| mature miRNA: ATGCGACAAGTAATTCCGAAT species: Hordeum vulgare database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|161478909|gb|EX594174.1|EX594174 HDP32M12T HDP Hordeum vulgare subsp. vulgare cDNA clone HDP32M12, mRNA sequence ATGCGACAAGTAATTCCGAAT EST sequence (targeted fragment marked with yellow): GTGTTACTGGCCAATCTCCATAGAGAGGCAAAAATAAAATCGCCTTTCGTCCATTATACTACATACTCCCTTCATCCGGAATTACTTGTCGCACAAATGTATAAAAATGAATGTATCTAGAACTAAAATACATCTAGATACATCCATTCCTATGACAAGTATTTTCGGACGGGGAGAGTACTCTCTTATCATGCAGGCACAAGGAGCCACCGTGGAAATGCAGTGAGGTTTATAGCCATCACTACGGCAAGGCAAAACCATCCTCCATGCACTCTGTTCTGGTCTCCTGCATCAGCTGCTGCAGGAGTGAAGGGTTGCTTGTCACAATTGCGTCAACCTGCTCATACAGCATCCTCTTCATGGAGTCGCTATCGTCAACGGTCCATGCATACACTTTTCTATCATTTCTGTGCATGACCTTCATGAGCTTCTCATTGATCAAAGGATGATATACACCAGCAACTTTAGCCCCTTCAATCCTTACTAACTCCATTCTTTTGCCAGTGGACCAATCCACCATAACAATATAGCCAACCATAACATCTTTAGACAACTTAATCACATCTCTTCCTATGCTGTCACTTTTTGCCC | |||||||||
gi|21804580|gb|BQ663447.1|BQ663447 HU02K24u HU Hordeum vulgare subsp. vulgare cDNA clone HU02K24 3-PRIME, mRNA sequence ATGCGACAAGTAATTCCGAAT EST sequence (targeted fragment marked with yellow): AAGACAAGTACACGTGTTAATGTCATATAAACCATAATCTGGATTTCCAGGTATTAGTAAATTATTACATCAACCCGACTTGCATAACCCTACTACACCTACAGAGAGATTCCAGTTACACATAAACAAAGCAAAAATATCCTTGTTAAATACACTGTTTCATACAAACGTCCCGAAATGCAGGTCGCGCTCCCCCTGTTCTAAATTACTTGTCGCATAAATGGATAAAAATGAATGTATCTAGAATTAAAATACGTCTAGATATGTCTAGACACTCATCGCAAAAAAAAGATATGTCTAGACACAAGTCATCAAGCATTGCGGTGCCCAAAGGCACAATGGCGCAGCTCCTTCATCATCCCTGTACTAAGAAAGATGGATATCCTTGCGCAGAAATAAACGGCTGGACATCCTCATTGGTTCTTCGGTCCAAGTACAACCTTGAGGACCGATCCAGAACCAATTCTCTATCATTCCAATCCATACCGACAGCAGCTTGTGTGGTACTTCAAGCTGTTGACGACAAGATTTACTCAAAGGTTGAGACACATGGATATGTTGTAAGCTTGTAAACCCAGCTGGATGG | |||||||||
gi|161456086|gb|EX597422.1|EX597422 HDP15D05w HDP Hordeum vulgare subsp. vulgare cDNA clone HDP15D05, mRNA sequence ATGCGACAAGTAATTCCGAAT EST sequence (targeted fragment marked with yellow): GGGGACACATCTTGGGATTGCGACCTCTGTCAGCAGTTTCTTTGGTGAGAGCAGTCTGCTTGGGAAGAAAGAGGGTGGAGAGCAGAATGACCCTGCTGCTACTTCTGTTCTTCCCCAGGTCGGCTTACAAACTCAGCAGGAGAACACAAGGTTTGGTCGCATAATGAGGGGTGGGTTTGGAGACATGTTACGAGGCAAAGCAAAGGGCAGTGATGAAACCAGCTGAAATTATCAACGTTATCATTAAATGCAATATTTTCAAGCTTGATTTTGCCTCCGTCCGGAATTACTTATCGCAAAAATGGATAGAAATGAATGTATTTAGAACTAAAATGCATCTAGATACATCCATTCTTTCGACAAGTATTTTCTGACGGAGGGAGTAGTTAATGTAGAACATAACTATGCTATAAGAGCAAGTCATGCATGTATGTCATAAATTACATTGTTTTTGTATTACTCTGTCAATGCAAGCACTACATCATCAATTCATGCATATT | |||||||||
gi|24287545|gb|CA010201.1|CA010201 HT11F05u HT Hordeum vulgare subsp. vulgare cDNA clone HT11F05 3-PRIME, mRNA sequence ATGCGACAAGTAATTCCGAAT EST sequence (targeted fragment marked with yellow): CAAAATATGCAGGGTTGTGAAAAACCATCAGCAGCAAATGTATTTGACCTCAATGAAATTTCAGTCCGCATCATGGTAGGATTGCATTTGGGCAACCCTCATCATCTGGTTCTGTGCATCATTCCCCCAACTAAACTATAAAAACTACTACCTCCGTCCGGAATTACTTGTCGCACAAATTAATAAAAAAAGATGTATCTGGAACTGAAATACATCTAATACATTAATTCCTATGACAAGTATTTACGGACAGAGGAAGTGCCATCTATGGTATGAAAAGCAAATAAAGAAAAAATACATGAGGTGGCTCAAATGTAAAATGGGTTGTAAGTTTGTTTATCAGCACAAAGAGATGATT | |||||||||
gi|166066883|gb|FD517994.1|FD517994 RUS49G05w HB (Hordeum vulgare cv. Barke) Hordeum vulgare subsp. vulgare cDNA clone HB26F24, ATGCGACAAGTAATTCCGAAT EST sequence (targeted fragment marked with yellow): ACAGTACAAAATCATTATGCATCCTTGTTTAACACAAACATTTTTGTGAAATTTGTTTAACACATACTCCCTCCGTCCGGAATTACTTGTCACATAAATGTATAAAAATGGATGTATCTAGAATTATAATACATCTAGATACATACATTCCTATGACAAGTATTTTCAGTTGGAGGGAGTACATGTTATACAATACTTATAACACGATATATGTGTTTTCCTTTTGATATATAAAATCAAAATGGATTAGGAAAGAAAAACAGGACTAGGCAGCTTGGGCACTATACATATACATAAGCCAAGCTTCTTATTCTTGGGTTTGTTCCTTCAGCAGTGTAATCAGGCAGGCAGCAGCGCCTCTCCTCTCTTATTCTTCATTTATTATTTACTTCAACACAAAAACAGAAAGATCTTCGGTTGCTTCGACAACTTGTAGAACAGATCCTCGTGTTGAAACCGAGGAGGCGTCAACACCGAGGTTCGACAAAGACTGACACGGTTCTTCCGGGCACGGTGAACCTGCCCGTCGCGGCCTCGTACGCCGATTTCCTC | |||||||||
gi|161438045|gb|EX580170.1|EX580170 HDP30A17w HDP Hordeum vulgare subsp. vulgare cDNA clone HDP30A17, mRNA sequence ATGCGACAAGTAATTCCGAAT EST sequence (targeted fragment marked with yellow): CGAACATGAGGACTAAAGATGGACAGAAGAAGATTTTTCTCAAAGGCTTCCCTTCCTTACAAGTGCAAGAACTTATCTGCGTTCATACACCTATACCCGTCCGCGCTCAACTGAACCGCAAACGCAAACGGAAGCAGTGACTGGCCAAGGACAGTCGGATTGATTTAGGATGTTTTTTGTTTTTCATTACATATTCATCATATAAATGAAAATTTTCATGTCTAGTACTCCCTCTGTTCAGAATTACTTATCGCATAAATGAATAAAAATAGATGTATCTAAAACTAAAATACATCTAGATACATTCGTTTCTATGACAAGTATTTTCGAACGGAGGGAGTACGTAGTAATTTATAGATAGTGTATGGTTGGTGCTTCCGCGAAGCATCCAATCCCACTGTTAACGACCCTCTCCTGTGATGATGCACTTGATCCTAGCCCTTGAAGGTACAGTATCATCTACGT | |||||||||
gi|16293626|gb|BI951021.1|BI951021 HVSMEl0024A19f Hordeum vulgare spike EST library HVcDNA0012 (Fusarium infected) Hordeum vulga ATGCGACAAGTAATTCCGAAT EST sequence (targeted fragment marked with yellow): GAACTCAAAATCAGATTTCTCTTGTTGCCCAATGACTCTCTAATCATTGGCAGATCTGTTGCCCGTGCCATGGCAACCCAGAAGGTTGCCGCAGCTGAGTTTGAGATTGTAACGAAGAAGCGTTATAGCCTCTGCTCTTCTGCTGACCTCCTCCAGTTTGGGAAGCAGTTCAATGATTTATTTGGTGCTTGTCCGCGTGCGTTTGCTGGCCTTACGAGCCTGTGGCTGCAAAATATGAGGTTTGGTGAACTGGACATTCCCAACATCCTCAGCACTTGCAAGCTCTTGGAGTATTTGCGTTTATCCCATTGCGACTCAGGGGTCCATGCTGTGCTGCAAGTAGAACACGATCAACTTGTTGAGCTCGAGGTCGACCAGGGGAAATTTGAGAGAGTTGAACTGATATGTCTACCAAAACTCCAACGGATGACCTATGATAATTGGTTCTCTTCTCAGGATCCATTGTATTTTGGTTTTGTACCACAGCTTTCAAAGCTGAGCCTTATCAAAACTCGCATCCGTTCGGACAAGACTCTCGAGTTAAGTCACCTCCTTGCTAATGTTCCTTCCATAGACTATCTTCGTCTGGATTTTCGAAATGAAAAGATTTGGATTCTGCCAGAATGCCCAAAACTGCTCAGGCCTGTGCTCAACATACTACAGCATGTGAATCTGGGACATTCTTCCTGAAGGATGTGATTTAGCTTGGACTATGTTTATTCTTGAAGCTGCCCCCTTCCTTGAAAACCTGTGCTTCACATTGGGGATCACTTGGCGCATTAGGAAACCAAACAACATTCGCGGAGTACATTTGTTTCTGCGGAAAGGCAGACGTTAAGTGGAAACACTCTTCCTCCATTCCACCCAAAACTCTGTT | |||||||||
gi|217047208|gb|GH214016.1|GH214016 HVSMEc0009M04r2 Hordeum vulgare seedling shoot (etiolated unstressed) cDNA library HVSMEc (H ATGCGACAAGTAATTCCGAAT EST sequence (targeted fragment marked with yellow): TTTTTTTTTTTTTTTTACACATAAACAAAGCAAAAATATCCTTGTTAATACACTGTTTCATACAAACGTTCCGAATGCAGGTCGCCTTTGGTAGCTTCGTACTCCCCCTGTTCTAAATTACTTGTCGCATAAATGGATAAAAATGAATGTATCTAGAATTAAAATACGTCTAGATATGTCTAGACATTCATCGCAAAAAAAAGATATGTCTAGACACAAGTCATCAAGCATTGCGGTGCCCAAAGGCACAATGGCGCAGCTCCTTCATCATCCCTGTACTAAGAAAGATGGATATCCTTGCGCAGAAATAAACGGCTGGACATCCTCATTGGTTCTTCGGTCCAAGTACAACCTTGAGGACCGATCCAGAACCAATTCTCTATCATTCCAATCCATACCGACAGCAGCTTGTGTGGTACTTCAAGCTGTTGACGACAAGATTTACTCAAAGGTTGAGACACATGGATATGTTGTAAGCTTGTAAACCCAGCTGGATGGAACCGGTATCACAACCATATGTGTTTGCATAACCTTAAGCACCGTATCTCTTCAAAACTTTGCTTAGTGCTGGCATAACATTATATGCTTGATAGGACCTTCTCAGTTCAATAATTGAGCCCACAATAATCAAGACTGATGTGAA | |||||||||
gi|161445355|gb|EX598507.1|EX598507 HDP07H09w HDP Hordeum vulgare subsp. vulgare cDNA clone HDP07H09, mRNA sequence ATGCGACAAGTAATTCCGAAT EST sequence (targeted fragment marked with yellow): CGGCGATGAACAAATACAGTTCAGTAATACAAGGATAGAAGGATCTTAGCGTGGAACTGAATCTACATACTATGATGCTTTGACTCAGTAAAACCATTTTGTTTGATCTGAAGCGGTGAAGCAGTGGGCAAAAGACTGACCCACAGCAGGGCAAAAACTATCTTACAGGTCACCATCATTCATTTCCTGGACTCATGATTCATTGTAGAGAAGAAAATATGTGTTTCTCCTGGTGGACAATGGGCTATTGTCTGAAGCTGCAAGCAGGAGAGGGTTACAATCTGGTAGCTACAAGCCTACAATAGCCTTGTTCGGCAGTTGGTTACTGCATTTTAATGGGTTTGCTGCAAGAAGACTCATATGTGCATAGCTGACCTTTCATGCTCCCATGATTCTCTTCTGTTCTCCGTGATATGGAGAATATAGGTGTTAAACCTGTGAAAGGACAACTGGCGCAGCTTGTGATTTCTTGTTTGTCGACTTGACTAGCAAAGAGATTATCTAGTCAAGAACGCTAGTTTTCTTTTCTTGTAATGTTGCGCGGGTGTCAACTGTCAAGGATGAAATTCGAATGATAATTTGACACCCTTCTTATAGACTCCCTTCGTCCGGAATTACTTGTCGC | |||||||||
gi|21936673|gb|BM369542.2|BM369542 EBem07_SQ003_O12_R embryo, 28 DPA, no treatment, cv Optic, EBem07 Hordeum vulgare subsp. vulg ATGCGACAAGTAATTCCGAAT EST sequence (targeted fragment marked with yellow): GCCGGCCTACGGAGCGCAGGGCCACCTCCCCCTTTCCGATATCCCCCACTGGCTCCGGCACCGACGCTCCCATCATCCCCAGGAACCGCTGCATCCCGACTCAGAACCTGAACCTGCACGGGCGCCATCAGCCGCATCAGGGCGCTGGCGTTCGCCGCACCGACGCCGACGAGGCTGCCACCGACGCCATCAACCGCCATGGCGTGCCGTAATTCAAGGCTAGGCTACTATAGTAATCTAGTCTAGCGCTCGAGCCTCGAGGTTATCCACCTACGTAGTGCACCACTAGTATCCAGTTTTCAGTGCGCGTGGGAAAAAATAAAATTTGTAATGTACTAAAATCGATGGCAGGCATCTCTAGCATAATGTAATACTCCCTTCTTCGGAATAACTTGTCGCATAAATATATAAAAATAAATATATCTAAAACTAAAAAAAAAAA | |||||||||
gi|94337412|gb|BY858979.1|BY858979 BY858979 Etiolated seedling shoot Hordeum vulgare subsp. vulgare cDNA clone baet112e10 3', mR ATGCGACAAGTAATTCCGAAT EST sequence (targeted fragment marked with yellow): CACCGGAGCCGCCCGGGAGCGCGCGGACTCCACCGACGAAGCTGTCGTCGCCGCCCGCGCTGCGCGGCAACGGCACCAACGGCACCACGGCGTCATTGCCGCCGGCATCGTCGTCTTGGGCAAAGGGAACATCAGTTGGGTGGAGGTGTATAGCATTCTTGTATCTACTACCAGTACTGCTGCCCCTGGTATGATGAGATCCGGTGGTGAGCTAGTCCATTGCCGTCTCTCCTTGCTGAGAGCTCAATTCTTTTTTTCTTTTTCTTTTTTGCTTGCTTTGGTTACTACTCCCTCCGTCCGGAATTACTTGTCCCAACGAGGGCTAGAGGTGGAGGGAGCACTATTGTTTCTTC | |||||||||
gi|21936776|gb|BM369655.2|BM369655 EBem07_SQ004_D21_R embryo, 28 DPA, no treatment, cv Optic, EBem07 Hordeum vulgare subsp. vulg ATGCGACAAGTAATTCCGAAT EST sequence (targeted fragment marked with yellow): CACTCGTCTATCATCAGATTGAGCATCCAGTCCAGAAAAACCAGAGCAATCCGCAGGTGAGCATAATGGAGGCGACGAAGGAGAGGCGGGAGCAGAAGGCCGGCGACTCGGTGCAGCTGCCGACGGAGACGAGCCCGTACGTGCAGTACAACAAGGACGACGGCCTGGAGGACTACAAGATGCGGGCCTACGGCGCGCAGGGCCACCTCCCCGTCTCCGACGTCCCCCACGGCTCCGGCACCGACGCGCCCACCATCCCCGGCACCGCGCTCCCGACTCAGCACCTGAACCTGCACGGGCGCCAGCAGCCGCAGCGGGGCGCTGGCGTTCGCCGCACCGACGCCGACGAGGCTGCCACCGACGCCATCAACCGCCATGGCGTGCCGTAATTCAAGGCTAGGCTACTATAGTAATCTAGTCTAGCGCTCGAGCCTCGAGGTTATCCACCTACGTAGTGCACCACTAGTATCCAGTTTTCAGTGCGCGTGGGAAAAAATAAAATTTGTAATGTACTAAAATCGATGGCAGGCATCTCTAGCATAATGTAATACTCCCTTCTTCGGAATAACTTGTCGCATAAATATATAAAAATAAATATATCT | |||||||||
gi|161477231|gb|EX595506.1|EX595506 HDP24I23w HDP Hordeum vulgare subsp. vulgare cDNA clone HDP24I23, mRNA sequence ATGCGACAAGTAATTCCGAAT EST sequence (targeted fragment marked with yellow): AGCGGACGCCTCCGACGCAACTGTTCCCCTCTACACCAATACTGCGGTCGTCGGCTGGTCGTTCATCGACTGGGCGTGAGGTGGTGGAAGGGGCCTTGAGATTTCCACGTTGGATTGTTGGGGAAGAAGAGGTCATTTGCTGCAGGCAAGGGAGAGGCACCAGATTCCAGATTACCAACCATCGGTGGCTTATTTTGAAGAGGATTACAGAATCTTCATATTGAAGATGGCCACTTACAGTTTCATCTAAACAACGGGGTTTCCAACTTTTGGAGGGCCTAGATTTGTGAATGTTGGAGTGTATAGACATTCCCATGCCATCATATTGGGGGTCTGCAGTCCAGTCTTATCTTTCTTACCCTGAGTATTATTAACTATCTAACATGTTCACTGAAATTGTACCATCTTATTTGTTGGCTGATTTTTGTTTGTTTGTTATAATACACGGAGAGCTACACAAGTACTCCCTCCGTCAGGAATTACTTGTCGCACAAATGTATAAAAATGGATGTATCTAAAACTAAAATACATCTAGATACATTCATTCCT | |||||||||
gi|60275524|gb|DN180267.1|DN180267 HO27L15S HO Hordeum vulgare cDNA clone HO27L15 5-PRIME, mRNA sequence ATGCGACAAGTAATTCCGAAT EST sequence (targeted fragment marked with yellow): GCACGAGGAACAAATGAGTGTTTGGAGAACCATGGAGGTTGCTGGGTCGACAAGGCTAATAACGTCACCGCATGCAAGGATACCTTCCGTGGGCGTGTTTGTGAGTGCCCTATTGTCAAAGGTGTAAAATTTGTGGGGGATGGATATACCAACTGTGAAGCTTCCGGTGTTGGTAGGTGTGAGATCAACAATGGAGGATGCTGGAAAGAAACTAAGAATGGGAAGACAATATCTGCCTGCTCGCATGAAGAATCTGAAGGCTGCAAATGTCCACAAGGTTTCAAGGGCGATGGTGTAAAAAGCTGTGAAGATATTGATGAATGCAAAACGAAATCTGCCTGTCAGTGCAATGGCTGCAGTTGCGAAAATACATGGGGAAGCTACGAATGCAGCTGTGGTAGCAGCAACATGTTATACATGAGAGAGCAAGACACGTGCATCAGTGAGTAGCCTAACCTGAGATTTCTCCATACCTATCTTGTTATTTGTCTTGCAAGAACCAGTATACTATTCCCTCCGTCCGGAATTACTTGTCACAAAAATGGATGTATCTAGAACTAAAATACATCTTGATACATCCATTTTTGCGACAAGTAATTGCGGATGGAGGGAGTATATTAT | |||||||||