGATCGGATATCCGACAGGGTGAAGAAAGCTCCTCTGAAAACATGATCCGGTGGTGAGTGGACATCTCTGAATGGATGATGATGTGGAATTTGGACATCTCTGAATGGATGATGATGTGGAATTAGTTGAACCGGATGCTACTTTTTGCAACCCTATGTTCTGCCAGAAGGGGCCATACTTGAGCACCTAACCATCCACCATATGAGAAATGTTGCTTTTTATTCAGGCAGTAGCTCGTGCTATATATGAGGAGGCTTGTGTTGCCATACGAATGTTTTTGCCAGGAAACTTCGCCAAAAGGAGTTGTACTTACTACTACTAGATGCTACTCCCTCCGTTTTAAAATATAAGATGTGAAAGGAGTGTAAAAAA | |||||||||
gi|50362647|gb|CN821287.1|CN821287 HRO4423_F03_L05ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated leaf Avena sativa cDNA clon TTTTGGAACGGAGGGAGTACT EST sequence (targeted fragment marked with yellow): CGGCACGAGGGTTTGGAAATTCTGGAGAGTATGTTGGGTTTGACCCAGCAGAGCCTACTTCACGAAGTGGCGGTAAAGCCGTAGCAGTTCAACACATACGACAGAAGTGTGGTTACAAGACACTCGTTATGATTGGAGATGGTGCGACTGATCTTGAGGCTCGCCAACCTGGTGGAGCAGACCTATTCATCTGCTACGGAGGGGTGCAGATGAGAGAAGCAGTGGCAGCAAAAGCAGACTGGGTTGTCTCTGATTTCCAAGAGCTGATGGCTTATTTGGCATAGTACCATTCTGAACTACAGTATGAGTGGTGCGAGTTTTTTCTATGATTTGGTGAGTAATTAAATGCTCATGGAAATGCTTTCCAGGCTGTATGTCCAAGCATGTTTGACGGTGGTATTTTAGTTAAATGGCTCTATTTCTAGTTCAGGAGAAGATGTTGGATCTAATCATCTGCCTCGCCATACCAGGATGACAAAAACATACACACCATCGTTTCAGGCAATTGGGTTTTTTCACTTGAATTTGGTTCGATTTTTGTAACGCTCTTCTGGTGTAATGATGTGCTGATGATACATACTCCCTCCGTTTCAAAATATAAGATGTTTTAGGTTAAAAAAAAAAAAAAAA | |||||||||
gi|226982230|gb|GO589042.1|GO589042 ASAEN2NG-UP-041_H02_21DEC2007_002 ASAEN2NG Avena sativa cDNA, mRNA sequence TTTTGGAACGGAGGGAGTACT EST sequence (targeted fragment marked with yellow): GGAGGACAGCTTTGTGTTCACGGTGGAAACGACGGGCGCCCTCACAGCTTACGAGCTGATTATGAATGCTATCACGGTTTTGAGGCAGAAGCTGGACGCTGTTCGGCTGCAAGACGATGATGCCGATCTTGGCGACCTCGGTGCCCACCTTGGTGTGTAGGCTTTATCTAACTAGCTGTGTTAGTGGCAGGACGTGATGCCTCCTTTGGATCTTCAGGTTGATGTCCCAGGTACCAGAACTCTAATCGTCTCGTATGACTGCTGTGTTTGATGCCATGACCTGTGTGATGCAACTCTGTACGTTGCCCCCAAGTAAGAAGAAACCATGGACACACACTAAGCTAAGCTAGATCCAGTGTGGAACAGATGGATGGATCGCTGGTGATGCTTGTGTGGTACTCCCTCCGTTTCAAAATATAAGATGTTTTAGCTTTGTG | |||||||||