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mature miRNA: GTGCTCTCTATGCTTCTGTCA
species: Helianthus annuus
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|22315196|gb|BQ916415.1|BQ916415 QHB17M21.yg.ab1 QH_ABCDI sunflower RHA801 Helianthus annuus cDNA clone QHB17M21, mRNA sequenc

GTGCTCTCTATGCTTCTGTCA
||||||||||| |||||||||
CACGAGAGATA-GAAGACAGT

EST sequence (targeted fragment marked with yellow):
GATGGAATTAGATATAACACCGGTGAGTTCGGTTGCCATAAACTTTTGTAAATCGATTTCTATCTTTTCAGCTTTGTCAATCAGTTCTACAGTTTTGAAATGTCGGTGGCGGCCATTAATTAAGAGGAAGAGATTATGATGGATGTTGACAGAAGATAGAGAGCACAGAGAAGCATGAATTGCACATAGATATTGCAATTCACTCCTTCGTGCTCTCTATGCTTCTGTCATTACCTATTATTTCCTTCTCCCTCTTACTCTAAGAGCTTCTGTTCTATATGTCCCAGTCTGCAACATAAAAGTTGCAAAGTTCATATACATACATAAGTTAGTGATCTATTTGTTTGATCCAATTTCTAAAAATATTCATCTTTATTTGGCTTTGGCATATCTTTATTTATAAAACAAAATTGTATTTGAAAAAACCTCTAGCAATAAATCTAGCAAGGAGAAATATGTTGCATTGTAGATAAACAAGGGGGTATTGTAACT



gi|211612881|gb|GE488587.1|GE488587 CCFS3675.g1_E08.ab1 CCF(STU) sunflower Helianthus annuus cDNA clone CCFS3675, mRNA sequence

GTGCTCTCTATGCTTCTGTCA
||| ||||||| |||||||||
CACAAGAGATA-GAAGACAGT

EST sequence (targeted fragment marked with yellow):
GGTCACACATAACATCAAACTAAATACATAATACAACAGCCAATCAGTTACTGCTGAGCAATCATTGTAGATTGGATCATTACAGTTACATAACAATCAACAAACAGTTTATTTTATCATTACAGTTGCTTAACAATTCATCACTTTTAATGTGGTAGCCAAGTTTTGAGATGGTGATTAATCCCAAGAAAACGAGAGGACCCGTGCCGCTTCATTTTCTAACAATCCTTCAGGCCGGAAGTGAACCATCCCAACCGGGGGATTATTAACGTGACCACTAGGGGGGCCTGTTACATCTCGTGACAGAAGACGTGGACCTGAATGCTGACTCACTGAACCATTGAACTGTACCAGGTTGTTAGTTGGATCAGACACCGAAGAATTATGTATCGTGTGTTTCGAATTTGACAGAAGATAGAGAACACTCTTGGGCTCAACAAGAAGATGCCCCGATGATGGGCTTGTGTTAACAACTTGCTGGAAAGAGGATTCGGAAAACGACTGGTGGACTTTCTCAAAGTCAACGCCCAACAGAAACGGGAACCTTCGTTTTCTGACACTGCATAAACGA