mature miRNA: GTGCTCTCTATGCTTCTGTCA species: Helianthus annuus database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
Predicted miRNA targets | |||||||||
gi|22315196|gb|BQ916415.1|BQ916415 QHB17M21.yg.ab1 QH_ABCDI sunflower RHA801 Helianthus annuus cDNA clone QHB17M21, mRNA sequenc GTGCTCTCTATGCTTCTGTCA EST sequence (targeted fragment marked with yellow): GATGGAATTAGATATAACACCGGTGAGTTCGGTTGCCATAAACTTTTGTAAATCGATTTCTATCTTTTCAGCTTTGTCAATCAGTTCTACAGTTTTGAAATGTCGGTGGCGGCCATTAATTAAGAGGAAGAGATTATGATGGATGTTGACAGAAGATAGAGAGCACAGAGAAGCATGAATTGCACATAGATATTGCAATTCACTCCTTCGTGCTCTCTATGCTTCTGTCATTACCTATTATTTCCTTCTCCCTCTTACTCTAAGAGCTTCTGTTCTATATGTCCCAGTCTGCAACATAAAAGTTGCAAAGTTCATATACATACATAAGTTAGTGATCTATTTGTTTGATCCAATTTCTAAAAATATTCATCTTTATTTGGCTTTGGCATATCTTTATTTATAAAACAAAATTGTATTTGAAAAAACCTCTAGCAATAAATCTAGCAAGGAGAAATATGTTGCATTGTAGATAAACAAGGGGGTATTGTAACT | |||||||||
gi|211612881|gb|GE488587.1|GE488587 CCFS3675.g1_E08.ab1 CCF(STU) sunflower Helianthus annuus cDNA clone CCFS3675, mRNA sequence GTGCTCTCTATGCTTCTGTCA EST sequence (targeted fragment marked with yellow): GGTCACACATAACATCAAACTAAATACATAATACAACAGCCAATCAGTTACTGCTGAGCAATCATTGTAGATTGGATCATTACAGTTACATAACAATCAACAAACAGTTTATTTTATCATTACAGTTGCTTAACAATTCATCACTTTTAATGTGGTAGCCAAGTTTTGAGATGGTGATTAATCCCAAGAAAACGAGAGGACCCGTGCCGCTTCATTTTCTAACAATCCTTCAGGCCGGAAGTGAACCATCCCAACCGGGGGATTATTAACGTGACCACTAGGGGGGCCTGTTACATCTCGTGACAGAAGACGTGGACCTGAATGCTGACTCACTGAACCATTGAACTGTACCAGGTTGTTAGTTGGATCAGACACCGAAGAATTATGTATCGTGTGTTTCGAATTTGACAGAAGATAGAGAACACTCTTGGGCTCAACAAGAAGATGCCCCGATGATGGGCTTGTGTTAACAACTTGCTGGAAAGAGGATTCGGAAAACGACTGGTGGACTTTCTCAAAGTCAACGCCCAACAGAAACGGGAACCTTCGTTTTCTGACACTGCATAAACGA |