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mature miRNA: ATGTGCCCATCTTCTCCACCG
species: Cynodon dactylon
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|209849471|gb|ES307243.1|ES307243 -56-I10 Bermudagrass Normalized cDNA Library Cynodon dactylon cDNA 5', mRNA sequence

ATGTGCCCATCTTCTCCACCG
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TACACGGGTAGAAGTGCTTGT

EST sequence (targeted fragment marked with yellow):
GGGGCAGAAGCAACCAACCAGAACCTTTTCGGAAGCAGCCGCAAGGTTCTATGTTGCCGAAGTTCTCTTAGCATTGGAGTATCTCCATATGTTGGGGGTCATATATCGTGATCTGAAGCCAGAGAATATACTTGTTCGTGAAGATGGGCACATCATGCTCTCTGACTTTGATCTGTCCCTGAGGTGTTCAGTGAGTCCAATGCTTGTGAGGACATCATCCGTAGGCAGAGATGAGCCCAGCAGGCCTTCTGGTCCCTGTGCACAAAGCTGCATTGATCCACTGTGCATCCAGCCATCTTGGAGCAACACTTCTTGCTTCACACCCCGGCTGGTTCCTTCGACAACATCAAGGCCCCGCAAGCCTAGAGCTGACCAGCAGAAACCATCACTTCCGCAGCTTGTTGTCGAGCCCACTGATGCGAGGTCCAATTCCTTTGTTGGGACCCATGAATACCTTGCCCCAGAGATCATTAGAGGAGATGGCCACGGCAGTTCAGTTGATTGGTGGACTCTTGGCATCTTCCTTTACGAATTACTGTATGGCAAGACACCATTCAGGGGACCTGGCAACGAGGAAACACTTTCAAATGTGATCTCGCAGGGCTTGAAGTTCCCTGACAGCCCAGCTGTCAGCTTCCATGCACGGGATTTGATCAGAGGGTTGCTTGTGAAGGAGCCAGAGTATCGGCTTGGCTCATCAAGAGGAGCCGCCGAGATCAAGCGGCATCCCTTCTTCGAAGGCCTGAACTG