miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse




mature miRNA: AGAACCGAACCGAACCGAACC
species: Actinidia deliciosa
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|195264293|gb|FG470564.1|FG470564 021008KALA012537HT (KALA) Dormant kiwifruit buds three days after hydrogen cyanamide treatme

AGAACCGAACCGAACCGAACC
|||||||||||.|||||||||
TCTTGGCTTGGTTTGGCTTGG

EST sequence (targeted fragment marked with yellow):
ACTGGGTACTTTCGCAAACACACACCCCCTCACTTTGCCGCAATGGTTCTTGAGCGTTTCTCTCGGGTTCCTCGGCATGCCTATTGCTGCTGCCATAAAGATGATCCCGGTGGGGTCGACATAAATATCGGGTGAAGCGAAACAGGTACTTGGCTAATTTTTTCTATATGTTCATCAACGATGAAAGAGACTTGCCTTTGCGCCCCGTATTTCTGTAGCAGCACTATGTAGGGTATTTGATAGGATTTCTGATATAGGCTGAAGATCTCCCACGGGTAGACAATCGCTTGTAAAACAAATCTCTTGGTCTTTTCTTTTCTGTGTTTAGGCTAGGGGTGCACAAAAGACCAAAAGAATCGAGAACTGAACCAACCCGACTTTATTGGTTCGGTTTGGTTCGGTTCTACCATGTTCATGGTTCGGTTCTGGGTCTAAAAATTGTATACCTGAACAATTCGGTTCGGTTCGGTTCTCGGGTCTGTAAGATTTTTTTATCCAGAACCGAATAAGGAATCGAAGTCTAGACCTGATCATATAGTAATACAATACGCTCACCATACACTATTATTGCTTATGGTGGCTT



gi|195197028|gb|FG449067.1|FG449067 010530KAFB002559HT (KAFB) Actinidia deliciosa buds 3 days after hydrogen cyanamide treatment

AGAACCGAACCGAACCGAACC
|||| ||||||.|||||| ||
TCTTAGCTTGGTTTGGCTGGG

EST sequence (targeted fragment marked with yellow):
GTAGGAAAATAACAAAAAAACTTACTTTCAGAAAAAACAAAACAAAAAACTTATCTAATTTAATCCTTTGCATTATCAAATGAAATTTATTGGGGAAAAAAAAAACAATTTTCAGATTTATTGGATTATATATCAACCTCTATATAATTCAGAAATTTTTATTAGTTCACATATCTTTATACTAGGGGTGCACAAAAGACCCGAAAGACCTGAGAAACGAACCAATCCAATCTCATTGGGTCGGTTTGGTTCGATTCTACCATACCCATGGTTGGGTTTTGAGTCTAAAAATTGTAGACCCAAACAATTCGGTTCGGTTCTCGGGTCTGTAAGATTTTTTTACCCAGAACCGAATCGAACAAGGAACCAAAGTCTAGACTCGATTATATAGTAATACAGTGCACTCATCACACGCTATTATTGCTCATGTTATATAAATCAATTAGGGTTCTAGTCTTCCAGATTGCCGCTGTAGCCCCCCATCCCTTCAACAGCGCCTCTCTTC



gi|195286071|gb|FG452348.1|FG452348 010603KAFB006656HT (KAFB) Actinidia deliciosa buds 3 days after hydrogen cyanamide treatment

AGAACCGAACCGAACCGAACC
|||||||||||||||| ||
ACTTGGCTTGGCTTGGCATGT

EST sequence (targeted fragment marked with yellow):
GAATTCTGGATAGAAAAAGAATGTAAAATGTTTTTGATGAAAAATGGATAGAGTAATCCTAATATCCATGGGAAGTGAAAATATTTTTGTTGGGAGAAAACTAAAATAATCACGTGTAGGTGTGAATTAATGTTCTAGATAAATATGTATACGCGTGTATATATATATATATATATAATCGATTTCGGTTCGGTTCGGTTCGAACCACGGTTTGAAAATAAAAACCGGTAACCGAACCAAATTTACCAGTTCTTAATTTTTAAAAACCAGAACCTAACCATTAAACCATAGAACCAATCCAAAATGTACGGTTCGGTTCGGTTCACCGGTTTTCGGATTTTTTTGGACACCCCTACGATGCGTGATACCTACAAATTGTAGAAAAGAAAAGCATCACGTGGCCCCCTCGAGAGAAATTTTTGATTTGGCCACTGGTCTGTGCAACGTTAAGCAATACAACTTGCAAAGAAAATGTAATCCATAGAATTCTACATAGGTCTTTAAA



gi|195321640|gb|FG451981.1|FG451981 010603KAFB006222HT (KAFB) Actinidia deliciosa buds 3 days after hydrogen cyanamide treatment

AGAACCGAACCGAACCGAACC
|||||||||||.| |||||||
TCTTGGCTTGGTTAGGCTTGG

EST sequence (targeted fragment marked with yellow):
GGGGTCCTTGATTTTTTTTACCGAGACCCGACCCAAGAACCGAACCGAGAACCGAGAATCAACCCAAGACCCGAGACCCGAAGTCTAGAACCGACCATATATACATACAATGCACTCGCGCACACTTGATTATTACCTATATTATATTATTTTTTAGGAAGACCCGAAGTCCCGACCCAAACCGACCCGAACATACCCGAGAACCGAGGAACCGAACCGGAACCGAGCGGTTCGGATTGGTTCGGTTCTCGGGTCAGTTCCGAGTCCAAAAATAAGGAACCGTTGCTGGTCGGGTCGGGTCCGTGACATACCCGACCCGAACCGATCCGTGTGCACCCCTACTCAGTACTGCAGATAATTGGGTACCCAAAGAGGCTAGTGTAAACCTT



gi|195200299|gb|FG414505.1|FG414505 000512KUBA005647HT (KUBA) Hayward breaking bud Actinidia deliciosa cDNA clone KUBAA00564, mR

AGAACCGAACCGAACCGAACC
|||||||||| ||||.||||
ACTTGGCTTGGATTGGTTTGG

EST sequence (targeted fragment marked with yellow):
GTTTTTCTCCATACAATTCGATTCACATTTCAAAAAAAATGAACCCATAGCTCACTATTCGGTTCACAATATTTCATCCCGAACTGCGGTTTTTAACCTAATCGAACCAAACCGTTAGCTATCGATTATTCATGATTCAGTTTGGTTCACTAATATTCACGGTTCGGTTCGATTTAGTTCACTAATATTCATGGTTTGGTTCGGTTTGGTTAGGTTCGGTTCACTAATATGTGTTCATTTTGCACACACATTCGATTGTTCACAGTTCGGTTCGGTCCACTAATATTCATAGTTCGGTTCAGTTCAAAAAAGGGCCAAACCGTTGTTCACGGTTCGGNCCATAGCTCGGTCTTAAACCAGACCGAACCCTAGTCACCCCTAGCACACACCCAATGATTGTACTTTGAAATCTCATAAACTAAAATCCTTGTCTACAATCAAATCACAGAAGTTGGTTAAAAGATGAA



gi|195200299|gb|FG414505.1|FG414505 000512KUBA005647HT (KUBA) Hayward breaking bud Actinidia deliciosa cDNA clone KUBAA00564, mR

AGAACCGAACCGAACCGAACC
||||| ||||.|||||||||
GCTTGGATTGGTTTGGCTTGG

EST sequence (targeted fragment marked with yellow):
GTTTTTCTCCATACAATTCGATTCACATTTCAAAAAAAATGAACCCATAGCTCACTATTCGGTTCACAATATTTCATCCCGAACTGCGGTTTTTAACCTAATCGAACCAAACCGTTAGCTATCGATTATTCATGATTCAGTTTGGTTCACTAATATTCACGGTTCGGTTCGATTTAGTTCACTAATATTCATGGTTTGGTTCGGTTTGGTTAGGTTCGGTTCACTAATATGTGTTCATTTTGCACACACATTCGATTGTTCACAGTTCGGTTCGGTCCACTAATATTCATAGTTCGGTTCAGTTCAAAAAAGGGCCAAACCGTTGTTCACGGTTCGGNCCATAGCTCGGTCTTAAACCAGACCGAACCCTAGTCACCCCTAGCACACACCCAATGATTGTACTTTGAAATCTCATAAACTAAAATCCTTGTCTACAATCAAATCACAGAAGTTGGTTAAAAGATGAA



gi|195264293|gb|FG470564.1|FG470564 021008KALA012537HT (KALA) Dormant kiwifruit buds three days after hydrogen cyanamide treatme

AGAACCGAACCGAACCGAACC
|||||||||||||||||||
TCTTGGCTTGGCTTGGCTTAA

EST sequence (targeted fragment marked with yellow):
ACTGGGTACTTTCGCAAACACACACCCCCTCACTTTGCCGCAATGGTTCTTGAGCGTTTCTCTCGGGTTCCTCGGCATGCCTATTGCTGCTGCCATAAAGATGATCCCGGTGGGGTCGACATAAATATCGGGTGAAGCGAAACAGGTACTTGGCTAATTTTTTCTATATGTTCATCAACGATGAAAGAGACTTGCCTTTGCGCCCCGTATTTCTGTAGCAGCACTATGTAGGGTATTTGATAGGATTTCTGATATAGGCTGAAGATCTCCCACGGGTAGACAATCGCTTGTAAAACAAATCTCTTGGTCTTTTCTTTTCTGTGTTTAGGCTAGGGGTGCACAAAAGACCAAAAGAATCGAGAACTGAACCAACCCGACTTTATTGGTTCGGTTTGGTTCGGTTCTACCATGTTCATGGTTCGGTTCTGGGTCTAAAAATTGTATACCTGAACAATTCGGTTCGGTTCGGTTCTCGGGTCTGTAAGATTTTTTTATCCAGAACCGAATAAGGAATCGAAGTCTAGACCTGATCATATAGTAATACAATACGCTCACCATACACTATTATTGCTTATGGTGGCTT



gi|195253920|gb|FG467732.1|FG467732 011204KAKA004142HT (KAKA) Dormant kiwifruit buds one day before hydrogen cyanamide treatment

AGAACCGAACCGAACCGAACC
.||||.||||.||||.||||
GTTTGGTTTGGTTTGGTTTGG

EST sequence (targeted fragment marked with yellow):
AGAACCTCTAAAGCATGAGTCATATTGTCTCAAATTGCTTTTGCCAAATCAATCTGACTGGGATGTATATCAACTGACTCAGTCCGCTATTTGGCTGTTTTGAGAGCTAGTTACCTAAGCCACCTGAACATCCAACAATTTACATGAATTTATTAAATTTAACTAACAAATAGCCTTTGATGGAGAAAATATGACTCGTATAGGCAACCCCAATCAAATTGGGACACAAGACTAATTTGGTTTGGTTTGGTTTGGTTTGTTGACCTAAGTCAGCCTAAAGCTCATTGCTTTTTAGATCCAAATTGTTGTGACCAACATGACTTCTAAACACTAAAAACTAATGTGTTGGTTTTTTATACATGGTGGCAGTCATTTCTATTGCTCAACTTTGTCTGATGCAGGCTGTTTTTCGTGGCTTCCAAGCCCGGAGGCAGTATCGGAAGATTGTTTGGTCAGTTGGAGTGCTTGAGAAGGCAATCTTGCGCTGGCGGTTGAAGAGAAAAGGCTTTCGCGGGCTTGAGGTTTCCCCCGATGAAGCTGTTGTGATAGATCCGAAGCAAGAAAGTGATGTTGAGGCCTTCTTCCTG



gi|195248652|gb|FG414316.1|FG414316 000512KUBA005308HT (KUBA) Hayward breaking bud Actinidia deliciosa cDNA clone KUBAA00530, mR

AGAACCGAACCGAACCGAACC
||||||| ||.|||||| ||
CCTTGGCTCGGTTTGGCTGGG

EST sequence (targeted fragment marked with yellow):
GAGAACTAGTGAAGTCTTTTTTTTTTTTTTTCTCAATTTTGGCCCCAGATTTTGTAAAACTTATATTTAAGGAACCCTGGGCGTGGGTATGGGCAGGGGTGCACAAAATACTCGCCCGACCCGACCCGACGTCATTGGGTCGGTTTGGCTCGGTTCCACCATGCTTTGGATCGGTTCATGGGTCTAAAAAATGAAGACCCGTACGGTTCAGGTCGGTTCTCGGGTCCGTGAATTTTTTTACCGAGAACCAACCAGAGACTCGAAATCTAGAACCGAACGTATATACATATAATGCACTCGCGCACACTTGATTGCTATCTATACTATATTAATTTTAGGAAGACCCGAAGTCCCAAATCGACCCGAGA



gi|195283389|gb|FG448252.1|FG448252 010513KAFB001357HT (KAFB) Actinidia deliciosa buds 3 days after hydrogen cyanamide treatment

AGAACCGAACCGAACCGAACC
|||||||||| ||||.||||
GCTTGGCTTGGGTTGGTTTGG

EST sequence (targeted fragment marked with yellow):
GGAGTCTTTTGGACTCCATGGGTGAATCACTGGTTCCTTGCATTTTTTGGGGCGAAATATAAGGACTTCATTCATTTAATTGAGAGAACATAGCTTCAAATTCCAAGAACAAACAAACCTGNGAAAAAGAGAAGCATAGTTAGGGCTATTCACGGGTCGGATCGGGGTTGGGGTCACCCGACATTCGAACCGAACTGGAAGCATAGTTAGGGCTATTCACGGGTCGGATCGGGGTTGGGGTCACCCGACATTCGAACCGAACTGGTCGGGTTGGAGAAGTTTGGGCCCAATTCCGAACCAATAGATGGTTGGTCGGGTTGGATCGGTTCAGGTGGAATTTGATCGAGTTGGTGAAAAATGATAGATTTTAGTATAATATTTGTCGGGTTGGTCGGCCGAGTTGGTCGATTGAATGATCCGACACCCGAATCGAATGTGGTCGGGTTAGTTAAAATTCACCCGTTATTCACTCGTAGAGTGAGCGGGTTTGGTTGGGTTCGGTTCGAATCGATCAGGTTAGCGGGTAGATCGGTTATTTGAACCACCCTAATTAAAATGGTTGATTAGAGGTGGTAGGCACCAAAATGGTTGCTATTTATGGGGACTACTACATTTTTTTCAAAAAAATAAAATAAAATAT



gi|195208412|gb|FG442784.1|FG442784 001202KADA007523HT (KADA) A. deliciosa ripe fruit inner cortex Actinidia deliciosa cDNA clon

AGAACCGAACCGAACCGAACC
|||| ||||||.| |||||||
TCTTTGCTTGGTTGGGCTTGG

EST sequence (targeted fragment marked with yellow):
GCTCTGCTCTCGCTCTCCACAACTCACCAATTCCTCTCCATTCTAGGGGTTCGGGTTGGTTCGTTTCTCAATTAGGGTTAGGGTTTCTTCGAATCGCGTTCTGCGTACGATTTCTCTCAGGTTACGTACGTGTGATTGGAGTAGAGAGAGAGAGAGAGGAAGGCACGGTGGGGTTCGTCTGTGATCAGGTCTTCTGAAGAAGATCTGAGTTTTTGTTGTATTAAAAATGAGTGCTTCGAGGTTCATAAAGTGCGTTACGGTCGGTGACGGAGCCGTCGGCAAGACCTGTCTGCTGATATCGTACACCAGCAACACGTTCCCTACGGATTACGTGCCAACTGTATTTGACAATTTCAGTGCGAATGTGGTCGTCAATGGTAGTACTGTTAACCTTGGATTGTGGGATACTGCTGGACAGGAGGATTACAATAGATTAAGACCATTGAGTTACCGTGGAGCAGATGTTTTCATCCTGGCATTCTCTCTCATCAGCAAGGCCAGCTATGAAAATGTCTCGAAAAAGTGGATTCCCGAATTGAAGCATTACGCTCCTGGCGTTCCTATAGTTCTTGTTGGAACAAAACTTGATCTTGGTGACGATAAGCAATT



gi|195324593|gb|FG450921.1|FG450921 010602KAFB004782HT (KAFB) Actinidia deliciosa buds 3 days after hydrogen cyanamide treatment

AGAACCGAACCGAACCGAACC
.||||.||||| |||.||||
CTTTGGTTTGGCCTGGTTTGG

EST sequence (targeted fragment marked with yellow):
GGTTGGAACAAGAGGTACAGATGACAATCCATATTACTGTATATCATTTTTGTTGATCATGGAGTTCCCCTAACAGGGCCACTTAAATTAATGCCCAAAGTTATGGTGATCTAAGGAGGGGTGTTCACGGTTTGGATTTGTATGGTTTTAAGAAAAACTGCAAACCAAACCGTTCCTAACGTTTAAGGAAATTCCAAACCAAACCATTAGACCAATGAAACCAAACTGACCCAACCATAGAATGCGGTTTGGTCCGGTTTGGTTTCCCGGTTCAAAATCTATCTCTACCAATTATCTTTGCGTACCTAAGAAGTATAGAAAGTTCAACACATAAACAACTCAACCAGGAAAAGCAAACTACACGTCATCATCACAGGATGTCTGAAAATTATGAACAGCTTCTATTGTTGCCCTTTTTGTTGATGTGGTTGGTTATGCAGGATTTTGTTCTGAGCTAAGTTATTTATTAAGCAAATTACAGATTTAGTATACTTTTATCAGTTTATGTTATGCCCTT



gi|195216144|gb|FG417634.1|FG417634 000719KUBA014559HT (KUBA) Hayward breaking bud Actinidia deliciosa cDNA clone KUBAA01455, mR

AGAACCGAACCGAACCGAACC
||||||||||||||||||
ACTTGGCTTGGCTTGGCTTTA

EST sequence (targeted fragment marked with yellow):
ATAATGGATAACAAAAGAAAAATTAACTGATAAAATCTTGGATAGGAAAATAATGTGAAATGTTTTTGATGAAAACTGGATAGAGTAATCCTAATATCCATGGGAAGTGAAAATATTTTTGTTGGGAGAAAACTAAAGTAATCACATGTAGGTGTGAATTAATATTCTAGATAAATATGTATACGCGTATATATATATATATATATATATATATATATATATATATATATATATATATATATATATAATCGATTTCGGTTCGGTTCGGTTCAAACCACGGTTTGAAAATAAAAACCGGTAACCGAACCAAATTTATCGGGTCTTTATTTTTAAAAAC



gi|195286071|gb|FG452348.1|FG452348 010603KAFB006656HT (KAFB) Actinidia deliciosa buds 3 days after hydrogen cyanamide treatment

AGAACCGAACCGAACCGAACC
||||||||||||||||||
GCTTGGCTTGGCTTGGCTTTA

EST sequence (targeted fragment marked with yellow):
GAATTCTGGATAGAAAAAGAATGTAAAATGTTTTTGATGAAAAATGGATAGAGTAATCCTAATATCCATGGGAAGTGAAAATATTTTTGTTGGGAGAAAACTAAAATAATCACGTGTAGGTGTGAATTAATGTTCTAGATAAATATGTATACGCGTGTATATATATATATATATATAATCGATTTCGGTTCGGTTCGGTTCGAACCACGGTTTGAAAATAAAAACCGGTAACCGAACCAAATTTACCAGTTCTTAATTTTTAAAAACCAGAACCTAACCATTAAACCATAGAACCAATCCAAAATGTACGGTTCGGTTCGGTTCACCGGTTTTCGGATTTTTTTGGACACCCCTACGATGCGTGATACCTACAAATTGTAGAAAAGAAAAGCATCACGTGGCCCCCTCGAGAGAAATTTTTGATTTGGCCACTGGTCTGTGCAACGTTAAGCAATACAACTTGCAAAGAAAATGTAATCCATAGAATTCTACATAGGTCTTTAAA