| mature miRNA: TTTGGATTGAAGGGAGCTCTA species: Helianthus tuberosus database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|125422116|gb|EL434088.1|EL434088 CHTL1137.b1_B22.ab1 CHT(LMS) Jerusalem artichoke Helianthus tuberosus cDNA clone CHTL1137, m TTTGGATTGAAGGGAGCTCTA EST sequence (targeted fragment marked with yellow): CAGTGTTTTGACACATAATTCGATTGTTTCGCCGACTAGTTCCTGTTCCAATTTGGCTAGTGTTCAAAAAGTTGCTAACTTTAGGCCTTCGATCCCTCCGCCACCGCCTTTGCCGCCTAATCACCATCCGTTGGTTGCGAAAACGGATGGTGGGAATGCTAGTTCTGCGTCTAAAGCGGCGAATTTGATCAGTGTTGGTGGTGGTGTTGGTAATTGGTCTAGGTTATGGAGTGATGGTGAGAAGCAGAGTCAAAGTTATGGGATGGACCACCCTAGATACGCTGCACCTGCACCGTTTTCAGGAAATCTTGGTGGTTTGCCTTACGAATCCAGCCCGCCGATTTGGCCTCCCACCCCTAATCTAATGCTGCAAAGATCACAGCACTTGCAGCAGTCATGTTCGTCATCGATGGTGAATGTTTCTGCAAACACTTCATTGTCGTCGTCTTCGTCGTCTGTAATGAATTTTCAGATTGAGCCCCCTTCAAACCAAAGCTATTGTGGCAACAACTACCAACAATTGTGGCCCGATGAAGAGAAGATGATTGGCATGAAAAGGCCATACCCCTTTTCATTAGAAGATATGCCAATTCCGTCTTTTCACTGCAAATTTCCGTCTGCATACGTGTCTCCCGTTTCAAGATCCGATGATTACGCTTCTTGTAGCAACGGTGGAGGCACTACTAGCATAGAACCCGCACATCCAGCTTCTTTCAGAGAAAATTGTTCAAGCTCGGGTGCCATATCGGATGTAGTAACGAAAAAGTTCATCGATGAAAACCAAATACTGACTCGAGATTTTCTCAAATTAGCCCCTCCTCAAACATCTCAATTGCGTTCAAGTTCGAAAGAGAATTTACGCCTTTCACCTTGTACAGGAGAACAGCCTCAGTTTGAGAGACTACCGCTTTCAAAGGACCAATCCAAGGATCCGAAACATATGTCTGG | |||||||||
gi|125425271|gb|EL437243.1|EL437243 CHTM12222.b1_L08.ab1 CHT(LMS) Jerusalem artichoke Helianthus tuberosus cDNA clone CHTM12222, TTTGGATTGAAGGGAGCTCTA EST sequence (targeted fragment marked with yellow): CGGAGGGGTTCAGGGTTCCGGCGGCGGTACCGGTGAGAGGTTCTTTTAACCGTAAACGTTCAGAGACCAACGACACCAGCCATGGATTTCTATGTCTGTTTCATTCAACCAAAAAGGTCTATGAGGAAAACAAGAACCAAGTAGACAATATAAAATAAGAACCATGTGAGAATGTGGATTCAGAAGAGTTGATGATTCTTGATGAAAAAATTAAGCCCCATGAAGCACTGAATGCTTCAGTTAAAGTTTTAACAGATGGGGCCCCCTTCAAACCAAAGCTATTATGTCAACAATTGCCATCCTTTGTGGCAAGAGGTAGAGAAGGTGATGCTGCTGTTTGCTGTAACTTTTTCCAACTATTTGTATATGTGATAATAATGATCTTGGTTAGAGTTGATGTACGCAAAAACTAATTTACATCAATTCATGATATATGACACATGGTTGGAGTGAATCGGCCATACCCCTTTTTGTTGGAAATCAGGCCGATGCCATCTTTTCACTACAAATTTCTTTCTACATGATCTTGGTTTTCATGTTAGATATATGCATTGGTTTGAAACAAATTCGGAGATTTTCTAAAATTATCTCCTCCTAAAGCACATCCCAATGAAATTCAAGTTCAAAAGGAAAATTGTATCTTTCACCTTATATGGGTGACCAGCCCCAGTTTGAGACTCTACCACCTCAAAATGTATAATTTTTAAACAAAGTTTTTATCATTATAAGTTTGTATATATATATTTCTATCCTTTGGGTTGGTTAGTTTTTCAATATTTTGTTTAGGGCCAACTACAAGATCCTAGCCATTTGT | |||||||||