miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse




mature miRNA: ATACTCCTTTCATCCCAAAAT
species: Hordeum vulgare
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|21800294|gb|BQ659161.1|BQ659161 HD01L15w HD Hordeum vulgare cDNA clone HD01L15 3-PRIME, mRNA sequence

ATACTCCTTTCATCCCAAAAT
||||||..||||| ||||||
GATGAGGGGAGTAGAGTTTTA

EST sequence (targeted fragment marked with yellow):
GAAAAGGGGGCAAATTTGTATCTAAGGTAAGTTTGATACTAGATTTATTAGTAAGAAAAGGAGAAACTATGTACTCCCTCCGTCCCAAAACAAATGACTCAATTTTATACTAGCTTTAATACAAAGTTAGTGCAAAGTTGAGTCGCTTATTTTGAGATGAGGGGAGTAGATATTCATCTAAGATAAGTTAGATACTACATATGGTGGCTTGTACAGACGAGAACTTGTAGCAAATATATATATTACAGACTGGGGCTCCCATATTCTACGCCCGAACAAAGGCTTGTTTGGATGAGGCGCTACTACACTGAATCCCTCAAACTGAACAAAATCCTTTGCAAATCTCTAGAAGTCTGATTCGATACATGCCCATCCAGGAAGTACCCAAGGGGATGCGGTCTCATTCTCATGCATGCGCAAGGACCTGAGCCTCATGACCAGTTCAATCCATCATCATAGGGAGAGATATAGCCAGGCAACCACATAATCCTGCATATCTCTTGAATCCCACCTCTGGTTTTCATCAGATTCACAAAATACACCAAGCCACGCCTTCCAT



gi|21165427|gb|BJ486994.1|BJ486994 BJ486994 K. Sato unpublished cDNA library, strain H602 adult, heading stage top three leaves

ATACTCCTTTCATCCCAAAAT
|||||||.||| ||| ||||
TATGAGGGAAGCAGGCTTTTT

EST sequence (targeted fragment marked with yellow):
CCGATTCGGTCGGCACAGTCAACCCCGAGGCCCTGGTTGGACAAATAGTGGGACACGCCGATCAGGAAGTGTTCAAGACAATAACAAGCAGTTACTACTTACTAGCGGGGAGTTCATGGAATCACTGCATTTGTAGAATCATTAGGAATGAATTTTCTTGCGAATTATGCTAAGGATCCATCAATGTGGAGAGAACTTTCATAAATATGTCATTAGAAATCAAGAAAAAAGTAACCAGGAACTTCTCACTTTTAGAGGCCCTTTTTCTTCCCAGTTTCTTTGAAGTGGCGGCGAGGAAGCAGCCCTCGATTGGGGCCATGGTGCTCTGTCGGCGGGCTAGGAACAGCGGCGACTAGGGACTAGCCAAACTCTAGCACCAGAATGGGCGGTGGCGGGGAAGGAGCAGTGGTTTCCGGGGTACTTGGGGGAAAGGAGGAAGAAGCAGAGGAGGATTGATTAGCAGGGGATTTTAAATCACAAGGTTGTTTTTGCAAAACAACAAATGAACTAAGTCTTGGATATTCTTTTTCGGACGAAGGGAGTATAAGTATTTGTTATGCCCTGTTGTGCCATGGGGTTTATGTATAACCAAAATTCGGAANAACTCAAAGTGGCATGTGCAAGTGCGTGCAA



gi|166069305|gb|FD519194.1|FD519194 RUS36H09w HB (Hordeum vulgare cv. Barke) Hordeum vulgare subsp. vulgare cDNA clone HB12E13,

ATACTCCTTTCATCCCAAAAT
|||||||.||| | || ||||
TATGAGGGAAGCAAGGATTTA

EST sequence (targeted fragment marked with yellow):
AAAAGATCTTATATTTAGGAACGAAGGGAGTATGTATGTAAGTACATGGTGCAGTTGCTACTCCTCAGTACGTATCCCAGGCCGTATAACTGAACTGCTTTTACAGATGTAGCCATTCAGTCTCGCTGAGAGAAGAAGAAAAACCAGAGAGAGACATAAGCTACGTACGAAAAGTTAACAAGGACGGTCGCTACTACTAGTACGATTCAGGACTTCAGGCGGTGGCGACGGCTCGGGAGGCCGGCGTCGGGGAGGGCGGCAGGCGCGAGCTGAAGTTTCTGTGCTGGAAGGCGGCGTCCTCCGCGTCGGCGTCGCCATCGTCGCTGCCGCCGTCGTCGAAGTTGAGCGCGTAGCTG



gi|21163291|gb|BJ484846.1|BJ484846 BJ484846 K. Sato unpublished cDNA library, strain H602 adult, heading stage top three leaves

ATACTCCTTTCATCCCAAAAT
||||||.||||| ||||| |
CATGAGGGAAGTAAGGTTTAA

EST sequence (targeted fragment marked with yellow):
ACAGTCAAGTTATGTGATTTTGGGCTCTCTCGGTTATTGTCGAATTCTGCAATGAGTGACAACTCATCTGCAGGCACTCCAGAGTGGATGGCTCCTGAGCTTATTCGTAACGAACCATTTACAGAAAAGTGTGATATCTTCAGCCTAGGAGTTATCATGTGGGAGCTTTGCACTCTGAGTAGGCCCTGGGCAGGAAAGCCGCCAGTTCAGGTTGTTTACTCTGTTGCGAACGAAGGGGCAAGATTGGAAATACCAGATGGACCTCTGGGTAGCTTGATAGCAGATTGCTGGACAGAACCGGANAAGCGCCCAAGCTGCCAGGAGATCCTCACTCGTTTGCTTGATTGCGAGTACACCTTATGTTGAGCTACCTAGCTCTAGTATGTATATCAGCTACAGGCAACACATTGGTTCGGTTTATATTCCCTCCGTCCCAAAATAAGTGCCGTTGCTTTAGTACTATATTTGTACTAACTTAGTTCTAAATTTGGGTCACTTAATTTGGAATGAAGGGAGTACATCATTTGCTTTCCCCCTTTTCACCATTTTGACATTTT



gi|57830485|gb|CX631698.1|CX631698 GAN003E08f GAN Hordeum vulgare cDNA clone GAN003E08 3-PRIME, mRNA sequence

ATACTCCTTTCATCCCAAAAT
||||||.||||| ||||| |
CATGAGGGAAGTAAGGTTTAA

EST sequence (targeted fragment marked with yellow):
AGGCTCTGGGCAGGAAAGCCGCCAGTTCAGGTTGTTTACTCTGTTGCGAACGAAGGGGCAAGATTGGAAATACCAGATGGACCTCTGGGTAGCTTGATAGCAGATTGCTGGACAGAACCGGAGAAGCGCCCAAGCTGCCAGGAGATCCTCACTCGTTTGCTTGATTGCGAGTACACCTTATGTTGAGCTACCTAGCTCTAGTATGTATATCAGCTACAGGCAACACATTGGTTCGGTTTATATTCCCTCCGTCCCAAAATAAGTGCCGTTGCTTTAGTACTATATTTGTACTAACTTAGTTCTAAATTTGGGTCACTTAATTTGGAATGAAGGGAGTACATC



gi|161446594|gb|EX572464.1|EX572464 HDP31P08T HDP Hordeum vulgare subsp. vulgare cDNA clone HDP31P08, mRNA sequence

ATACTCCTTTCATCCCAAAAT
|| ||||||||||||| |||
AATCAGGAAAGTAGGGTATTA

EST sequence (targeted fragment marked with yellow):
AAAAAAATACTCTTAAATTATGGGATGAAAGGACTAATGCACAAAGTATAGTGCATCTATCAAAACAAATACAATGTACTCCCTCCGTCCCATAATGTAGTAGTGTCAAAAACCGTACTACATTATGGAGGGAGTATGACTCTGTCTGTATACAGGGAAGCCAAAAGCAAAACAGGCACATTTTTATTCGGCACCCAGCGAAAGAAACTGGTCAGAAGAACAATTACAACAAAAAATGAAACAAACCAGAGTGCTTTGGTCGCTGTTTAAAACTCGACGCGACATTAGTTACAGAAAAGTTGAACCAAACCTATTAGTTATAATTAACTAGCCGTAGTATAGTACGTCGCTCATTCCTTCTACAATCAAGGGAGAGGGTACTGAGATGAAGAAGAAGAATATTTCGAAATGCAATTAACGAATTTGATGGAGAGACTGCTGATGGAGGCCTACGCGCGTCGCCGGTGCGGGGGACGGGACGACAGCTCGTAATTACGTACGTGGTGCAGTATACTGACGCGCTCACGCGCACTGCTTCTACTCGGGGTTGG



gi|57831313|gb|CX632526.1|CX632526 GBN002L13f GBN Hordeum vulgare cDNA clone GBN002L13 3-PRIME, mRNA sequence

ATACTCCTTTCATCCCAAAAT
|||||||.||| ||| ||||
TATGAGGGAAGCAGGCTTTTT

EST sequence (targeted fragment marked with yellow):
GCAGGTACTCCCTCTTCGGGAACATGAAGAAGTCGCCACCCAAGCCAGCAGCCACCACTCACAGGAGCAACTTGTGATAGGTGCCTCTGCCTGCTCCTAAGTACCAAGGAAATGTGTTCTGAACGGCCGCCTACTTCTCTCTTATCAGTTCCGCTTGTATATGTAACCTTGATTCAGAGGACGATGTACTATGTACTGTATGACGTAGTATTATGCAACTCAACTTTGGAGCGGCCGCTGCGGCGACTAGGGACTAGCCAAACTCTAGCACCAGAATGGGCGGTAGCGGGGAAGGAGCAGTGGTTTCCGGGGTACTTGGGGGAAAGGAGGAAGAAGCAGAGGAGGATTGATTAGCAGGGGATTTTAAATCACAAGGTTGTTTTTGCAAAACAACAAATGAACTAAGTCTTGGATATTCTTTTTCGGACGAAGGGAGTATGAGTATTTGTTATGCCCTGTTGTGCCATGGTGATTTATGTATAACCGAAATTCGGAATGAACTCAAAGTTGGCATGTGCAAGTGCGTGCAATATTCTCAGGAGCAATTTCTCAATGTTGAATG



gi|21159440|gb|BJ480972.1|BJ480972 BJ480972 K. Sato unpublished cDNA library, strain H602 adult, heading stage top three leaves

ATACTCCTTTCATCCCAAAAT
||||||.|||||||||||||
GATGAGGGAAGTAGGGTTTTA

EST sequence (targeted fragment marked with yellow):
GGTTCCTAACATCTGCATTCCACTACTACACGAGNAAAAGGCCGACTAGCAAATACTCCCTCCGTCCAAAAATAACTGTATCAAGCTTAAAACAATTTTATACTAAAGCTAGCACAAAGTTGACACACTTATTTTGGGATGAAGGGAGTAGTACTCTCTCGGTAAAGAAATATAAAAGCGCTACTAGCACATTTTTTTCAGGAGTACTCCGTAGTACTCTCTCGATTCAGTTGTTTGTTGAAATCTTGAAATCATCCAGCAAGTCAGCAATTGCTGCCGATGAGGATCCACCCATCTCCAGCGCATTGGCAGCAATCTCTTTCGCCATCGTCATCCTCTGCCTGATCTCCTTCCCTTGCTCAGACTCCATGACCAGTCTCACCTTCGCCTCTACCTCCTCCGCTTTCACCATCACCTCGTCGTAGCCGTTCATGGCCACCCCAAGCTTCATCTCCTCCACGACGAACACCTTGTTCATCCTCTGCTCCGCGTACATGGGCCAGCACACCATGGGCACCCCGG



gi|30053876|gb|CB859318.1|CB859318 HI10B14w HI Hordeum vulgare subsp. vulgare cDNA clone HI10B14 3-PRIME, mRNA sequence

ATACTCCTTTCATCCCAAAAT
|||||||.||| | || ||||
TATGAGGGAAGCAAGGATTTA

EST sequence (targeted fragment marked with yellow):
ACAATCTTTAAAAGATCTTATATTTAGGAACGAAGGGAGTATGTATGTAAGTACATGGTGCAGTTGCTACTCCTCAGTACGTATCCCAGGCCGTATAACTGAACTGCTTTTACAGATGTAGCCATTCAGTCTCGCTGAGAGAAGAAGAAAAACCAGAGAGAGACATAAGCTACGTACGAAAAGTTAACAAGGACGGTCGCTACTACTAGTACGATTCAGGACTTCAGGCGGTGGCGACGGCTCGGGAGGCCGGCGTCGGGGAGGGCGGCAGGCGCGAGCTGAAGTTTCTGTGCTGGAAGGCGGCGTCCTCCGCGTCGGCGTCGCCATCGTCGCTGCCGCCGTCGTCGAAGTTGAGCGCGTAGCTGAGCGGGTCGTACCTGAACTCCCCCGCGGCCGACCCGCGCCGCCTCCACCTGGTTCTGCCGCCGCCGGTGTGCGGCCTCTCGCCCCCGGGC



gi|30601761|gb|CD057695.1|CD057695 HO15O12S HO Hordeum vulgare cDNA clone HO15O12 5-PRIME, mRNA sequence

ATACTCCTTTCATCCCAAAAT
|||||||.||| | || ||||
TATGAGGGAAGCAAGGATTTA

EST sequence (targeted fragment marked with yellow):
CGGCACGAGGCTATAGTAGAATCTCTAAAAGGTTTTATATTTAGGAACGAAGGGAGTATACGATATATAGGAGAGAGTATAGACAATCTGCTGGAAAACTAGAAATTTTGAGAGGGAATCGTTTTGGACCATTGTCTATATATATATATATACACACACACACAAGCTGCTACAGATGCTCTTACCTCTTTCCTTGCTATAATAATTGAGTGCATAACAACTCTTACAGGTGACAACAGGGATGGCTACCGGTAGCGAAGCTGGAAAGTCCGCCGAGGCCGTGCTGGAATGGCCTAAGCAGGACAAAAAGAGGATGCTGCATGCTGTTTACCGTGTGGGAGATCTTGACAAAACCATTAAGTGTTACACAGAATGCTTTGGGATGAAGCTGCTGAGGAAAAGAGATGTCCCAGAAGAGAAGTACACCAATGCGTTTCTTGGGTTTGGACCTGAGGATACTAATTTTGCACTTGAGCTGACTTACAATTATGGTGTTGACAAGTACGACATTGGAGCGGGCTTTGGACATTTTGCCATCGCAAATGAGGATGTGTACAAGCTGTCTG



gi|21267752|gb|BQ459981.1|BQ459981 HA07I21r HA Hordeum vulgare subsp. vulgare cDNA clone HA07I21 5-PRIME, mRNA sequence

ATACTCCTTTCATCCCAAAAT
||||| |||||.| ||||||
AATGAGTAAAGTGGCGTTTTA

EST sequence (targeted fragment marked with yellow):
CGGCACGAGGGTGCTTCGTGCAGAAGAGAATCCCCTACAGGTGCCACCAAGGGAGATAGCTTTAAAGGGAGCTCAGGATGCCGTCCAATACATGGCTGAATATGCAGCCAAGAAAACTACAAAGCCACAGCCGGTGAAGGCGAAGAAGAATTGGGCTCAGTTCTGCTTTTTCTCCAGACCCAACAAAAGGAAGCATGACCGGATAGACACTGACATGACTGATTGAAGGATGCCAGATGGTGCGTGGCTTATCCACCTTGTGCCCGTGGCTCAGAGAATTTTGCGGTGAAATGAGTAAAGTCGACGATCAGGACATGGTGGTTTCTCTTCGTGTCGTTTGTAATTTATTTATTTTTTGGCGGGAACTTGTTTGTATCTGTCACTAGTTTTCTGCGTTTCTGAATGAATGGTCGTTCTTCCGACCAGGGTTGGATTGTGC



gi|94334862|gb|BY877823.1|BY877823 BY877823 Germination shoots Hordeum vulgare subsp. vulgare cDNA clone bastl56b02 3', mRNA seq

ATACTCCTTTCATCCCAAAAT
||||||.||| | |||||||
CATGAGGGAAGCAAGGTTTTA

EST sequence (targeted fragment marked with yellow):
CTCCGAGTACGACGCCGCCCCGCTGCTGCCGGCAGTGCGAGGGGGCAGCCGCCGGAAACGGCTCTCCGACGCCGCTGATGGCAAGGGTAGCTTCGACGACGTCGTCTTACGAAACGCCTAAGTGACCTCAGAATATAGTAGTACACGGTACATTAGTAGTATTCCGTCCAAAATAAATGTCACAGATTTTGTACGACTAAATTAGTACTCTCCCCGTCCTAAAATAACTGTCTAAAGCTTAATACAACTTTGTACTAGAGCTAGTACAAAGTTAAGACACTTATTTTGGAACGAAGGGAGTACAATTTGTATACTAGGTCAACGACATTTATTTTGAAATATAAGACAGTGCAGTTCCAT



gi|217052209|gb|GH219165.1|GH219165 HVSMEg0018E11f2 Hordeum vulgare pre-anthesis spike (white to yellow anther) cDNA library HVS

ATACTCCTTTCATCCCAAAAT
|||||||.||||. || |||.
TATGAGGGAAGTGAGGCTTTG

EST sequence (targeted fragment marked with yellow):
TTTGGTGGGAAACGCTTTATGAGGCCCTTCAAGACTATGTTTCCGCGCGTAGAAAACCATAGCTCCGCTGGACCTGGAAAGCTGGAAGAAAATACCCGTGGGCTGGCAGGTTCTGCAGTTGATTACATGGTCTGTCTCCTATCAGACATTTTTATGCCCACGTATGATGGCCCAAGCAACTTTGCAAACAACCTCATTGGTCACCGCCTATACTATGGTTTCCGTACCACCATCACGCCAAACAGGAAGGCCCTTGCTCCCATATTCATGGACAGGGAGGTAGGCTCAACAGCTGGTTTTGAGGAGCGAGTGAGGCATGTCATGATGAAGAGATATGGTGCCCCCCACAAGCGCATTCATCCTGAATCTTTCTATACAAACTCATGGCCAGAGTGCTTTTGCCAGGCAAACCCTAGGAATCGTGCAGACAAATGCCCACCAGACAATATACATGAGGTTCTGGAGAATCAGTTTCGGAGTGAAGGGAGTATAGAAGTGAAAGCCAC



gi|166070553|gb|FD521635.1|FD521635 RUS03F03w HA Hordeum vulgare subsp. vulgare cDNA clone HA03G11, mRNA sequence

ATACTCCTTTCATCCCAAAAT
|||||||.||||||| | ||
TATGAGGGAAGTAGGATATTT

EST sequence (targeted fragment marked with yellow):
AAAATAAATGTCTCAACTTTATATTAATTTTAATATAAAGTTGTACTAATCTTGAGACGCTTTATAGGATGAAGGGAGTATAACTTTGGGAAGAATACAAAATTCAAGTTCTTAGCAACCTTCCAGCTAGTAGGGTTTGATGCGCCGTTATGCAATGTAAACGTGCCCTTCTATCTTACATCTACGTGCATCAAGGGAACCTGCAGAACTTGCACATGCACGCGATTGGATAGCATTTGGCCACCTGGGAGCACCTCCCCTGACAAAGAGGTTCGTCCTTGTTCTCAATGCGGCATGAATCGTCACAGTTGGTGGAATTGCATGGATCATGTGTCCCAACATATCTTCCAAAACAAGATTCTCCGGGTCTAGCATCTGATGATGATGATAGCATGAGCAAGATTACAGTCATGCACATCAGGGCGGTCCTC



gi|161467322|gb|EX574995.1|EX574995 HDP18H17w HDP Hordeum vulgare subsp. vulgare cDNA clone HDP18H17, mRNA sequence

ATACTCCTTTCATCCCAAAAT
||||||.||| || ||||||
CATGAGGGAAGCAGAGTTTTA

EST sequence (targeted fragment marked with yellow):
GGGGATGACAGTGACATTGTTGAGCATATACCTGACATCCAGAGTTTTGACTCCTTCAATTCTGAAGCAGTTAAGAAGATGGTTCTTCTGCCACATCTTGCAAAGAAGTATGGCACAGGCTGGTGGGAGCTTTGTTAAGATATCTTGATACTCCTTTCATCCCAAAATAAGTGTCTTAACTTTGTACTAACTTTAGTGCAAAGTTGTACTAAGCTTGAGACACTTATTTTGAGACGAAGGGAGTACCTATGTTGGTTAGGGTTCTACCCACCCCTGACATGTAGATAAAATTGGAGTTCAATTTGTATGATATGATTGTAACAACCTTAACCGTGCAATGTAAGTACAAGTGGACACCTACGGTACGTAGATACGCTTCCCAACATTTTCATAAGCTCCGGGCAGGAGATATATAGTTCTTGTGCAGGGCAATCACTTGCCCCACTGCATGGAGAGGAGAAGCATGCATGTGTGCTGTAATTCAAGATTTCTCTTGCTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAGCATTCGTGAGCCAGAGGACGAGACAAGGGGGAGTTAACATTGCGCAGTGTGAAGGTGCAACATAAGGAGTCAGATAGAGTGCATACTGTTCTCCACATCCAGCACTCCACATGGCCTGACCATGGTGTGCCAAATG



gi|24228792|gb|BU977999.1|BU977999 HA12G11u HA Hordeum vulgare subsp. vulgare cDNA clone HA12G11 3-PRIME, mRNA sequence

ATACTCCTTTCATCCCAAAAT
|||||||.||||||| | ||
TATGAGGGAAGTAGGATATTT

EST sequence (targeted fragment marked with yellow):
AATTTCATATATTTTATTATTAAAATAAATGTCTCAACTTCATATTAATTTTAGTATAAAGTTGTACTAATCTTAAGACGTTTATAGGATGAAGGGAGTATAACTTTGGGAAGAATACAAAATTCAAGTTCTTAGCAACCTTCCAGCTAGTAGAGTTTGATGCGCCGTTATGCAATGTAAACGTGCCCTTCTATCTTACATCTACGTGCATCAAGCGAACCTGCAGAACTTGCACATGCACGCGATTGGATAGCATTTGGCCACCTGGGAGCACCTCCCCTGACAAAGAGGTTCGTCCTTGTTCTCAATGCGGCATGAATCGTCACAGTTGGTGGAATTGCATGGATCATGTGTCCCAACATATCTTCCAAAACAAGATTCTCCGGGTCTAGCATCTGATGATGATGATATCATGAGCAAGATTAGAGTCATGCACATCGAGGGCGGTCCTCATCTTGGCTAACGGCGGCGTTGATGATGGGAATTGAGCCTCGTGCCG



gi|161453573|gb|EX582863.1|EX582863 HDP13E15w HDP Hordeum vulgare subsp. vulgare cDNA clone HDP13E15, mRNA sequence

ATACTCCTTTCATCCCAAAAT
|||||||.||| | || ||||
TATGAGGGAAGCAAGGATTTA

EST sequence (targeted fragment marked with yellow):
GGGAGATTAACTACTTCCATGCACGTGGAGTCGCCGGCAATGGCGCATCCAGGGCTTCACCCACATTGCTAGCTCTTCCTTCCATGCATCCCCTCTCTCCGTATATATATCTAGCCACCTACGTACGCTGGCATGCACACCATTATCAAATTCAACTGCGAAAGCACGAGTAAATTAAATACCATGGTGCGTGCGATATTCTCCCTCCGTTCCTAAATATAAGACTTTTTTGAGATTTCATTAAAGGACTACATACAAAGCAAAATGAATGAATCTACACCCTAAAGTGTGTCTATATACATCCGTATGTACTTCATTAGTGAAACCTCTAAAAAGACTTACATTTAGGAACGAAGGGAGTATATAGTACAGTATGTGACTACCATGTAAGTACACATGAGGCACAGTATTATTTTTTTTCATAAGCCAATCTCATTGTAAGTACGTACAAGTTATTTCAAATATAC



gi|94334682|gb|BY868487.1|BY868487 BY868487 Seminal root Hordeum vulgare subsp. vulgare cDNA clone bart41f09 3', mRNA sequence

ATACTCCTTTCATCCCAAAAT
|||||||.||| |||||||||
TATGAGGGAAGCAGGGTTTTA

EST sequence (targeted fragment marked with yellow):
GTCGTCGCAATCGCTTTGGTCTGATGTGTGGGTGTTTACATTCTGTATGTTATTCAGTCAGTGTAGCTTGTACTGATTTCATGTGAGCAAGTCTTTATTTACTTTGAATCATTTGGTATTCAAAGGTGGAGTCGCCCACCTATGATTCTGTTGATTTTGTTTTGCCTTGTGCTTGGACGTCGAAACGAATTTGAGCATCTCATCCTATAAAAGCTAACAGGGTGCTCAACAATATCGCTACCTCCTTTCTGGTTATATAAGGCTTACACGTACAGTACATATTATTCCCTCTTATTTTGGGACGAAGGGAGTATAAGTTACATTACCTCTGTCCTAAAGAACTGTCTTAGATTTGTCTAGCTATGTATGTATCTAACGCTAAAATGTATTTGGATACATCTGTGATGTATTTAGACAAATGTATGACAGAGCTTTTTGGGATGGAGTGGAGTATGTTGT



gi|24287105|gb|CA009761.1|CA009761 HT12O21u HT Hordeum vulgare subsp. vulgare cDNA clone HT12O21 3-PRIME, mRNA sequence

ATACTCCTTTCATCCCAAAAT
|||||||.||| | | |||||
TATGAGGGAAGCAAGTTTTTA

EST sequence (targeted fragment marked with yellow):
ATTTTTGAACGAAGGGAGTATGTCTTTATTTATTCCTCTATGCCTCCACACAGACAAGGAAAACACTTCCATTTACAGCACAACACCACAACCTGGCCCGCACTTGCCGACGCAGCCTGCATTATTAGTGCGGACGCAGCCTGCATTATTGCCTTATTCGCTACTACGAGCAAACAACACAGGGTGCTGAAAGTTTAGGGGCGGGTGGTACCTTACACTACATCCTGATCACTATACAGGGATTCATCACCTCTACTCGCAATAACATACTCGACAAGCGGTGATTCACATACGGCACGCAGCCTATTACCACAACAACAGCAGGGCAGCGAGGCAGAAACATCACGTGAGAACACAGCACACCGTAGCTAAATCACTTGCTGCTAT



gi|91112283|gb|BY875493.1|BY875493 BY875493 Germination shoots Hordeum vulgare subsp. vulgare cDNA clone bastl19h12 3', mRNA seq

ATACTCCTTTCATCCCAAAAT
||||||.||||| || ||||
GATGAGGGAAGTAAGGATTTA

EST sequence (targeted fragment marked with yellow):
TTCTCTGGAGATTTCGCAGCAAATGCTTGAACCAAAGTAGATGGTAAATGCACAAAGGGAGTTTTGAAGCAATACATGCTAGGTTGAACCAAAGTACTCCCTCCGTTCTGAAATATAAGACCTTTTAGAGTTTTGACTATAGACTACATACGGAATAAAATGAGTGAATCTACACTCTAAAATATGACTACATACATCTGTATGTAGTATATAGTGTAATCTCTAAAAGGTTTTATATTTAGGAATGAAGGGAGTAGATGGTAGAATGCACAAAGGGAGGTTTGAAGCAATACATGCTAGGTTGAGCAAGCGGTTGTGGATTGGAGTGAACAACACAAGTCATTACGTAATAAGGAAATTTTAATCAAGTCAGTTGCCC



gi|51519178|gb|CV056039.1|CV056039 BNEL13C2 Barley EST endosperm library Hordeum vulgare subsp. vulgare cDNA clone BNEL13C2 5' s

ATACTCCTTTCATCCCAAAAT
|||||||.||||. || |||.
TATGAGGGAAGTGAGGCTTTG

EST sequence (targeted fragment marked with yellow):
GGAATCGTGCAGACAAATGCCCACCAGACAATATACATGAGGTTCTGGAGAATCAGTTTCGGAGTGAAGGGAGTATAGAAGTGAAAGCCACTAGTCAGATAGATTCAACCAGCGAAACCGAAGAGACTGTGATTTAATTGAGGAACCAAACTGTTATTGTCTCAGAGGACTGACACTGAATCATCTATCACGTAGCGGGTTATTGCATTTTCGAATGGGTTGACTATTGAGGGATGCACTCAGGCCTAATAAACTGGAATGGAGGTAGTATTTCATCATAGAAATTTACACATGCAGTGTACATCCATCCATATGAACATCTAGTTTTCTTTTTGGTTNAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATTCCT



gi|18242882|gb|AV947085.1|AV947085 AV947085 K. Sato unpublished cDNA library, strain H602 adult, heading stage top three leaves

ATACTCCTTTCATCCCAAAAT
||||||.||| | |||||||
CATGAGGGAAGCATGGTTTTA

EST sequence (targeted fragment marked with yellow):
GCCTACTACAACCATGGAGGCATCCTGCCCTATGTAATCCGCAACATGGCAGGAGCTCAGAAATAGGCGAACGCGGCCACATACCCTTTTNGACNTAGATGGCGGCATGGCAGTCTTGTTAGTGCCACCGTGGACATCAAGAGTTTGCTCATTATGTTGTGGCCTTATGAATAAACCGAAAATAAAGCTGGCATTTCCATGCCTGGCGTGGGCGCAGGTCGACTTGGGGGGAGTTTGGTTGTGGTTATGAAACATGTGTTCATTTTGAACAAATCTTCAGTTGTGGTGGATTAAATTGGTAGAGCCTGGTTTACATTGCTTTGTGCTAAAAACAAATTTGAACTGGTAGCAATCTTGAGTATTTTTTTTAATCTTTTGCTCGACCAATCGACTGCCTGGTTTTGCATACCTGTAGTAACCTTTATTTACTAAAGTAAGTTACAAAATCAGGGTTCTCTTTGTTCCTTTCTATAAAGTGTATTTGTTTTTTAATAAAATTTTACTTCCTCTGCTAGTTCTCCTTAATTATAATTATTTTGGTACGAAGGGAGTACAATGTAAGGTGTGTTTCTTGTAAATCCTTNAATTTTTTTATAAGCCCTAAAAAAG



gi|21145611|gb|BJ467105.1|BJ467105 BJ467105 K. Sato unpublished cDNA library, cv. Haruna Nijo germination shoots Hordeum vulgare

ATACTCCTTTCATCCCAAAAT
||||| |||||.| ||||||
AATGAGTAAAGTGGCGTTTTA

EST sequence (targeted fragment marked with yellow):
GCTTTTTCTCCAGACCCAACAAAAGGAAGCATGACCGNATAGACACTNACATGACTGATTGAAGNATGCCAGATGGTGCGTGGCTTATCCACCTTGTGCCCGTGGCTCAGAGAATTTTGCGGTGAAATGAGTAAAGTCGACGATCAGGACATGGTGGTTTCTACTTCGTGTCGTTTGTAATTTATTTATTTTTTGGCGGGAACTTGTTTGTATCTGTCACTAGTTTTCTGCGTTTACTGNACATGAATGNGTCGTT



gi|59943498|gb|DN157604.1|DN157604 GCN001N07u GCN Hordeum vulgare cDNA clone GCN001N07 3-PRIME, mRNA sequence

ATACTCCTTTCATCCCAAAAT
||||||| ||| |||||||||
TATGAGGTAAGCAGGGTTTTA

EST sequence (targeted fragment marked with yellow):
ACAACAACACTTATTTTGGGACGAATGGAGTATTTTACAAGCCAATTACATGCATTGTCTTATCAATGTCGAGTAAAGAAATTTGTTATGTCCATGTGACTTATTCCAGAAACTTTCTTGGACCCTGTGGTTTATATAGGGTCATTTGCACAATTTATAAAAAAGGGATCAAAAGATGTAGCCCGTGGGGTAGAACGGGCAATTTTGCTAGTTCCATAAAAAGGTGCATGCATCAGGGGCACAGGTGAGCATTTGCTTTCGTCTTCGTTTTTTAAGCACAAACCGTAGTTCTACCACAATTTTCATTAATCAGGCAAAAGCAGTTGGAATCTGTTGCCGCAGTTGGAATCTTTTTGTGGTGAAAAAGCAGTGGATGAGCTCTTAGGGCAAAAATGCTACATCTACGACCTTATTACAGAGATTTTACGGACCTTTCAACCAACTAAACTTACCTCCCCCCTGATTTTCGGAGGGTGGGACAGCGGCCGCTCTAGGAGACTGGAGTGGAATCTAAAGAAGATTGTTGGTGGTTCCGAGCATACCCTTCGTGCAAAGCTCACATTTTCTCAGGAGACACATGGAAACCTCACAAAGGAAGCCGGACCAGTAAACATGAACTTCACTACACCTATGTACAATGCTTCAAAGTTACAGGTCAGATATCTTCAGATAGCGAAGAAATCCCAAACAT



gi|18241623|gb|AV945826.1|AV945826 AV945826 K. Sato unpublished cDNA library, strain H602 adult, heading stage top three leaves

ATACTCCTTTCATCCCAAAAT
||||||.||| | |||||||
CATGAGGGAAGCATGGTTTTA

EST sequence (targeted fragment marked with yellow):
CCTACTACAACCATGGAGGCATCCTGCCCTATGTAATCCGCAACATGGCAGGAGCTCAGAAATAGGCGAACGCGGCCACATACCCTTTTCGACCTAGATGGCGGCATGGCAGTCTTGTTAGTGCCACCGTGGACATCAAGAGTTTGCTCATTATGTTGTGGCCTTATGAATAAACCGAAAATAAAGCTGGCATTTCCATGCCTGGCGTGGGCGCAGGTCGACTTGGGGGGAGTTTGGTTGTGGTTATGAAACATGTGTTCATTTTGAACAAATCTTCAGTTGTGGTGGATTAAATTGGTAGAGCCTGGTTTACATTGCTTTGTGCTAAAAACAAATTTGAACTGGTAGCAATCTTGAGTATTTTTTTTAATCTTTTGCTCGACCAATCGACTGCCTGGTTTTGCATACCTGTAGTAACCTTTATTTACTAAAGTAAGTTACAAAATCAGGGTTCTCTTTGTTCCTTTCTATAAAGTGTATTTGTTTTTTAATAAAATTTTACTTCCTCTGCTAGTTCTCCTTAATTATAATTATTTTGGTACGAAGGGAGTACAATGTAAGGTGTGTTTCTTGTAAATCCTTGTAATTTTTTTATTAGCCCTAAAAAAGAAAGTATC