mature miRNA: TTTTGGAACGGAGGGAGTATT species: Triticum aestivum database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
Predicted miRNA targets | |||||||||
gi|222372283|gb|GH732451.1|GH732451 OV.107P14F010206 OV Triticum aestivum cDNA clone OV107P14, mRNA sequence TTTTGGAACGGAGGGAGTATT EST sequence (targeted fragment marked with yellow): CCCACGCGTCCGCCCACGCGTCCGTGTCCATGCTGACCGCCTTGTTTCCGTTTTCTTTTCCCCATTTTAGAGTAGAGATGGCAGTGGAATCTTGTACCTATATTACTCACAGGAATGACACTAGCTATGATGTACTCCCTCCGTTCCAAAATAAGTGTCTCAATTTTATACT | |||||||||
gi|222370671|gb|GH732075.1|GH732075 OV.102K22F010202 OV Triticum aestivum cDNA clone OV102K22, mRNA sequence TTTTGGAACGGAGGGAGTATT EST sequence (targeted fragment marked with yellow): TGAATATTCTACACGCTACAATCACCCTCAACTTTTTGTAGCAACATCACTACTAGTTGCACTTGCTGTCCTTGGTGAGTATTTCTGTGCATGCTGCTATGTTTCATATATCTTTTTACACGTTCAGAACTTCAGATCAATCGACCATATCCCTTAGGAACAAGCAGATATTTGATTCATGTAAGCATACTATATTTGCAGCTGTCACATCAAAGACTTGTGTAGGAATGAAACAGTTTTTTAGTTTGTGTATTCTTCTTCTGTTGGCATCCATTATGTTCCATCACAAATAATACCTCCGTTCCTAAATATGAGTCTTTTTAGAGATTTCAATATGGATCACATACAAATGTATATGGACCTAGTTTAGAGTGTAGATTCACTCATTTTGCTCCGTATGTAGCCCATATTGGAATATCTAAAAAGACCTATATTTAGGAACAGAGGGAGTACTTGACTAGTGTTAAAAAACACCTGTGAAAGCACCAAGGTTGTATACTCTTTAATAGTTTAATATCCTTAACATTCACTCTCCTTTTTATTTACCATTGCATTATGTCAATTAAGACAACACAGAAGATAAGCTGCATTATACAAACTAAAAAAACTCGACCAATAGGCATTAGCACCCAGGGTGTTTTTTAATAGAAGCAAAGCACCCTGTGAAGGCTGCACCTCANACGTGGGTGGGCAA | |||||||||
gi|222368579|gb|GH727641.1|GH727641 G550.114A15R010903 G550 Triticum aestivum cDNA clone G550114A15, mRNA sequence TTTTGGAACGGAGGGAGTATT EST sequence (targeted fragment marked with yellow): AAACGGGGAAAGAAACGGGATGGTTCACTTAAAAGCATCAACTCAATTCAAAAGTCTAGGAAGCTTATCTGGTACTCTCTCCGTTCCAAAATAAATGACCAACTTTATACTAACTTTAGTACAAAGTTAGTACAACGTGGGGTCATCTATCTATTTCAAAACGCAGGGAGTACTCCAAAAGCCAGGTTTTCCGAAAACTACATTATATAATCCATGGACAATTGGACATCTAGCTTCTGATGGGAAAGGCTTTTCTAAAATACCTTTCCACGCATCAAAGCACATGAGCAGGAAAGCGGACCTAAACGGGATGGGGACACACAGGGATGCAGTCAGGGGGATGAAATGATGGGCTCACCAAAGATGGGATCGTACGGCCCTCCAAAGGCTGGCACAAAAAAACCCAAAAAGCCCTCCAGGAAAGGGCAGCAACAACAGCAGCAGTTTGGATTTCAGTCATTTTCCGTTAGGGCTAGGCAAAGGTCTCCGACAGGTGGGAAAAACCCAGCGGACGCGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGGGGGGCTAAAGGGGGGGG | |||||||||
gi|222371663|gb|GH732943.1|GH732943 OV.114P09F010312 OV Triticum aestivum cDNA clone OV114P09, mRNA sequence TTTTGGAACGGAGGGAGTATT EST sequence (targeted fragment marked with yellow): CATAATAACGCATCCGGTGCTGCGAGTTACTCCCTCCGTTCCAAAATAAAGTTAGTACAAAGTTGGGTCATCTATTTTGGAACGGAGGGAGTATGTGATAGAATTGTGTTTGTCACCACCTTTGTTGAAGCAGGCGATATTTTCAGTACCAACAGTACAAGCATCCTCGAGGGTTTTGTGGTCTATAATCTATCAAGAGGTCGTTTGTTGC | |||||||||
gi|143795074|gb|CJ961002.1|CJ961002 CJ961002 Y. Ogihara unpublished cDNA library, whchul Triticum aestivum cDNA clone whchul24p2 TTTTGGAACGGAGGGAGTATT EST sequence (targeted fragment marked with yellow): ACTGTNGGATGCNAAGGACCACACAAAGGATATCAAGTTGTTTATTAATTCACCTGGAGGCTCCATTACTGCAGGAATGGGGATTTATGATGCCATGAAATTTTGCAAGGCTGATATCTCAACTGTTTGCTTTGGATTGGCGGCTTCCATGGGTGCATTTTTGTTAGCTGCTGGGACAAAGGGAAAGAGATTTTGCATGCCAAATGCGAGAATTATGATCCATCAGCCATCAGGGGGAGCTGGTGGGAAGGCCACAGAGATGGGATTGCAGATAACAGAAATGCTCTATGAGAAGATAAAGATCAACAAGATAATGTCAAGGATCACTGGAAAGCCTGAAGAGCAGATTGACGAGGACACGAAGTTTGACTGTTTCATGAGTCCTTGGGAGGCCAAGGATTATGGAATAATTGACAGCATTGTAGATGAGGGCAAACTTGGATTGGTAGCTCCTGTATCGGGAGCTGTGCCACCCCCAAAATCACGTGTGTGGTACTTGTGGAACGCTTCAGGACCAACTAGAAAAATAATGAAAAATCTACCTTCAGAGGAAAAGCTCATTCGAAATGGCAATGGCAGTGTAAGTGGAGCTGATGGAATGCTGAAGGAGGCCTCATCAACTTGAGATATGTCTACCAGCTTACAGCATCACCATGGGTTTAGGATCAAAGATGTGGCTTGCTATACAGGCCAGAGCATACAATGTGCAATTTTCAGGGTGCAGGTCTGTATGCCTTGCCGGTACTCGAAGATTGACTGTAGTGCTGTTTGTATGCTGTATTGTACTCCCTCCGTCCCAAAATATAAGAACGTTTTTGACATTATGCTAGTGTGAAAAACATTCTTATATTTTGGGATGGAGGGAGTATTATTTTTCCCTGTATACCGGT | |||||||||
gi|222365668|gb|GH721896.1|GH721896 AZO2.110O07F010115 AZO2 Triticum aestivum cDNA clone AZO2110O07, mRNA sequence TTTTGGAACGGAGGGAGTATT EST sequence (targeted fragment marked with yellow): GAAAAAGCTGAGTTATTCAGCCATATATGAACTTCCTAATTCCTGTTTCTTGTGGTCACATCCAAGAAATCTGCAATCAGATGACACTAACTGGTTTCTGCTGTCTCTGGATCGATTATGCGATCAGATACATGTACTAGATACTACTCCCTCCATTCCAAAATACTTGTCGTGGTTTTAGTTCAAATTAAAAGTAAAAGGAACAAGAAATTTCAATTTATCCTCACCTGAATTCCTGTCTTGTTCATCTGCTGCTCCAAAGGCAAAGCTCAGCACCTATGCACTCAAAGGTGATCTGCTGTAAGCTCTACATCTCTGAAAGCCAAAATGCGGCTGTTGTCGATGCCATCAGCCGCATAGGCCAGAAAGACCCTGAGGTGGTTCTACTCAACAAGTTCGAGGATGAGTACTACAACCGTGTCCGCTACACGCTTGTCTCCTATATTAACAGTGAAAGCGCAACTGGTGAAGCTGTATTTAGCCCAATCAGGAAGGTGCTGCTGGCGATGATCGAGGCTGCATTTTCAGCCATAAACCTCGAAGTGCACTGTGGAACTCATCCAAGGATCGGTGTCGTCGATGACATTTCATTCCACCCCTTGACTCAAGCGGNCACAATGGAGGATGCTGCTCAGCTGGCTAAGCTGGTAGCCTCTGACATTGGCAATGGCTTGCAAGGTGAGNTCCTCGACAATATCTTCATTGAC | |||||||||
gi|143792937|gb|CJ958667.1|CJ958667 CJ958667 Y. Ogihara unpublished cDNA library, whchul Triticum aestivum cDNA clone whchul18d1 TTTTGGAACGGAGGGAGTATT EST sequence (targeted fragment marked with yellow): TTTATTAGTTTTTCCTTCAGTTTGGTATGACAGAAGCAATCTGGAGGTGTGTAGTTAGCTCGTCTAATTCAGAACCACTTTAATTACTACTCCCTCCGATCCAAAATAAATGTCGCAGTTTTGAACAACCTTAGTTCAACGCAGCGACACTTATTATGGATCGGAGGGAGTATCTGTGAGCAGCACTGTCACTTCTTGATATGCAAGTGCTTTCCTGTAATCTAGTAAGGTAAAATGAACATAGTTGAAAAGTAATTCCTCATTAAGCTTCTTGTGTGCACAGCTATACCTTCTGTTTGTTTAAAATTTGGAAAGTTAATCGTTTCCCTTTCTCTTCTTTATGAACTGCAGAGGCTGGCGCGTCCTCCTCTGCTCTTTTGGAGGATGGTAAGGTTGTCGAGAAGGTATTGCCTCTCATGGGCTCGGGCTCTGGCATAAGGCCGGGCATCGCCCCAAATGTCAAATTCGGAGGGTCCGGATCATACCCCGATCTTCCCTGGGTATCCACAACCGGGACTGGACCAAGTGGCAGGACCATATCAGGCGTAACATACAACTTCGGCAGAAACGAAGTGAAGATTGTGTGTGCTTGCCATGGCACACACATGACGCCCGAGGAGTTCACGCGACACGCTAGCGTGGACGCCACGGGCCAGGAGAACAATGCTACCATGTCGGCGTTTCCTGTCGGGAATCAAGCAGCATCAGCCCAAAACTAATTTGGTGGCCTGCGTGCCGGTTTCATAGTGTGCTTGATGTTCCCTTTGTGTCCATATCATCAGTTCAGTATATTGTTGCTCTGTTGATTCAAACCCTATTGATATACATTATGTAGANCATGTGTCATGTTGTAACTTTGGCTCCCATTGTT | |||||||||
gi|289682403|gb|GD186489.1|GD186489 Tax21-002-E10-A-082.g Triticum aestivum developing seed heat stress forward subtractive libr TTTTGGAACGGAGGGAGTATT EST sequence (targeted fragment marked with yellow): GCAGGAAGCTATTTCTGTGCCCTGGAAGGATCTGTCCCAAAAAAACAACTAAAATTGTACTATGCCATGAGAGTCTTAGAAAGTTATGAATCATCTGAAGGGCGTGACCCCGGTGAGACATCACTTTCTGATCTACCTGCAGTTTTGGCTCTGAGGAAGGATATGTGTGATAGAATGTCTTTGGATGAGTCTCGAATTCCTACGTCTCTCCTGGAACGGCTTCTAGCAGCTGGGAAAAAGGAACATCCTCCTGTATGTGCAATCCTTGGTGGCATTCTTGGTCAGGAAGTGATTAAGTCAATATCTTGTAAAGGCGATCCGATCAAGAATTTCTTTTACTTCGACGACGCTGATGGTAAAGGGGCCATGGAGGACATCCCCCCAACTCCTGAAGACTGAATCACGTGATACGTACTCCCTCCGTTCCAAAATAGATGACTCAACTTTATTTTAGAACGGAGGGAGTAACTCTCATCCGACATGGCTCGCTGATAATTGTACCCAATCATTAGAACTGAACATGTGAGAACTCTAGATCGGTGGCTGAGGCTGGAAACTTAACTTAGCATTTTAGCGTTTTTGTCACTGGTACTTAGGAGGTGTTTGGTTCGCCGATTTGTAACGTCATCTGTTTACGCTGGTAAGGGATAACGTTGAATCTAAAAAAAAAAAGT | |||||||||
gi|222361846|gb|GH725488.1|GH725488 G118.111M10R010926 G118 Triticum aestivum cDNA clone G118111M10, mRNA sequence TTTTGGAACGGAGGGAGTATT EST sequence (targeted fragment marked with yellow): CGACCCAAAGATACGTGGAACGTCCCACGCACCTACACCACATTATCTAAGTAAACAATTATAGGCCACAAAGTTCCTGATTACTACTTCCTCCTTTCCAAAATAAGTGTCGCTGATTTAGTAAAAAGTAGTTGGGTCGGAGGGAGTACCAGACAGGAATAACATGAACAACCGTGAAATGCCAAAACAGCAGCAATGGTTAATTGGCAAGAAAATTTAGTGACCGGCAACCGTTATCGCCACCCTTCTCGATACAAAACAAATATCACATGGATGAGTTAGCCGAGGCAGACATTGATCTTAGCAGGTCAGTAGGGCTGATGTCGGCTTCTATTTTTCTTTTCTACGCGTGATACAAGCGAACTGGAGATCCACGACTTCTTCGTCGCTGTGACATCATCCGAGCGCCAGCAACAAAGACGGCCATCTTCACCTCCTGTCCACCCAAAGATACCTCTGTTCTGGCCAAGGCTCTCAAGGCTGCTTCCAGCTGGGCATATGGTCCTGATAACTCCTGTGTGACCTCCTTCCAGGACAGCCTCCGCCAAACCAATCGCTCCCGCGGGATCGTTTTTCACAGGGAAGTAACCTAGTGTCCCCTCACTTGTGCCGCCGATCGCCCATAACCGGTCGTCAGGCAGAGAGTAGTGGCAGTCGACAAAGTAGTCCAATGGTCAAGGGTTCCACTTTGTCACT | |||||||||
gi|222363492|gb|GH726041.1|GH726041 G118.102M01R010922 G118 Triticum aestivum cDNA clone G118102M01, mRNA sequence TTTTGGAACGGAGGGAGTATT EST sequence (targeted fragment marked with yellow): CTAGGAAAACAAAATCCTTTGTATTACTCCCTCCGTTCCGAAATAATTGTCGTTGGGGGCATCACTCCGACCAGGTGAAATAGTGTGAAAGTACAATACTACCCCCGATTTGAAATCCATCGGGAGGGGTTTTCCTCCGTCGCTCCTCCCCTACGCCAGGCTTCTCCGCCGTCGCTGCTCCCTTTCGCCGGGCTCATCCGGGGTCCTTCCCCGCCGGGGTCCGCAGCTCCCTCATCGGCCGCCCTTCCACGCCAAGGTCCGCAGCTCCCTCGCCGGCCGCCCTTCCCGCCGGGTGCCTGCTCCGCCAAAATTTCGGATCCTTCGCTGGTGGCCAAAGATCCTTCGTCGGCCGCCTCCCCCACTCCAATCAAGAGCTCAAAGTCAGCCGTGGGGCTGTCCACTTCTGGTGCTCCTCTCGTCTCTGCTCCTCTCCACTCCAATCAAAAGAATCTGGAATTGATCCAAAAAAAAGGTCAATTGATGTCAATTTGATTAACTAAATCATCCAAAAGCCAGAATGATAAGTCCATATGCTACTGTTGATCCCAAGACCGGAATGACAAGTTCA | |||||||||
gi|239862165|gb|GR304550.1|GR304550 WRIS_4924 cDNA library of a compatible interaction between stripe rust (Puccinia striiformis TTTTGGAACGGAGGGAGTATT EST sequence (targeted fragment marked with yellow): GTTGGTACCCGGGATTCGGCCATTACGGCCGGGGGGACAACAGAAAAGACGGAGACGTAATGAAGACACAAAGAACTCAACACCTGCTGAAACACCAGCGGAAGCGACATACAATATGTTAAAACGAAAGGGACTTGGGTCAAAAATCAATGTCGAAGCAGTTGGTGGATTGTATAATACTAAAGATGAAGCTAGTGAAGCAAATGAAAAAGGAGACATGGGCTTTGATGGAGAATATGCACATGACACTGGTGATGGTGAAACAATAGAAGGTGGCTATGACTATGCTGATTACAACAACGATGGCTATGCTGATGGTGGTGATGCTGGAGCCTACGAGGATTACGATGGGATTGATTACTAATATAGTACTAAAATTCTGAGGAAACAGCCCAACAAAATAAGTCTTGGTCAACCGGAAGGGGTTTATTTGGACAATGTATTATACTACCTCCGTACCAAAATATTAGCTGTTTCTTTAGGCGAGTTTTGTAGCACAAAGAAGTTCCAATTAATGATATACCGAGACGT | |||||||||
gi|143798968|gb|CJ964889.1|CJ964889 CJ964889 Y. Ogihara unpublished cDNA library, whchul Triticum aestivum cDNA clone whchul37a1 TTTTGGAACGGAGGGAGTATT EST sequence (targeted fragment marked with yellow): AGTCGGTGNCAGGCCGCTGACAGGCCTNTTCAAAGNNCAAGTCGAAGAGGAGAAGGNTGGACTCAAGACCGACACATTNTTNGAAACAAGCGTTGTTGGNGTATATNCCATCGGTGATNTGGNGACTTTCCCCATGAANCTGTACGACGAGCCGAGGAGAGTGGAGCACGTNGACCATGCTCGGAAATCAGCCGAGCAGGCAGTAAAGNCGATCAAGNCCAAGGAGTCCGGCGAGTCTGTGGCGGAGTACGACTACCTGCCNTANTTCTACTNCAGGTCGTTNGACGTCGCGTGGCAGTTNTACGGCGACAACGTTGGCGAGNCGGTGCTGTTCGGGGACAACGACCCAGCGGCGGCCAAGCCCAAGTTCGGCACCTACTGGGTCAAGGACGGCAAGGTCATCGGTGTGTTCCTAGAGGGCGGCTCCGCCGACGAGAATCAGGCCATCGCCAAGGTCGCCAGGGCNCAGCCGCCGGTGGACGACGTGGAGGCGCTCGGCAAGNAAGNCCTTGATTTCGCCACCAAGATCTGAAGATTCCTCTATCTATCGACGCGTGTAAATTTTGTGTTTGTCCCTCCCTGCCGATGCTTCCTGCTACTCCCTCCGTTCCAAATTACTCGTCGTAGTTCCTAGCTCANAAGTNTGATTCGATTNNTCATTNTGGANTTTGATGGTGT | |||||||||
gi|143800839|gb|CJ966760.1|CJ966760 CJ966760 Y. Ogihara unpublished cDNA library, whchul Triticum aestivum cDNA clone whchul5d13 TTTTGGAACGGAGGGAGTATT |