miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse




mature miRNA: TTTCAAAAAAAACCTTTTGGG
species: Helianthus annuus
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|211645410|gb|GE513251.1|GE513251 CCFT8870.b1_K09.ab1 CCF(STU) sunflower Helianthus annuus cDNA clone CCFT8870, mRNA sequence

TTTCAAAAAAAACCTTTTGGG
||||||| ||||||||||.
CAAGTTTTCTTTGGAAAACTA

EST sequence (targeted fragment marked with yellow):
GTTCGTTAACAATTTTAGGGTTTCACTTTACGTCCTCAATCCGTACTACTTCGCATACAATTTGAACTTCTAATCATCAGATTGTTGTTAACTTCTACAAGGTTTGATGGCTCGTGAATGGACTGGGATTCAGCAGTTTCCGCTTGCAACACAGACAAAGTTGCTGGAGTTACTGGGAACACTAAAGGAGAAGTCGAGGGACAGTTTGACGATTCTTGTAATGGGGAAGGGTGGTGTCGGGAAATCCTCCACTGTGAACTCCATTCTTGGGGAACGCGCAGTTGCAGTCAGTGCATTTCAGTCGGATGTACCACGGCCCGTAATGGTTTCCCGTGAGCGCTCAGGGTTCACATTGAACATCATTGACACACCTGGCATTGTTGAAGGAGGATACGTCAACGATCAGGCCCTGCAACTCATCAAAAGGTTTCTTTTGAACAAGACCATAGATGTTTTGTTATACGTTGACCGGTTGGATTCCTATAGAGTGGATAATCTGGACAGACAAATTGTAAAGGCAATAACCGAGAGTTTCGGCAAGGAAATATGGCGTANAGGAGTTGTAGTGTTAACGCATGCTCAACTTACGCCACCAGATTGTCTTAGTTACGATGACTTTNTTGTCAGAAGATCAGAAGCCGTTCTTAAGTTGTAGACTCTGGGGCCTGCTTCAGAAACATGAAATCAAGATCATGTGATTCCGTTGTCTTGTTGAGACAGTAC



gi|32532167|gb|CD848345.1|CD848345 DH0AC005ZB02FM1 HaDevR2 Helianthus annuus cDNA clone HaDevR2005B02, mRNA sequence

TTTCAAAAAAAACCTTTTGGG
|||| ||||||| ||| ||.|
AAAGGTTTTTTTAGAATACTC

EST sequence (targeted fragment marked with yellow):
TTTTTTTTTTTTGAGCAAAATAGATCAATACATTAGTACTTCAGAATCTGTCATGTCTTACTCATCCTTCCAATAGCAAATGATGACAACTGGTAAATTCAAACATTTCTCTTCCTCTCCTCTAATGATGAGCGCTTTAAACATATGTTTAAAATAACACAGAAACATCATATTTGAAGTGCATCTGCAATAGATCCTGCCAGACTTATGACTTCAAAAGGAGCTTTGTTTCCAATTTCTTTAACAGTAGCACAAGAATCTGTAATCCAAAAGTACTCAAACGCCTTCTTCGAGTTTTCACCATCTTTGTGAACAAATCTCTCATAAGATTTTTTTGGAAACACTGCATGAGTGACATAAGCACTGACTTTGTTTGCTCCATGAGCTGCTAAAACTTTCTGGCATTCAATCAAAGTGCCTCCAGATTGCACTAAATCATCAACAATTACTACATGGCGACCCGCAGGATCGCCCTCTTTCAGCCTTACGATCCGCTTATCACCTTCACGAACTTTTGCACAAACCACTGTGGGAAAAGTGATCCAACAACTTGTGGAATCGCTTCCAAGCTCCATCATCTGGGAAAGGCGATCACAACATTATCCGCATCTGGGAAGTTGGTGGAAGACCGTTGCTTTTAAGAGAGGCATTC



gi|90461426|gb|DY923305.1|DY923305 CHAY6492.b1_H16.ab1 CHA(XYZ) common wild sunflower Helianthus annuus cDNA clone CHAY6492, mRN

TTTCAAAAAAAACCTTTTGGG
||||||| ||||||||||.
CAAGTTTTCTTTGGAAAACTA

EST sequence (targeted fragment marked with yellow):
CAATACCAAAACAGTCGTGAATTGTGTTCGTTAAACAAAATTTAGGGTTTCACTTTACGTCCTCAATCCGTACTACTTCGCATACAATTTGAACTTCTAATCATCAGATTGTTGTTAACTACAAGGTTTGATGGCCCGTGAATGGACTGGGATTCAGCAGTTTCCGCTTGCAACACAGACAAAGTTGCTGGAGTTACTGGGAACACTAAAGGAGAAGTCGAGGGACAGTTTGACGATTCTTGTAATGGGGAAGGGTGGTGTCGGGAAATCTTCCACTGTGAACTCCATTCTTGGGGAACGCGCAGTTGCAGTCAGTGCATTTCAGTCGGATGTACCACGGCCCGTAATGGTTTCCCGTGAGCGCTCAGGGTTCACATTGAACATCATTGACACACCTGGCATTGTTGAAGGAGGATACGTCAACGATCAGGCCCTGCAACTCATCAAAAGGTTTCTTTTGAACAAAACCATAGATGTTTTGTTATACGTTGACCGGTTGGATTCCTATAGAGTGGATAATCTGGACAGACAAATTGTAAAGGCAATAACCGAGAGTTTCGGCAAGGAAATATGGCGTAAAGGAGTTGTAGTGTTGACGCATGCTCAACTTACGCCACCAGATTGTCTTAGTTACGATGACTTTTTTGCAAGAAGATCAGAAGCCGTTCTTAAAGTTGTAGACTCTGGGGCCCGCTTCAAGAAACATGAAATTCAGGATCATGCGATTCCGGTTGTCTTGGTTGAAAACAGCAGCAGGTGTAATAAAAACGACAATGGAGAAAAGATTCTCCCAAATGATACTGTTTGGATTCCCAGCATAGTTGAAACCATCACAAACGTTGCTACAAACGAAAGCAAAAGCATTTTTGTTGACCAAAAGCTGATTGAT



gi|211626088|gb|GE500405.1|GE500405 CCFT2236.g1_H08.ab1 CCF(STU) sunflower Helianthus annuus cDNA clone CCFT2236, mRNA sequence

TTTCAAAAAAAACCTTTTGGG
||| |||||||| |||.|||
AAATTTTTTTTTTTAAAGCCC

EST sequence (targeted fragment marked with yellow):
GCCCAAAAGGAAAACCCTTTGCCCCGGCTTATTAATTTTTGGGGTTTTTTTTAAAACTCCCGAAAGTTAAAACCCTTGGGGTTTTTTGTCCCAAGGAATATCCCAAATTGTCCGCCCCCCCCCAGGGGGCTTTAAACCCTACCTAAAAGGGGGTCCCCTCCCCACCTTTTGGTCTTTTCCCCCTAAAACTTCTGGGATACCCCCGAAATTTTTTTTTTTAAAAAAAGAAAAAAACCCCCCGACCTTTTTTAAATTTAAGGGGTGCCCCCCCTTTCCAAAGGCCCCCCCCTGCTTTAAAAATTTGGGTCTCTGACTCCCCTTCCAAAAGATGGCCCCCTTTAAACCCCATGTGGTTGCCTCCCCCCAAATGGGGGTCGGGGCCCCCCCCCCCC



gi|211613050|gb|GE490394.1|GE490394 CCFS4622.g1_K03.ab1 CCF(STU) sunflower Helianthus annuus cDNA clone CCFS4622, mRNA sequence

TTTCAAAAAAAACCTTTTGGG
||||||||||||| |||| |
AAAGTTTTTTTTGTAAAAGAC

EST sequence (targeted fragment marked with yellow):
GTTATCAAAAAAAAACAAAAGGCCCTGTTTAAAAAAAGAGCTCCAAAAAGGAATTCCCCCCCAAAGCCAAGGCTGTTAAACGAGAGTTTTTGTTAAAAACTCATTTTTCTTCCCAAAAAAAACCGGGAAACCGGGGCCCCAAGGCCTGAGGTTCTGGGTGTTTCAAAAAAACCCCTTTAGGGGATTTATCCTAAGACGGGGGGGGGGGTTTTTTCATTCTCGGGGGAGGGCGGTGGAAAAAAAAACCCCGGCAACGGGTTCACAGAAAATGTTTTTTTTGAAAGGAACCCGGCGGTTCCTTTTGTCCCCGGGATGGGGCCCTTTCTTCTCCTGGGGAAACCTTGCCCTTTTTTGGGGATTTCAATTATCCCGTTTGAAAGCTTCTGGGCTTTTTTCATGGGGCCGATTGGGATTTTGCCAAAAATTCAAAGAGGGGGTTTTCTGAAAGGGAAAAAAATTTTTCGGGGTTCCAAA



gi|22451378|gb|BU015858.1|BU015858 QHE11G21.yg.ab1 QH_EFGHJ sunflower RHA280 Helianthus annuus cDNA clone QHE11G21, mRNA sequenc

TTTCAAAAAAAACCTTTTGGG
|||||| ||||| |||||||
AAAGTTGTTTTTTGAAAACCA

EST sequence (targeted fragment marked with yellow):
ACCACTACGCACCACCGTTCCCCTCACCTTCGCCGCCGGTCTCCGACATCAGGTCAAGGATGAAGTAGTAGGTTACAAGTAGTATAAGCAAGGGTACAAGTTTGATTTTCGACCACCAAAAGTTTTTTGTTGAAAACAAACTCATGAAAATGCACCCAACAAAGCAACCGAGGAGTCAAACCCAAATCCGCAATTGTTATCTGATATTGTAATGGAGATTGGAGCCCCGCCCGTGGCAATGGCAGCAAACAAGGATGGAATTATGACAGAGGTGGATGCTGACGTCCACGATGTTATGGCAATGGACGTCGAAGAAATCGAGAAGCCATCAGAATCAAGTCCCATGACAACAGTTGTATTATGATCATGGCTCATGGTCTTTCTTCAGACACCATAAGGCTGGACTATGCCATAAAAATGAGCTACCACTGCAGTTACCTAAGCTCATGGTGTGCCACTGGAACCTGGTTTTCAAGAACAATAAAAAAGCGACGTGTGGTATTGAGTAGTTTATATCAGCAGGTATATAATATGGGTAATGTGTGGTTATACCTCAGACCTCAGTTGCAATATAAAATGGGTTTATCTCTCAGTTGTCAGGTTAGAAGTTTAACTGCTATTGATATTGGGTCAACTGTTATAATTGGAGATATGCTGATGTTGGTCAGAA



gi|32537792|gb|CD853976.1|CD853976 DH0AMM24ZD05ZZM1 HaDevR6 Helianthus annuus cDNA clone HaDevR624D05, mRNA sequence

TTTCAAAAAAAACCTTTTGGG
|| |||||||||| |||||..
AATGTTTTTTTTGCAAAACTT

EST sequence (targeted fragment marked with yellow):
GCAAGCAGTAGGGTTTGAATCGATCTGCTGCGCAGCCTTAAATCTCACCAGTTTTCTCTTCATTCACTCACCATCCAACAATGGCTGTCGGCAAGAACAAGAGGATTTCCAAAGGAAAGAAGGGTGGGAAGAAGAAAGCAGCTGATCCGTTTTCGAAGAAGGATTGGTATGATATCAAAGCTCCATCACTGTTTAGCACTAGAAATGTTGGCAAAACTCTTGTCACACGTACTCAGGGTACCAAGATTGCTTCAGAAGGTCTCAAACATCGTGTGTTTGAAGTATCCTTAGCTGACCTTCAAAACGACGAGGATCACGCCTACAGAAAAATCCGTTTGAGAGCGGAGGACGTTCAAGGAAAGAACGTCTTGACCAATTTCTGGGGCATGGACTTCACCACCGACAAATTGAGATCGCTCGTGAAGAAATGGCAGTCTTTGATCGAGGCCCATGTTGACGTGAAAACTACCGACAACTACACTTTGAGAATGTTCTGCATCGGCTTTACCAAGAAGCGTGCCAACCAAGTGAAAAGAACTTGCTATGCACAATCTAATCAGATTCGACAGATTCTTCGCAAGATGAGGGAGATAATGGTCACACAGGCCCATTCTTGCGACCTAAAAGAGCTGGCACAAAAGTTCATTTTCCGGTCCATTGGAAGAAAAATCAAGAAGGCATCTTTTAGCCATTACCCTTTTCAAAACGTTTTTTTTGTAAGGGTTAGGGCTTTGAAGGCCCCAAACTTCTACCAT



gi|211610742|gb|GE488697.1|GE488697 CCFS3733.b1_I22.ab1 CCF(STU) sunflower Helianthus annuus cDNA clone CCFS3733, mRNA sequence

TTTCAAAAAAAACCTTTTGGG
.||| ||||||||||.|||..
GAAGGTTTTTTTGGAGAACTT

EST sequence (targeted fragment marked with yellow):
TTGTTGTCTCAGTTTCTCTCAAGGCGATTTAGGGTTTAACGCAGAATCATTCTGATTCTAAGTTGTTGTGAGTCTATTGTTCGTTCAATTGCAAGATCATGGTGTTGATGATCTTTTGAGAGTTAGAGAGTTGGCATTTCTTTCGTGTTGATGTTGTAGTTTGTTCAGGTTGTACTTTTGTGTTAATAACATTTGGGTTCGGGTATAATCTGAGTTCTATATGGTTGATACCATTGTTTTCACATGGTATCAGAGCTTTGATAGCTCTTGGGGTGTTGTCGGCGATCTTAGGGTTTCCATTCACATTTCTCTCCGTTGTGTTCTTGTCCAAATCTTTTCGTGTTGGGGGTTTTCTTCTTGATTTTGGGGTGTCTATTTGTTGCCGATTCCAGATCTTGAAGATCTGGTTATCTTGGTATTTGTGTTGTTCGAGAAACTGAAACCGTAGATCTAGTGTTTGGCGTTTGATCTAAGTCATGGTGAACTTTCTATTTGCCGACTGTAGATTGGGTTGCTGTGGATATCTTCAAGAGGTTTTTTTGGAAGTTGTCGCTCCGGTTAGGATTCAATCTTTGAAGATTGTAAAACCCTATCTGGATTTGGAGAAACCCTGACTTGGGTTTGCTTACTTGGTGAGATCGTTCTTTGATTTACGTTTTTTACATTTCTTTGCATTTAGGCATTGTTGTTACCGGACTATTCGGGCCAGTGTTGATTGGGACACAGAGAGGGTTCACTCTGTTGCATTTTTCGTGATATCTGTGTTTTGATATTTTTCTGGTGTGAATACCTGGTTG



gi|90444045|gb|DY905928.1|DY905928 CHAX13031.b1_N18.ab1 CHA(XYZ) common wild sunflower Helianthus annuus cDNA clone CHAX13031, m

TTTCAAAAAAAACCTTTTGGG
||||||||||||| ||| . |
AAAGTTTTTTTTGAAAATTGC

EST sequence (targeted fragment marked with yellow):
GTTGAAACTAAATTCGATGTTAAATTTACCATGTTTTTGTCTCAATTTCTGGCGAGCACTTACTGGGGCTGTTTATGAACGACATTAAGTAGATCTTAACTGCATCAGGGAGCAAAAAATTCCAATTGCCTATGAAATTTGTTGAAAATTTTTTTCATAATACAAGTGAACATCAACTTTTGTTGGCAACTTGTTTTTTCTAAAGAACTCTAAGGAACTAAAGTTTTTTGAGTTTTCTACGTGTGTTTTTCCAAGTTTGTACTGGTTGTACGGCGTGTAGTCAGAAGTAACGGGTCTTGTCTTTAGTAGGGATCCTGTATGTCATATTGCACCCTGTTATCTGACCTTTGCCATGTAGGGCGCACTCTCATGGCAGGTCCCTCTTTCTACTAAAAAGTTCTTCTTTTGGTTGGGAGAGGTCGCACGGGGTGCCCGTGACCTCGCCTCTGGTTTCTGTGTTCTCTCTAGCAGTGTTCAAGTCATCCCAACAGTTTTTTTAGAGGCAATATCAACAGTATGCAACATAGCATCAAAATTAACAAACTTAAGATCGTCACCTGAAGGTACTTTTGTGCAGTTGAATGTCATGGTAGTATTATACATTTTATATCACAGTTGATGTCTATAACTGGTCAGTGAACGTTAAAAGTTTTTTTTGAAATTCCATAAACATTTAAAACTCCGATTGATGTCTACAACTGATCAATCGATTATTTTGCAAGTTTTTATTGAAAGACG



gi|211626168|gb|GE499718.1|GE499718 CCFT1874.b1_D14.ab1 CCF(STU) sunflower Helianthus annuus cDNA clone CCFT1874, mRNA sequence

TTTCAAAAAAAACCTTTTGGG
..|||||||||| ||.||||
GGAGTTTTTTTTANAAGACCC

EST sequence (targeted fragment marked with yellow):
GCTGGCGATTGGTGTTGACAGCCACTCCACTCCCAGGCCATATGAGTCCCATGCTCCACCTATCCACCTTCCTTCATTCCAAAGGCTTCTCCATAACCATTACTCACTTCGAGTTGAACCGCCCCGATCCTTCACACTATCATGCTTTCACCTTCATTCCTCTACCCGACATATTATCATCATCTAACACCCCTAGTTTCGCAAACGCTGTCCAGTTCATGCAAACTCTCAATGATAACTGCAGGCCCCACTTCCAGGAACTCCTTGTTCAGATACAAAAACAGAAGGAATCAATAGTTGTTATCCATGATAATCTCATGTACTTTGCTGGATCAGTCGCCACTCATCTGGGTCTACCCTCCATCATCTTGCGAACCAGCAGTGCATCTACCTTCCCTGTACTCAAGATCATCCCTCAGCTTCATCAACAAGGTCGACTTCCTGTACAAGGTAGCCAAATTTAATCTACAAACCAACCTCATTAAATTAATTAGTCAAGATCTGTGTGTACGATGTGGCGGACCCAGAANATTTTTTTTGAGGGTGCTGAANAAATTTAAAAATTTTAGGCCCTAGCTATATAAAAAAATTCGGTTTATAACGGGTCGGGTCGGGTCATGTAAAATAAGTAAACAAGAACAAAACAAAGCTTTACCGTTCGGATCAGATCGGGTCGGATCGGGTCATTTCATTTTTGAACAATCAAACCCTA



gi|90464771|gb|DY926650.1|DY926650 CHAZ1330.b1_D21.ab1 CHA(XYZ) common wild sunflower Helianthus annuus cDNA clone CHAZ1330, mRN

TTTCAAAAAAAACCTTTTGGG
|||||||||||| | |||||
AAAGTTTTTTTTTAACAACCC

EST sequence (targeted fragment marked with yellow):
AAAAAAAAAGAAAAAAAAAAAAAAAAAGGGTTGCCCCCCGGGGCCCAACAATTTTTTTTTGAAAGCTTTTAAAAGGGGGGGGAAAAATCCCCTTTTCCCTGACCCGGGATTTTTCTAGAAAACCCCTGGCAAACCCAAAAAGGGGGAACCCCCCCTCAGGGCCCCTTTTTTTTGGGGGGGGGCGGGGAAAAAAAAACCCCCCAAGTTTTGGGGTTTTTGGAATTCCAAGGGGAAAAGGGTGAGTTTTTTTTCCTTGGGGGTGGGGGAAAAAAA



gi|22394460|gb|BQ976937.1|BQ976937 QHI23F21.yg.ab1 QH_ABCDI sunflower RHA801 Helianthus annuus cDNA clone QHI23F21, mRNA sequenc

TTTCAAAAAAAACCTTTTGGG
| |||||||||||||.| |.|
ATAGTTTTTTTTGGAGACCTC

EST sequence (targeted fragment marked with yellow):
GCATTCTACTCTCCATAGATTAAATAACATATATAGCCACAAACCATAAAGAATTGCTATTGGCCATAGATAAAGAAGAATGTATGGAAAACTGAACTCTCCAGAGGTTTTTTTTGATAAAAATTATCTCAATACATATAAAAACTTCGCGTCCGCATCGACTAGGACGATTCTATACTCGAGCAAGCTTATACATGAAGCCACAATTCC



gi|22393865|gb|BQ976342.1|BQ976342 QHI21F21.yg.ab1 QH_ABCDI sunflower RHA801 Helianthus annuus cDNA clone QHI21F21, mRNA sequenc

TTTCAAAAAAAACCTTTTGGG
|||||||||||||||.| |.|
AAAGTTTTTTTTGGAGACCTC

EST sequence (targeted fragment marked with yellow):
TAATCTAATATGAATTAAATAAAAAATAAAAACACAAACCATAAAAAAATGCTATTGGCCAAAGATAAAGAAGAAGGCATGGAAAAAAAAACGCTCCAGAGGTTTTTTTTGAAAAAAAACACACCCC



gi|211611232|gb|GE487198.1|GE487198 CCFS2964.g1_G22.ab1 CCF(STU) sunflower Helianthus annuus cDNA clone CCFS2964, mRNA sequence

TTTCAAAAAAAACCTTTTGGG
||| ||||||||| |||| ||
AAACTTTTTTTTGAAAAAACC

EST sequence (targeted fragment marked with yellow):
CCCCCATCCAAACTTGAGGGGTTTTTTTGCATGAAAAAAGGAACAAGGGTGGGAACAACTTGAATCAGGAGGCTTTAAAAACAAAAGCTGACCCCCAAAGGCCCCCCAATACCCAAAAAAGTTTTTTTTCAAACAACAAAGCACCCTCCCCCAAATGTAATGTAAGGGAACGAAATCCAAAATGAAGGAAAAAATCTTCTGAAACTGCTGGGGGAAAAATGTCCAAACGGGTTCCCCCTAAGAACCCCTGCCCCCTTTTTGAGGCCTTTACCATCATCGTTGTCCCAAAGCTGCACACCTCCCCCCCCATTGCTTACAAAAAGAAATTCGGGAAATTCTTCCTCTACAAAAACCCCATTTCGAGGAGGGGGAGGGGCGGCTCTACCAAAACCTCTCGGGGAAATCTTATTTGAGGCCCCCTTTGAAGGGATGGCATTATTCCCTTTATTTCCCCCGGCCCGGGCCCCAAAAGGGTCCCAAGTTGAGGGCTTCAAGGATAAATCGGATCCTTGCAATGATCTCTTGCCCCCCTCTTAAAACACCTTGAGAAAACCCCCTGGAATCCCCTCTGGCTTGGGGCTTTTTCAAAGAAAACAAAAC



gi|211640005|gb|GE509437.1|GE509437 CCFT7051.b1_F11.ab1 CCF(STU) sunflower Helianthus annuus cDNA clone CCFT7051, mRNA sequence

TTTCAAAAAAAACCTTTTGGG
||||||| ||||||||||.
CAAGTTTTCTTTGGAAAACTA

EST sequence (targeted fragment marked with yellow):
TCTACACTGTCCGTTGAAGAAATTTAGGGGTTTTCTTTACAATTTGAAGCCCCAAATATCAAATTTTCGTAAAAGATAAGGTTCAATGGCCCGTGAATGGAGTGGGATTCAGCAGTTTCCTCTTGCCACACAGAGCAAGTTACTGGAATTACTTGGAACACTAAAGGAGAAGGAGAGGAACAGTTTGACAATTCTTGTAATGGGAAAAGGTGGTGTCGGGAAATCATTGACTGTGAACTCCATTTTAGGGGAACGAGCAGTTTCAGTCAGTGCATTTCAGTCAGATATTCCACGACCCGTGATGGTTTCCCGTGAGCGGTCAGGGTTCACATTGAACATCATTGACACACCCGGTATTGTTGAAGGTGGATATGTCAATGATCAGGCCCTGGACCTCATCAAAAGGTTTCTTTTGAACAAAACAATAGATGTTTTGTTATATGTTGACCGCCTGGATTCCTATAGAGTTGATAACTTGGACCGACAAATTGTCAAGGCAATAACAGAAAGTTTCGGTAAAGAAATATGGCGTANAGGAATTTTGGTGCTAACACATGCTCAGCTCACACCACCAGATTTTCTTAGTTATGATGACTTTNTCGCACGAAGGTCAGAGGCTCTCCTTNAAGTTGTAGAATCTGGAGCTCGGTTCAATAAACGTGAAA



gi|211640536|gb|GE507344.1|GE507344 CCFT569.b1_B23.ab1 CCF(STU) sunflower Helianthus annuus cDNA clone CCFT569, mRNA sequence

TTTCAAAAAAAACCTTTTGGG
|||| ||||||| ||| .|||
AAAGCTTTTTTTCGAATGCCC

EST sequence (targeted fragment marked with yellow):
GCGGGCTTACACTCTTAAAATGGATTCTCCAACTTGGGAAAATCGATAGCGGGTTGACTTTATTCAACAAAATGATTAGTAGTGATCGCTTACCGAATTCTTGGACGTATAATGTGCTGGTTCATGGCTTGTGTAAAGTCGATCGGATTCAAGAAGCTTCGGTTTTTATAGGAAAGATGATAAAGATAGGGTTCAAACCGGACATTACTACATACACGATTTATATCGAAGGGTTATTAAAAAGATTCGATTTTGTTGATGCCCGTAAGCTTTTTTTCGAAATCGTTTATTCTGGATTGAAACCCGATGTTTGTACATACACTTCGTTTATTCTTGCATACTGTAGTCAAGGGATGGTCAACGAGGCAGAATATATGATGAATAAAATGTTGGAAGAAGGAGTCGAACCAGATACCGCAACGTATACGATTTTCATCGATGCGTATTTTCGTGCGGGAAAGTTAGATTCCGCCTTTGATGTTTTAAAACGTATGATGGATGCTAAATGCGAACCGTCTCACCATACATACGCTATTATAGTGAAGCACCTTTTAGTTTTACAACAAAAGGAAACCGTAAAGATGGAAACTTTTGATCTCAATATTGATAACGTGTGGAAACTAATGGATATAGAGACCGCTATGGATCTGTTTTCGGAAATGGTTAAACGTGGTTGCGGACCAAATGTCAAAACGTTCGAGGCGTTAACCGTTGGGCTTTGTAAAGAAAACCGACTCGAAGAAGCGTGTAGATTGGTTAGTCATATGTTAACGATCGGGCTTTA