miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse




mature miRNA: TGAGAATCTTGATGATGCATT
species: Helianthus annuus
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|90446511|gb|DY908394.1|DY908394 CHAX3277.b1_I04.ab1 CHA(XYZ) common wild sunflower Helianthus annuus cDNA clone CHAX3277, mRN

TGAGAATCTTGATGATGCATT
..||||||||||||| |||||
GTTCTTAGAACTACT-CGTAA

EST sequence (targeted fragment marked with yellow):
CAAGCTCCTTCGTGACCCAACCAACACTTGAAATAAATACTTCCTCTCCTAGGGTTTGAATCTCTCAACAGAATTACGAATTTCCAGGTTTAGGTGCTGTTGAAATATGGGGTTCAAATCAGTTTATAGGGCATTGCAAGATGTTTTTCCAGAGGTTGATTCTCGTGCTCTGAAAGCTGTGGCTATAGAACATTCTAAGGATGCCGATTTGGCTGTGGAGGTTGTTCTTGTTGAGGTTATCCCTAATCTTCCTAAAAAAACAATTACAGTTGGTTCTTCAAGTAGTAGCAAGAGCTCATCCAGTTTGCTTGAAGGTGGCGGTGAAACTAGTAAACCCGAGTCAACTATGGATCGTTTAGTTGTTAATTTAAATGATCATGAACAGTCAACTAAAGATTATGTTGTTTCGAGCATTGATGGAAGCTTACCTAGTGTAACAGAAGCCTTGGATGCTAGTGATACCGCTCAACTTAACAGTCACACAGTTATAGAGCCTGTAAATCCTGAATCACTTGCCACGTCATCTTATCACGATGCAAATGGTGAACCCGAAACTGAATGCTCATCAAGATTCTTGGAGACGTATGGAGACAACATTGCTATGGATCACGACAGTACTTCTTCTGACAGCCAAAATCAAGGATGCGTGAAAGCTGGATGCGAAACTGTTGATAATGAAACAATATGTGTTCCAGCAAGCAACCATTTAGTTGGAGTTTGTGAAACAAATGTAGTTGCGACTCAAGAATCGGGTCCCACTTCATCAAAATCTGTCTCGGAGAAAGAAGCTTCTGAAGTTGAGTTTGATGATTTAGATGGTGGGTCGGGTATGAGTTCTGTGCTGACT



gi|28370739|gb|AJ541264.1|AJ541264 AJ541264 HaDpsR1 Helianthus annuus cDNA clone HO0003G23, mRNA sequence

TGAGAATCTTGATGATGCATT
|| |||||||||| ||||||
ACACTTAGAACTAACACGTAA

EST sequence (targeted fragment marked with yellow):
GGGGGACGAGTGATGAATCAGAGGGAAAGCTTTCGGTTGTGGTTCTTCCAAACTCTGGGCATTGGGTTCACGTGGATAACCCGAAGGGACTCCTGGAGATTGTCACACCTAAAATGGTTTCCCTCAGGTAAACCCAAATGGGTTCTCTATTAATGCACAATCAAGATTCACATACTTGCTCATCATGACTCAGGTCCTCCTTTTAATAATGAGTAATTTAAATACTATTGGTTGTTACATTTTTTTTATTGTTTTGTTAGTTAATGATTTTTAGTTGGGTTTTATACTTTTATGTGTTTTATAACTCAACCAGTCTCTA



gi|211650634|gb|GE519910.1|GE519910 CCFU3675.b1_E08.ab1 CCF(STU) sunflower Helianthus annuus cDNA clone CCFU3675, mRNA sequence

TGAGAATCTTGATGATGCATT
||||||||||||. |||| ||
ACTCTTAGAACTG-TACGAAA

EST sequence (targeted fragment marked with yellow):
GATCGGCGACTATGATACAGAACTCTTAAATTTATCGACGGTGCTAGAAGAGAGTTGTTTGGAGCTCAAGATGGCAACAAATTCTGCTTCTAATCTCCTTCATGCTGGACGTTCACTACTGCGAGGCCTCAATGGTTCCTACTCAGGAATCCTAAGATCACCACAAGAGACCACTTGTAATAGTTTCTTGGCTCAGCAAATAAGGACCTTCATACAAATGAGAACTAATCTCAAAGTGGTGGACAACTCCGGGGCAAAACGAGTGATGTGCATACAAGCTTTGAAGGGAAAGAAAGGGGCCCGATTAGGGGACACGATAGTTGCATCGGTAAAAGAGGCACAACCTGGGGGAAAAGTAAAGAAAGGACAGGTGGTGTACGGGGTAGTGGTCCGTGCCGCCATGCAGAAGGGCCGGTCTGATGGGAGTGAAGTCAAATTTGATGATAATGCCGTTGTGCTGGCCAACAAGCAAGGCGAACCGATCGGAACTAGAGTCTTTGGCCCGGTCCCACATGAGCTGAGGAAGAAAAAGCATGTCAAGATTCTCAGTCTTGCACAACATATTGCATGAGATACAAGGGCTGGTCCTTTTGTGGGCTGATTTTTTTTTGGTACAAACAGGTGAGATGAAAATTAGATCATTTTGTTTATGTAATCATGATTTAATACGTTGATTAAAAGTTAATAAATTGGACAAAAAAACTGTTAGTGGGGCAAAAAAAA



gi|211624321|gb|GE500209.1|GE500209 CCFT2133.b1_I06.ab1 CCF(STU) sunflower Helianthus annuus cDNA clone CCFT2133, mRNA sequence

TGAGAATCTTGATGATGCATT
|||||||||||| |..|||.
ACTCTTAGAACTTATGTGTAG

EST sequence (targeted fragment marked with yellow):
GGGTTCCAACTTTGTCTATTTCATCCCGTACCGAACCCTATTACGAGGATGATGTGTATTCAAGATTCTCAAACGGTGATTTCGATGATTATATGACTGACCATAACGCCTCTCCGTTGACTGAGTCGAACTCCGAGAAAGAACCCGACCTTGTTGTTGAGAAAACCGGCCTTGAGCTGTTGATGGAAAACGGAACGTCTGAATTAGTGGATGGAGATACGATTTGCTTGAGTATCAATAAGGGCAATAACGACAATTCATCTGATAGTGTTGCTGAAACCGAAATATTGAACCCGTTTTCTGATCTCACGGGTGACTATGACGCACACATACGGAATCTGTTATACGGTCAAGGGTGTCACGGTTATGCAATGTCTACGACTGTGGTTCGGGCCAGCCCTAGTCCGCCTAGTTCACCGTACGGAAATAAGAACTCGTGGGACACGTTCCACACGTCTGCAGCTGCTCATTCATGGCCCGGTCCGTTCAAAAGGAATTTGGCTTCTCACGTGAATGCAAACGGTGTAGTAATGGGCCATCCGAAGCATATCAACGGGTCTAACCGCAACGCGTTGCGTGAGACCGGGCCGTACATTCCTACGGCGGTATGTTTTTATCAAATTCTAAAGATAACATGCCATTTTTGTCCCTGACGTTTGGCCAGTTTTGCGACTTCCGTTCAAGAGCTCCATACAACGAGGATGAGATAGACCACGACAGGGGTGAGGAAGGGGCGGGGACCACCGTCTCTACG



gi|32536131|gb|CD852315.1|CD852315 DH0ALL27ZA02ZZM1 HaDevR5 Helianthus annuus cDNA clone HaDevR527A02, mRNA sequence

TGAGAATCTTGATG-ATGCATT
|||.|||||||||. ||||||.
ACTTTTAGAACTATGTACGTAG

EST sequence (targeted fragment marked with yellow):
GGAGTTTGTCGACCAACAAGAAAAGAACAAGGGGAAACCCTTCTTGATCATGAATCAGCCCAATTGAAAGGAAATTGAAGATTTTTATGATGCATGTATCAAGATTTTCAATCTCCTAAGTGTTCTTCACACCAAGTGTAGCAAGGCTTGGAAGACAACACGGCAAACAAGTGGAAATGGTGACGAATTTCTTACGGGCAAAGGTAAGTGATTCCGAATCACTTCTTAGTATGTGTATATATATAATTTTGATATTTATGGATGTGGGGAAGTTATGTAAGGTTGTGTAATGAATGAGAGTATTAAGATAAGTATTAATTTTGTTAGACAAAGATAGTTATCTAAGACGAAGGTATAATGGTGGGATTAAACGGGTCGAATAAATATGCATAAGTAATGTAACGATAATGAAATTCGTAAAGATTAAGGACCCGGGGTAGTGATTTTAGTCAATTATGTAAGGATTTATTTTACGGACAATTAGGAACAAGTTCCAAGTGATACGGATACAAAGCGATCAAGTTATGAGAGTTTTGGTATTAAAATGGTGGGCTGAACTGGGCAACATCGTAGCTTACGGTACCCACCGTAGGCTACGGTAGGTGCTGAAAAACCTTCTTCCACCGTAAGGCAGTTTAAAGGAACCGTAAGCTTTTGGGTGCCACCGTAAACTACGGTAGTCACCGTAGCTTACGGTAGAGGCTGTCGCGCCCTGCGATAATAGGAGTAAAGTCTCTCGCGGCCCGCGAGAGACCACTGAACTGGCAAAAGTCCCTAATTTTGTTGTTTTTGGACATGGAACTTGTTTTAATTTGTTTTCAAAGCCTCAAAACTAGTTGTTAAGATCGCTCTTGATTATAAGTAAATGTTATGGGACCTTCGGTAGTATA



gi|211624915|gb|GE501635.1|GE501635 CCFT2887.b1_M02.ab1 CCF(STU) sunflower Helianthus annuus cDNA clone CCFT2887, mRNA sequence

TGAGAATCTTGATGATGCATT
||||||||||||| |..||.|
ACTCTTAGAACTAATGTGTGA

EST sequence (targeted fragment marked with yellow):
CAGATCGCCGATATCAGCCTCTACGATCCCATCAACGTTTCAACAATAGGCATGTCGAAATCTCGAGTCTACGCTGACGTCAACGTTGTTCGCTCCAAGGAGTATTGGGATTACGAAGCTCTAACTGTTCAGTGGGGTGATCACGATGACTATTAAGTTGTTCGAAAAGTTGGAAGGGGAAAATATAGTGAACTTTTTGAAGGGATAAATGTGAACAGCAATGAGAAGTGTGTAATCAAGATTCTCAAGCCTGTCAAGAAAAAGAAAATAAAGAGAGAGATAAAAATTCTTCAGAATCTTTGTGGAAGCCCAAATGTCATCAAACTATAGCATATTGTCAGAGACCAGCACTCATAAACTCCCAGCTAGATATTTGACTTCGTGAACACTACAGATATTAAGGTCTTGTATCCAACATTGACAGACTATGGTATACGTTATTACATATATCAGCTTCTCAAGGCTTTAGATTATTGTCACTCGCAAAGAATAATGCACACGGATGTTATTCCTCAAACGCGATG



gi|211647733|gb|GE514973.1|GE514973 CCFT9685.b1_I21.ab1 CCF(STU) sunflower Helianthus annuus cDNA clone CCFT9685, mRNA sequence

TGAGAATCTTGATGATGCATT
..||||||||||||| |||||
GTTCTTAGAACTACT-CGTAA

EST sequence (targeted fragment marked with yellow):
ACCCTCCAATTTCTTAGCAAAGGGGTTATCTCGTCCGATGAGTTCCAAGCTTCTTCGTGACCCAACCAACACTTGAAATAAATACTTCCTCTCCTAGGGTTTGAATCTCTCAACAGAATTACGAATTTCAAGGTTTAGGTACTGTTGGAATATGGGGTTCAAATCAGTTTATAGGGCATTGCAAGATGTTTTTCCAGAGGTTGATTCTCGTGCTCTGAAAGCTGTGGCTATAGAACATTCTAAGGATGCCGATTTGGCTGTGGAGGTTGTTCTTGTTGAGGTTATCCCTAATCTTCCTAAAAAAGCAATTACAGTTGGTTCTTCAAGTAGTAGTAAGAGCTCATCCAGTTTACTTGAAGGTGGCGGTGAAACTAGTAAACCCGAGTCAACTATGGATCGTTTAGCTGTTAATTTAAATGATCATGAACAGTCAACTAAAGATTATGTTGTTTCGAGCATTGATGGAAGCTTACCTGGTGTAACAGAAGCTTTGGATGCTAGTGATACCGCTCAACTTAACAGTCACACAGTTATAGAGCCTGTAAATCCCGAATCACTTGCCACATCATCTTATCACGATGCANATGGTGAACCCGAAACTGAATGCTCATCAAGATTCTTGGAGACGTTTGGAGACAACATTGCTATGAATCACGACAGCACTTCTTCTGACAGCCAAAATCAAGGATGCGTGAAAGCTGGATGCGAAATTGTTGANTATGAAACAATATTTGTTCCAGCGAGCAACCATTTAGTTGGAGTTTGTGAAACAATATAGTTGCGACTCAGGATCGGGTCCCACTTTATCAAATCTGCCCTCGAGAAAGAACGTCTGAAGTGATTTGATGA



gi|90447318|gb|DY909201.1|DY909201 CHAX4126.b1_K24.ab1 CHA(XYZ) common wild sunflower Helianthus annuus cDNA clone CHAX4126, mRN

TGAGAATCTTGATGATGCATT
.||||| ||||||| ..||||
GCTCTTCGAACTACGGTGTAA

EST sequence (targeted fragment marked with yellow):
ATCAGCTACACTTCACCTACCCACAATAAAATCTCCATATATAATTGAAACCCTACTTTCATCTATATACATCTTTAAAAAAGCGAAAAATCCTCATTCGATCGCCTAATTTCCGATCCTTCTTTTGCTTCAAATGTTCATGAGATCATTAGATATGTGAAGATAATGAACAACATGAGTCAAAAGAAGATCATAACAACATTAAAGTTATCATACAAGCTATGCAAGTGTGGAAGATGGAGGTGATACAAGAGATGATGGAAAGGCTAAGATCAATAGTAGGCCCAGAGAGTTGGGATTACTGTGTGTTTTGGAAACCGTGTAAAGATCAAAGGGTGATTGAATGGGTGGATTGCTGCTGTTCTGGGAGTAATGTAAGGCATATGAACGGAAATGGTGGAGAACATGATCAACAACTGTTGTTTCAATGCAAAGATGTGGCATTTCATCACCCAACCACTGATGCTTGTCGCCTTCTTTCTCTTTTACCACCTTCCATGCCTTTTGACTCTGGAATTTATGGACAAACCATGATATCTAACCAACCAAGATGGCTCAACTTTTCCAATAGCTCCGATTCAAATTTTTGTGAGGAAAATCTAGGAACGAAAGCTTTGATTCCTGTTTCAATTGGGCTTGTAGAACTCTTCGTATCGAAACAAATAGCTGAAGACCAAAGCATAGTCGATTTTGTGACCGATGTGTTTAGCAAGTCACTCGAACAACATTCTATGTTAAACACAAGCAACAATGTGGCATCAAGCTTCTCGGTAAACATGGATGGTTTAGAAGACGGTGAATCAAAGGATTACATAGCTCAAGTGTTGGATGATCACAAGGATCCATGTAACAATTTCCAG



gi|211619776|gb|GE497473.1|GE497473 CCFS7977.g1_B04.ab1 CCF(STU) sunflower Helianthus annuus cDNA clone CCFS7977, mRNA sequence

TGAGAATCTTGATGATGCATT
||||||| |||| |||||| .
ACTCTTATAACTTCTACGTTG

EST sequence (targeted fragment marked with yellow):
GCTTTCTAATCACACTAAACCTTACAAACATAATATGAAAAGGTATAACTAATACAGACGCATGTACACTACATACGTATTCTTAAATGACGGATTACGTTGTACACATATCTCCAATAGAAACAAAGCTTACAAGAAAACGCTAATGCAACGAAATCAAGTCAACAAGATCTTTGTACTCGTCCGCTACAAAAGATTCAACCTTAAAACCAGGTTTCCCGTTGCTGTTGCTGTCGGTAGGAGTGATATACTTCGCACCGATAACCGTTGGCAAACTGGTATGGACTCGTGCATACAAGGGCCTTTCGCCCCTCCAATATTCCAAGGGCTTAGTTTTAATTCTGTTACTTCTTCTTACGCCAGCTGTCCAAGCAGACCCGCCCCCTGCTAGGCTATGGCGCTTCTTTTTTGTATCAATCTTACTTGCTCTTGTCTTCTTTCTCTTATTCATTGATGTCTTCGGGGGTTCCTCGTTTTGTTGTTCGGGAACAATATCAGGATTTTGAACAGGTAGACTTGCATCGGGAACGTTGAAAGAGTATCATCCGTTTGAACTGAACGGAAACAATGGCTTTCTGATTCTTGTGCTGTAGTGATCTCAACATTTTCTTCTGGTGGACAGGTTGGCACCACCTTCTCTGTTGCATCTTCAATATTCTCATTTTCCCCTTAATCTTGTTCGCAGGGAAGATATCTGGAACATCTTCAACGTTTAGTTAATTTTTGA



gi|22310818|gb|BQ912039.1|BQ912039 QHA19O09.yg.ab1 QH_ABCDI sunflower RHA801 Helianthus annuus cDNA clone QHA19O09, mRNA sequenc

TGAGAATCTTGATGATGCATT
|.|.|||||||||.||. |.|
ATTTTTAGAACTATTATTTGA

EST sequence (targeted fragment marked with yellow):
TGCAAGTTATAATGCGCATGGTACAAATGGAAGAAAGTATCTCCTTCCTGCTTTATATGATCCGTCTACTTCAAAGTGCTCCACATTGGCTTAGAGTTGAACCGAAAGTTGTAGTATAGATAAGAGGAAAAAGAATTAAGATTTTGTAATAGCTGATTCATTTATTATATTTTTATATATATTCTTTTTGAAGTTTATTATCAAGATTTTTAAT



gi|211606813|gb|GE483738.1|GE483738 CCFS1176.g1_O05.ab1 CCF(STU) sunflower Helianthus annuus cDNA clone CCFS1176, mRNA sequence

TGAGAATCTTGATGATGCATT
|.|||||||||| ||||| ||
ATTCTTAGAACT-CTACGAAA

EST sequence (targeted fragment marked with yellow):
AGATCAAAGCATCTCAAGATTCTTAAAAAAAACCCAACATGCAACAGCTAGTGATGACTTCACACATCAGTTATCATAAACATGTAAAGATTTCACTCTGCTCTTCACAAACCGGGGATCGGAAACTGGGTTGTCAACGCCTCAACTCTTTTTCTCAGATCTGAAACTTTATCGCTGAAGCTGTTGAAGTCCGAAGACGCTACAAACTTCATGAAATCTTGGAGCTTTGACCCGGAGACGGCTTGTTTGACCTCACGCGTCAGCTGCACCCCTTCGTGAATAAACTCGGCAATATAAATGAACTCCTGTTCAGTGAACCCACGAGTTGTCATGGCCGGTGAGCCGATACGTATGCCACCTGGCACAAGTGCACTTTTGTCGCCTGGTACTGAATTTTTGTTTAACGTTATTGACGCCAGGTCAAGGATTTTCTCAACCCTAGCACCGTCAAGACCCAATGGCCTGAGATCCACAAGAACCAAGTGGTTATCACTCCCTCCCGAAACCAACGTGTATCCAAGCTCCAACAATCGTTTAGCAAGAGCTCGACAATTAGAAACAACCTGGTTCTGGTAAGCTTTGAATTCAGGAGACTGAGCATGCTTCAAGCAAACCGCAAGTCCTCCTATTGTATGGTTATGTGGACCACCCTGTAAACCTGGGAAAACCGCATTGTTGATGGCGGATTCTACTCGAGTCCAAAACAGGATCTTTTTTGAAGATTTCATTCCCCCTCTCGGTCCTCTGAA



gi|22387820|gb|BQ970299.1|BQ970299 QHB41K07.yg.ab1 QH_ABCDI sunflower RHA801 Helianthus annuus cDNA clone QHB41K07, mRNA sequenc

TGAGAATCTTGATGATGCATT
.|||||||.||||.|| |||
GCTCTTAGGACTATTAGGTAT

EST sequence (targeted fragment marked with yellow):
GTCAATAACATCCGCCCACCTCACATTTTTATTCATCTCATACGCCTGCTTCCCTCTCGCAGAGCTCAAAACATCCACCTGAACACCCGGATACCGGTCCTTAATCAACTGAATAGTGGGAAAAAACAGCAAGTTTTCATAGACCCCACCAGCAACCACAACACAACACCTCCTAACATCCCCTCTAATCTTCAACCCAAGTGAAGCAACTTCAGGCATAAACCCCATTGGAAACTTAAGAAACCCGTATGGATTATCAGGATTCTCGGGTGGCCTGGGGTCCTCCGACTGCTTCCCTTCAGAATACTGTGTCCCATACTCCATGTCCGGGTCCTCACCCGTGTCAAATGGGTCTAGCCACTCGTTTTTTCTCTTTGTGGCATTTGGTCGAACAGTTGGTGTGCATGCGGGAAAATGAGGCTGACGATCGTGTTGGCGGGCTCGGGTCGGGTACGTGGCGTGTGGCGAGCGACGTGGGGAGGGAAACGCTGAAATGGCGCTGGACTATGCGTGAGGGGAAAGGGGGGAAGATTGC



gi|211656584|gb|GE521681.1|GE521681 CCFU593.b7_A06.ab1 CCF(STU) sunflower Helianthus annuus cDNA clone CCFU593, mRNA sequence

TGAGAATCTTGATGATGCATT
.|||||||||||||| ||||
CTTCTTAGAACTACTA-GTAA

EST sequence (targeted fragment marked with yellow):
CGGGGCTCTGACGCCACCGGTTGCCGGAATCCGATTCGCCGGAGACACCTTCACCTTAGGTTTTCTAGCGAGACGGAGATACAACAATAATAATAACCAACGCCTCATATATCTTTCTAGATTCCAATAATATTAATGGCGAAAAAGAGGAAATCATTGGCAACGAGCCTCGACGAAGTGGATCGGACGATGTACTCTTCGTTCTGCAACGCCGCTAATTCTCTCTCGCAGCTTTATTCGCAGGCCATGAGTCATCAGAAGCTCTCATTTCTCTCCGGTGAACGCCATGGTTTGGAAAAGCTCTATCAATGGATTTCTAAGCAAGATGCTGAAGGTTTGAGAGTGACCTCTGAAGACATACTAGCCTATATCGAGGCTGAGCTAGACTTATCCGTGGAGGACCCACCAACGGCTCCAAGAACCGCACAGCAGAACCAGCAAGTCACCAACCCTTTTATAAGTTCTGCGTCATCTAGTGGGCCAAACAACGATCAACAATCCAAAAACTACATTTTCTCAAACGCTTTATCGAGCCCTGTTCGTCGAAGCCTTCAAAACTATCATATATCTCAAGAAGCGTATGGTGTCAAGAATAATGATCATCAAGATTCTTCAATGGACATGCATGCAGATAGCACAGGTCATGATTCTACTCAATAATATAGCCCTTTTAAAGATATTCTGTGTTTTTGAATGTCGAANAATGTCAAGAAATTGTTCTTTTAGAATTAAACTAGTGGTGAAGGTAGTATTGCATATGGTGAAAAAAAGCAGTGTTTTTGAGGATGGAAGCTGTGTGATCTTTCATGT



gi|28370245|gb|AJ539942.1|AJ539942 AJ539942 HaSemS3 Helianthus annuus cDNA clone HM0007, mRNA sequence

TGAGAATCTTGATGATGCATT
||||||||||||||| |.|
CGTCTTAGAACTACTACTTGA

EST sequence (targeted fragment marked with yellow):
ACAAGCCTCCAAACCAGGCTCACTACAACCAAGACAAAACGCCCGAGTTCATCATCAAGATTCTGCAATTCTTGGTTCCATTAGTGATCTTGGGTGCTGCGGTTGGGATCCGATTCTATACAAAAGCACAGTAAGATCATCATGATATAATGATCTGGGTACTTCAAATTTGTGGCTTTTAGTTGTGTTGTTTAAGAATCTGAGTTGTTCTTGTTTCTTAAATCTTGAAACTGTTTTTGAGTACATGATGAAATGATTGTTGATTATGGTGACTTTAAGTTGGTAATACAAGTACTTCTTACCAAAAAAAAAAAAAAAAAAAAAAAAGT



gi|90445098|gb|DY906981.1|DY906981 CHAX1681.b1_B13.ab1 CHA(XYZ) common wild sunflower Helianthus annuus cDNA clone CHAX1681, mRN

TGAGAATCTTGATGATGCATT
.| ||||||||||||| |||
GCCCTTAGAACTACTAGGTAC

EST sequence (targeted fragment marked with yellow):
GAGAATTCATTTGTTATTTCTTCAAATTGTTCCATTGACGGTGATTTCATTCATCGCAATGACTGTGTTCTTTCGAACGGAGATGGATCGACGTACTCAAGAAGATGGTGGGATCTACGTAGGTGCTCTTTTCTTTGGTGTTTGTATGATCATGTTTAACGGGATGTCTGAAATCTCAATGACGATTGCAAAGCTTCCCGTGTTTTACAAACAAAGGGATTTCTTGTTTTTCCCCTCGTGGGCATACGCCTTACCATCATGGATCATCAAGATTCCCGTTTCGTTTCTTGAAGCCGCTGTTTGGACTATTTTCACTTATTATGTTATAGGATTTGATCCTAATGTCACAAGATTCTTGAAGTACTATCTTCTGCTGCTTCTTGTTAACCAGATGGCATCTTCATTATTTCGGTTCATTGGAGCAATGGGTCGAAATATGATCGTTGCAAACACTTTTGGTTCTTTCGCACTTCTGTTAGTTTTTGCCTTGGGTGGTTTTATTCTTGTTCGAGATGATGTAAAGAAGTGGTGGTTATGGGGCTACTGGTCATCTCCGCTAATGTACGCCATGAATGGAATTACTGTGAATGAGTTTCTTGGTCACCAATGGAGAATGCCATTCAATAATACCAACGTCACACTCGGAAGAACAGTCATCACATCGGGAGGGTTCTATGCCGAAGCTTATTGGTATTGGATAGCAGTTGCAGCTTTGGTTGGATTCGTTTTTGTCTTTAACGCATGTTTTGCTTTGTCTCTCGCTTTGCTCAACCCTTACGGGAAATCACAGTCTAGTGCATCGACACAAGATGATAGTGATACA



gi|211648200|gb|GE519470.1|GE519470 CCFU3441.g1_B22.ab1 CCF(STU) sunflower Helianthus annuus cDNA clone CCFU3441, mRNA sequence

TGAGAATCTTGATGATGCATT
.|||||||||||| || |||
CTTCTTAGAACTACAACATAA

EST sequence (targeted fragment marked with yellow):
CGAACGAACACTTGAGCATGGTTGATAGTTATTTATAGTTTAATTTGAAACATATAAATTAGTACTTATAGACAGGTGGGTTTAAGTTTTGTCTAACTGGATCTAACTTCCTCCATGGCTGCAACCAAGTTATCAAACTTAGCCCCAGTAACTTCTTTTACAATTTTACCATGTTTAAGGATCTTGAAGGTAGGGACCACCTTTATGCCTAGCTCCTTTGCCAATGGCTTATTTTCTTGATTGCAGTCAAGCTTTAGAAATACAACATCAAGATTCTTCTCAGCCAATTCTTGGAACCTTGGCGCGATTATCTTGCAAGGACCGCACCACTGAGTGTACATATCGAGAACAACAGTCTTATCACCGGCAGCATTAACGATCGGCCAAAGCGTATCCTTATCGACCTCCGTAACCACACCGACAACCACCGCCGTACCAGAGGCTTCCAAACTCGATCTCACCGTCAAATTCCTCAATTTGTTGGCGGTTTTACTACTCGTCGTTTTCACTAGATTGAACGACCGGCGAACTTCTCCGACGATGTTCGATTGCTTAGTCGGCCATGACGACGGTGATAGCGAGGGCGGCGGTGACGGTGACGGCGGTGAAATAGGGCGGCAGACGTGATGAATTTGTAACGCCATTGTAATGGTGGTTGTGGTTGTGGT



gi|211651825|gb|GE518790.1|GE518790 CCFU3078.g1_K01.ab1 CCF(STU) sunflower Helianthus annuus cDNA clone CCFU3078, mRNA sequence

TGAGAATCTTGATGATGCATT
..||||||||| .||||||||
GTTCTTAGAACAGCTACGTAA

EST sequence (targeted fragment marked with yellow):
GGATCAAAACCAAAACTCTTTCCCAAAAAGAAGTAAATTGGAAGTAAATCCTACCATTATACCATCATAATCCCCTAAAATCTCCCCTAACAAAACCAAAAAAAAGGCTTCAAAATCCATTATTCTCAAACCCAAAACCCCCCAAAATTCAACAAAAAAAACATAAAATAAACCCTTTTTCATGGCTCATCTTCTTCCTTCTCAACCAATATCTTCTTGCATGCTTCATAACACATAAACGAAATCCCCGCAGCCGGCATAAGCTTCATACAACTCGGCCCCAAACCACGATACAACCCATTAACACCTTCCTTCTCAAGAATACTTAAAAGAGCATGCAACATGTTATCATAAACCCGACCATTAATCGCACCCGCCTGCATGTGTTTTCTCGCCACTTCAAGTGGGAAAGTTGCACTGCTTGAGATTGCACCGGCTGCTGGCCCGATTAACAAAGTTGCAATGTTACCGATTCCATCTTTTTTCAAGAGTTTCTTGTAGGTTTTGCGTAACGTGTCGTAAGCAAAGTAATTTGTGGCTGCGTATGGGACCACACCGATNAGACTCGGGGTTAGACCGCGGTAGAGTTCTGCGGGGCCCTCTTCTTTTATTATCTTGACAAATGCATCGACAAGATTCTTGTAAACTCCCTCTGAACGGTGAGACGGGTTTTAGTAATTCAAGCCGATACGTGCGTA



gi|211637492|gb|GE510444.1|GE510444 CCFT7526.g1_K10.ab1 CCF(STU) sunflower Helianthus annuus cDNA clone CCFT7526, mRNA sequence

TGAGAATCTTGATGATGCATT
|.|||||||||| ||||| ||
ATTCTTAGAACT-CTACGAAA

EST sequence (targeted fragment marked with yellow):
CAGGATCTCAAGATTATTTAAGTTACAAAATCGTTGATCAAAGCATCTCAAGATTCTTAAAAAAAACCCAACATGCAACAGCTAGTGATGACTTCACACATCAGTTATCATAAACATGTAAAGATTTCACTCTGCTCTTCACAAACCGGGGATCGGAAACTGGGTTGTCAACGCCTCAACTCTTTTTCTCAGATCTGAAACTTTATCGCTGAAGCTGTTGAAGTCCGAAGACGCTACAAACTTCATGAAATCTTGGAGCTTTGACCCAGAGACGGCTTGTTTGACCTCACGTGTCAGCTGCACCCCTTCGTGAATAAACTCGGCAATATAAATGAACTCCTGTTCAGTGAACCCACGAGTTGTCATGGCCGGTGAGCCGATACGTATGCCACCTGGCACAAGTGCACTTTTGTCGCCTGGTACTGAATTTTTGTTTAACGTTATTGACGCCAGGTCAAGGATTTTCTCAACCCTAGCACCGTCAAGACCCAATGGCCTGAGATCCACAAGAACCAAGTGGTTATCACTCCCTCCCGAAACCAACGTGTATCCAAGCTCCAACAATCGTTTAGCAGGAGCTCGACAATAAGAAACAACCTGGTTCTGGTAAGCTTTGAATTCAGGAGACTGAGCATGCTTCAAGCAAACCGCAAGTCCTCCTATTGTATGGTTATGTGGACCACCCTGTAAACCTGGGAAAACGCATTGTTGATGGCGGATTCT



gi|22309508|gb|BQ910729.1|BQ910729 QHA15A16.yg.ab1 QH_ABCDI sunflower RHA801 Helianthus annuus cDNA clone QHA15A16, mRNA sequenc

TGAGAATCTTGATGATGCATT
|.|.|||||||||.||. |.|
ATTTTTAGAACTATTATTTGA

EST sequence (targeted fragment marked with yellow):
GGAATTCGGCCATTATGGCCTCGCTTCGCGTGCAAGTTATAATGCGCATGGTACAAATGGAAGAAAGTATCTCCTTCCTGCTTTATATGATCCGTCTACTTCAAAGTGCTCCACATTGGTTTAGAGTTGAACCGAAAGTTGTAGTATAGATAAGAGGAAAAAGAATTAAGATTTTGTAATAGCTGATTCATTTATTATATTTTTATATATATTCTTTTTGAAGTTTATTATCAAGATTTTTAATAACACT



gi|211617194|gb|GE491301.1|GE491301 CCFS5059.b1_E17.ab1 CCF(STU) sunflower Helianthus annuus cDNA clone CCFS5059, mRNA sequence

TGAGAATCTTGATGATGCATT
||||||||||||| |..||.|
ACTCTTAGAACTAATGTGTGA

EST sequence (targeted fragment marked with yellow):
CGGGGCGGCGATCGCGGCGCGGCCGCTACGCCGCCGTCTTCTACCGCCCCTCTCCTCCCTTCTTCCCCAATCCAGCTGCCGCCTCCTCCTTCCAACAGATCGCCGATCTCGGCCTCTACGATTCCATCAACGTTTCAACAATAGACATGTCGAAATCTCGAGTCTACGCTGACGTCAACGTTGTTCGCCCCAGGGAGTATTGGGATTACGAAGCTCTTACTGTTCAGTGGGGTGATCAGGATGACTATGAAGTTGTTCGAAAAGTTGGAAGGGGAAAATATAGTGAAGTTTTTGAAGGGATAAATGTGAACAGCAATGAGAAGTGTGTAATCAAGATTCTCAAGCCTGTGAAGAAAAAGAAAATAAAAAGAGAGATAAAAATTCTTCAGAATCTTTGTGGAGGCCCAAATGTCATCAAACTATTGGATATTGTCAGAGACCAGCACTCAAAAACTCCTAGCTTGATATTTGAGTTCGTGAACAGTACAGATTTTAAGGTCTTGTATCCAACATTGACAGACTATGATATACGTTATTACATATATGAGCTTCTCAAGGCTTTGGATTATTGTCACTCGCAAGGAATAATGCACAGGGATGTTAAGCCTCATAACGTGATGATAGACCATGAGTTGAGAAAACTCAGACTCATAGATTGGGGCCTTGCTGAATTTTACCATCCTGGAAAAGAGTACAATGTTCGTGTAGCATCAAGATATTTCAAAGGGCCTGAGCTGCTAGTCGATCTGCAAGACTATGACTATTCCTTAGACATGTGGAGCCCTGGGTGTATGTTTGCTGGAATGATATTTCGTAGGAACCT



gi|22315341|gb|BQ916560.1|BQ916560 QHB18E13.yg.ab1 QH_ABCDI sunflower RHA801 Helianthus annuus cDNA clone QHB18E13, mRNA sequenc

TGAGAATCTTGATGATGCATT
|.|.|||||||||.||. |.|
ATTTTTAGAACTATTATTTGA

EST sequence (targeted fragment marked with yellow):
GAATTCGGCCTTATGGCCTCGCAACGGGTGCAAGTTATAATGCGCATGGTACAAATGGAAGAAAGTATCTCCTTCCTGCTTTATATGATCCGTCTACTTTAAAGTGCTCCACATTGGTTTAGAGTTGAACCGAAAGTTGTAGTATAGATAAGAGGAAAAAGAATTAAGATTTTGTAATAGCTGATTCATTTATTATATTTTTATATATATTCTTTTTGAAGTTTATTATCAAGATTTTTAATAACACTACATCTTTGTCTCATAG



gi|211616402|gb|GE493746.1|GE493746 CCFS6209.g1_A17.ab1 CCF(STU) sunflower Helianthus annuus cDNA clone CCFS6209, mRNA sequence

TGAGAATCTTGATGATGCATT
|.|||||||||| ||||| ||
ATTCTTAGAACT-CTACGAAA

EST sequence (targeted fragment marked with yellow):
CTTTTTAAGTTACAAAATCGTTGATCAAAGCATCTCAAGATTCTTAAAAAAAACCCAACATGCAACAGCTAGTGATGACTTCACACATCAGTTATCATAAACATGTAAAGATTTCACTCTGCTCTTCACAAACCGGGGATCGGAAACTGGGTTGTCAACGCCTCAACTCTTTTTCTCAGATCTGAAACTTTATCGCTGAAGCTGTTGAAGTCCGAAGACGCTACAAACTTCATGAAATCTCGGAGCTTTGACCCGGAGACGGCTGGGTTGACCTCACGTGTCAGCTGCACGCCTTCGTGAATAAACTCGGCAATATAAATGAACTCCTGTTCAGTGAACCCACGAGTTGTCATGGCCGGTGAGCCGATACGTATGCCACCTGGCACAAGTGCACTTTTGTCGCCTGGTACTGAATTTTTGTTTAACGCTATTGACGCCAGGTCAAGGATTTTCTCAACCCTAGCACCGTCAAGACCCAAGGGCCTGAGATCCACAAGAACCAAGTGGTTATCACTCCCTCCCGAAACCAACGTGTATCCAAGCTCCAACAATCGTTTAACACGACCTCGACAATTAAAACAACCTGGTTCTGGGAAGCTTTGAAT



gi|90442596|gb|DY904479.1|DY904479 CHAX10805.b1_I13.ab1 CHA(XYZ) common wild sunflower Helianthus annuus cDNA clone CHAX10805, m

TGAGAATCTTGATGATGCATT
||||||| |||||| .| |||
ACTCTTACAACTACAGCTTAA

EST sequence (targeted fragment marked with yellow):
GCAGATGTCTTTGGAGAGATGGCTGCTGGAGATTCATCAAAGGATTTGGAGAGAAGCTATTTCGATGTGTTGGGTTTATGTTGTTCATCTGAGGTGCAACTCATCGACAGGATTCTTAAACCTCTCGAAGGCGTTCATCATGTCTCCGTCATCGTTCCCACCAGAACTGTTATTGTTCTTCACGATGTCGCGCTCATTTCGCAGCTTCAAATCGTTAAGGCGCTAAACCGAGTACGGCTAGAAGCAAATGTGAGAATGAAAGGAGAGCAAAGCTACCAAAACAAGTGGCCAAGTCCTTTTGCAGTGGTGTGTGGTCTGTTACTTTTGTTGTCATTTTTCAAATATGTTTATTCACCATTTCAATGGTTGGCTCTCGGTGCTGTCGTTGTTGGCATCATACCGTTGGTTTTGAAAGCTATTGCATCACTAAGGAACCTTGAATTCGACATCAACATTCTCATGCTAATTGCAGCTGGAGGATCTGTTTTCCTAAAGGATTACTGGGAAGCCGGGACGATTGTGTTTTTGTTGAATATATCAGAATGGCTCGAGATAAGGGCCAGTCACAAGGCCGCTGCTGTGATGTCATCATTGTTGAGCATAGCTCCTCAAACGGCTGTATTAGCGGACACTGGTGAAGAAGTCAACACCAAGGAAGTGATGGTCAATACAAGACTTGCAGTTAAGGCTGGGACCATGATCCCCATTGACGGAGTAGTTATGGATGGGAACTGTGAAGTTGATGAGAAGGCTTTAACTGGTG



gi|211654716|gb|GE521845.1|GE521845 CCFU637.g1_I16.ab1 CCF(STU) sunflower Helianthus annuus cDNA clone CCFU637, mRNA sequence

TGAGAATCTTGATGATGCATT
|.|||||||||| ||||| ||
ATTCTTAGAACT-CTACGAAA

EST sequence (targeted fragment marked with yellow):
CTTAGATTAAAACTTCAGGATCTCAAGATTATTTAAGTTACAAAATCGTTGATCAAAGCATCTCAAGATTCTTAGAAAAAAACCCAACATGCAACAGCTAGTGATGACTTCACACATCAGTTATCATAAACATGTAAAGATTTCACTCTGCTCTTCACAAACCGGGGATCGGAAACTGGGTTGTCAACGCCTCAACTCTTTTTCTCAGATCTGAAACTTTATCGCTGAAGCTGTTGAAGTCCGAAGACGCTACAAACTTCATGAAATCTTGGAGCTTTGACCCGGAGACGGCTTGTTTGACCTCACGTGTCAGCTGCACCCCTTCGTGAATAAACTCGACAATATAAATGAACTCCTGTTCAGTGAACCCACGAGTTGTCATGGCCGGTGAGCCGATACGTATGCCACCTGGCACAAGTGCACTTTTGTCGCCTGGTACTGAATTTTTGTTTAACGTTATTGACGCCAGGTCAAGGATTTTCTCAACCCTAGCACCGTCAAGACCCAATGGCCTGAGATCCACAAGAACCAAGTGGTTATCACTCCCTCCCGAAACCAACGTGTATCCAAGCTCCAACAATCGTTTAGCAAGAGCTCGACAATTAGAAACAACCTGGTCCTGGTAAGCTTTGAATTCAGGAGACTGAGCATGCTTCAAGCAAACCGCAAGTCCTCCTATTGTATGGTTATGTGGACCACCCTGTAAACCTGGGAAAACCGCATTGTTGATGGCGGATTCTAACTCGAGTCCAAAAACAGGATCTTTTTTGAA



gi|22463707|gb|BU028187.1|BU028187 QHH10P20.yg.ab1 QH_EFGHJ sunflower RHA280 Helianthus annuus cDNA clone QHH10P20, mRNA sequenc

TGAGAATCTTGATGATGCATT
|.|.|||||||||.||. |.|
ATTTTTAGAACTATTATTTGA

EST sequence (targeted fragment marked with yellow):
TGCAAGTTATAATGCGCATGGTACAAATGGAAGAAAGTATCTCCTTCCTGCTTTATATGATCCGTCTACTTCAAAGTGCTCCACATTGGTTTAGAGTTGAACCGAAAGTTGTAGTATAGATAAGAGGAAAAAGAATTAAGATTTTGTAATAGCTGATTCATTTATTATATTTTTATATATATTCTTTTTGAAGTTTATTATCAAGATTTTTAATAACACTACATCTTTGTCACG