miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse




mature miRNA: GAGCCAAGAATGGCTTGCCG
species: Bruguiera gymnorhiza
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|53826113|gb|BP951612.1|BP951612 BP951612 Bg05 Burma mangrove cDNA library Bruguiera gymnorhiza cDNA clone Bg05-18_M05 5', mRN

GAGCCAAGAATGGCTTGCCG
||||||| ||||| || |||
CTCGGTTGTTACCTAAGGGC

EST sequence (targeted fragment marked with yellow):
GTTTATAACTGTCCTAAATGGAATTTGCAATTATTTTCCTGTGCAGTTACTTGTGGTTGTATCATGCATGTCTATAATTATTTGTCAGCTCGGTATTGAAATTTCAGAAACTTTGAAAAAAAAACAAATCTAATGTTTACCCCTTATTACTTGATGTGGTAAATTTTGGGTTTCATTTTGTAGAAACAAACTTAAAGGGAAGAGGGTTTCGATTTTGATCTACTACTGGAACTGCTGGATTCAGTTACTTGTTTCGACTGCTTCAAGGTTTTAAAAAATGGGATCTCATCTGAACTTCAGGAATTTTGGTGCCACCTCTCCTGGAGAGGGCAGTGATGCCAAGCCATCCGGGAATCCATTGTTGGCTCGCCAGTCTTCTGTATATTCCTTGACTTTTGATGAGTTTCAGAGCAACTGGGGTGGAGGACTTGGGAAAGATTTTGGATCACTGAACATGGACGAGCTATTGAAAAACATTTGTACTGCTGAAGAGACTCAGGCTATGACAAATTCAATTGGTGTTGGAGAGGGA



gi|124544132|gb|DB995026.1|DB995026 DB995026 Bg05 Burma mangrove cDNA library Bruguiera gymnorhiza cDNA clone Bg05-12_O05 5', mR

GAGCCAAGAATGGCTTGCCG
|||| |||||||.| ||| |
CTCGCTTCTTACTGCACGCC

EST sequence (targeted fragment marked with yellow):
GAGAGGGGGGGAAACAAAAAAAAACCAAAAAAAACAAAACAATAAAAAACTCCTGTGCTTGGCGCCGGGGCTCAGATCTCCTTCGGGTATGTGTAGCCAGACCATCTCTTTCGACTTAGCTCCCTCCCGACTCCACGAATCAAAACTGGGGGGGATCGATAAATAGAACGCTGCCTTTACTCTTCTGACCCCCTCGACCGCACTGCCGGTCCGTCAGGAAGAACACTTTCGCACGCGACGTTGGGGGGGGGGGGGGGACCCTATCTCCCTCACCGCATGTTCTGTTGCTGGCCCGCCAATCGCCTGCATTGGCTACCGCACGTCATTCTTCGCTCATTGTCATGACCTCCAGTACCCCACTCCTCCACTCTTCACGTGCCACACTCGAGCCTTGCTGTATCGCGTATGTGTCACATCTGAACGGGTCCCCTGCACTCAAGTGCGCACCGCGACCGCTCCCACGGTAGCTGGTCTCACCCCTCGGGCCCCCCCACTGCAACCTCTACCACGTTCTGACGCGCCATACGTCCCTCCCAGAGATCCCAATGAGCCAAACGTGCTACGGACGGAACAATGAGCTTCCGTACCACAACACCTCATAGCCCATCCCTCGGATAGGGAGACAGTCTTAGTATACTGACATCCAGGACACTGATTCCCATGAGGCTCTGTTGCCACACTGCCGCCTGGCGACAATGGAAACACGTCGAACCCGCCAGCCGCTCTGTATTCAGTGGACATGACGCCCTGCGTGCTGCCTTAGGCCACCTACTCACGTCCCCCCGCCGCGCGGTATACCTCCCCCGTATGA



gi|53819400|gb|BP944899.1|BP944899 BP944899 Bg04 Burma mangrove cDNA library Bruguiera gymnorhiza cDNA clone Bg04-03_N04 5', mRN

GAGCCAAGAATGGCTTGCCG
|||||||.||||||.| | |
CTCGGTTTTTACCGGAAGAC

EST sequence (targeted fragment marked with yellow):
AAACAGTTAGACTGCCAAAAGCACGAGTCTCGCTCTAGAATCCGCCTGGTCCAGAAGGCCATTTTTGGCTCTGTAATTTGCGTGATTGGATCCGCCCTCGCCGTTGCTGTTTCTGCTGCAGCAATTGCGACACACGGTCTCTTGGGCATCGTCGCTTGCCCCTTCTGCGGTTGTGCAAATCTTACTCGCAAGCTCACTAAGAAAGAGCGTGCCCATTGGAAGCAACTCGATGATGCGGCTAGAAGTACGTTTGCACTGAAAAATGATCTTAGTACTATTGGTTGTCTTGTTACCCGTTTATATGATGATGTTGAAGGCGATAGGCATCTTATTCGACTTGGATTGGAGAGGGGGAAGAGACAGGTATA