mature miRNA: CTGCGACAAGTAATTCCGGAC species: Hordeum vulgare database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
Predicted miRNA targets | |||||||||
gi|24229685|gb|BU978892.1|BU978892 HA14J03r HA Hordeum vulgare subsp. vulgare cDNA clone HA14J03 5-PRIME, mRNA sequence CTGCGACAAGTAATTCCGGAC EST sequence (targeted fragment marked with yellow): CGGCACGAGGCTACAAATTAACCTACCCAAGCGGAACTGCAACCGCCGTGCTTATAAATGGATTTCATGCGCCTAAGGGAGATGATGTGGCAAAGTATGCAGTTCTCTCACATAACCAATGGCCTTCATAACCAAATATTATGATTCCCTCATTTTCAGCAAGATTTGATGTTTTTCTTGCTAACGTCAGGATGCAAGTGAATGGATTCACAAAATACTTTGCAATTAGCTTCGTCTGGAGCTTCTTCCAGTGGTTTTATTCGGGTGGAGATCATTGTGGCTTTTCGCAGTTCCCCACTCTTGGATTAAGAGCTTGGAAACAAACGTAACACCCATCATGTTATTCATTATTACTCCCTACCTCCGGAAATACTTGTCGGAGGAATGGATGTATCTAGACGTACTGTAGTTTTAGATACATCCATTTTTACTACAAGTAATTTCGGACGGAGGGAGTATATTATATTCTTGACTGGTAACAATTTCACCTAATTTGGATTTTGTGATGGGGTGTCAGGTTCTTCTTTGACTTCAATCTCACATATGT | |||||||||
gi|166066883|gb|FD517994.1|FD517994 RUS49G05w HB (Hordeum vulgare cv. Barke) Hordeum vulgare subsp. vulgare cDNA clone HB26F24, CTGCGACAAGTAATTCCGGAC EST sequence (targeted fragment marked with yellow): ACAGTACAAAATCATTATGCATCCTTGTTTAACACAAACATTTTTGTGAAATTTGTTTAACACATACTCCCTCCGTCCGGAATTACTTGTCACATAAATGTATAAAAATGGATGTATCTAGAATTATAATACATCTAGATACATACATTCCTATGACAAGTATTTTCAGTTGGAGGGAGTACATGTTATACAATACTTATAACACGATATATGTGTTTTCCTTTTGATATATAAAATCAAAATGGATTAGGAAAGAAAAACAGGACTAGGCAGCTTGGGCACTATACATATACATAAGCCAAGCTTCTTATTCTTGGGTTTGTTCCTTCAGCAGTGTAATCAGGCAGGCAGCAGCGCCTCTCCTCTCTTATTCTTCATTTATTATTTACTTCAACACAAAAACAGAAAGATCTTCGGTTGCTTCGACAACTTGTAGAACAGATCCTCGTGTTGAAACCGAGGAGGCGTCAACACCGAGGTTCGACAAAGACTGACACGGTTCTTCCGGGCACGGTGAACCTGCCCGTCGCGGCCTCGTACGCCGATTTCCTC | |||||||||
gi|14528549|gb|AV836460.1|AV836460 AV836460 K. Sato unpublished cDNA library: Hordeum vulgare subsp. vulgare seedling leaves sec CTGCGACAAGTAATTCCGGAC EST sequence (targeted fragment marked with yellow): ATAATTTTAGTACACTGGNGNGTCGCACATTTGCAGNAATAGTTGCATTGCATGTGATTAATATATTTAGCGGAAAATTTTGGTGGTGGCCTAGATGAAATGAGATTTTGCAAGTACGGCTGCCTAGGAGATAAAACTAGATAAATGAAATTACTGTAAGATATTTTTTATATCATCATCGTGTGTGTTTGGTCAAAGATAACATACCGCCCCCAACTTTTTAGTACTCCCTCCGTCCGGAAATACTTGTCACAAGAATGGATGTATCTAGATTTATTTTAGTTCTAGATATATCTTTTTTTATTCATTTATGCGACAAGTAATTCCGGATGCAGGGAGTAGAAAATTGTTGCTTGAGATGCTTAAATGGTGTGTCGCAGCAATTATATTCTTCTCCCTCGTATGCATATAATACACTTCAGGAGTAATCCATCGTGGTCATTAATAATTGAAATTTAAACTACAGCTACTTTACATGAAAATGCTTTCATTGGTTGTGATGATTATTTATAAACAAATTTGTGAAGTGAATAGAGCTCATTTACCCAAAGTTATGTGAAATGCTAACAATACTTCAGCTAATAATTATCCGCAACTACAGACTGA | |||||||||
gi|21156556|gb|BJ478065.1|BJ478065 BJ478065 K. Sato unpublished cDNA library, strain H602 adult, heading stage top three leaves CTGCGACAAGTAATTCCGGAC EST sequence (targeted fragment marked with yellow): GCATTAGCACGATGTGCTTAAGGTGATAATTTTAGTACACTGGAGAGTCGCACATTTGCAGAATAGTTGCATTGCATGTGATTAATATATTTAGCGGAAAATTTTGGTGGTGGCCTAGATGAAATGAGATTTTGCAAGTACGGCTGCCTAGGAGATAAAACTAGATAAATGAAATTACTGTAAGATATTTTTTATATCATCATCGTGTGTGTTTGGTCAAAGATAACATACCGCCCCCAATTTTTTAGTACTCCCTCCGTCCGGAAATACTTGTCACAAGAATGGATGTATCTAGATTTATTTTAGTTCTAGATATATCTTTTTTTATTCATTTATGCGACAAGTAATTCCGGATGCAGGGAGTAGAAAATTGTTGCTTGAGATGCTTAAATGGTGTGTCGCAGCAATTATATTCTTCTCCCTCGTATGCATATAATACACTTCAGGAGTAATCCATCGTGGTCATTAATAATTGAAATTTAAACTACAGCTACTTTACATGAAAATGCTTTCATTGGTTGTGATGATTATTTATAAACAAATTTGTGAAGTGAATAGAGCTCATTTACCAAAGTTATGTCAAATGCTAACAATACTTCAGCTAATAATTATCCGCAACTACAGACTGAACTCCTTTTCTTGTT | |||||||||
gi|94337412|gb|BY858979.1|BY858979 BY858979 Etiolated seedling shoot Hordeum vulgare subsp. vulgare cDNA clone baet112e10 3', mR CTGCGACAAGTAATTCCGGAC EST sequence (targeted fragment marked with yellow): CACCGGAGCCGCCCGGGAGCGCGCGGACTCCACCGACGAAGCTGTCGTCGCCGCCCGCGCTGCGCGGCAACGGCACCAACGGCACCACGGCGTCATTGCCGCCGGCATCGTCGTCTTGGGCAAAGGGAACATCAGTTGGGTGGAGGTGTATAGCATTCTTGTATCTACTACCAGTACTGCTGCCCCTGGTATGATGAGATCCGGTGGTGAGCTAGTCCATTGCCGTCTCTCCTTGCTGAGAGCTCAATTCTTTTTTTCTTTTTCTTTTTTGCTTGCTTTGGTTACTACTCCCTCCGTCCGGAATTACTTGTCCCAACGAGGGCTAGAGGTGGAGGGAGCACTATTGTTTCTTC | |||||||||
gi|21804580|gb|BQ663447.1|BQ663447 HU02K24u HU Hordeum vulgare subsp. vulgare cDNA clone HU02K24 3-PRIME, mRNA sequence CTGCGACAAGTAATTCCGGAC EST sequence (targeted fragment marked with yellow): AAGACAAGTACACGTGTTAATGTCATATAAACCATAATCTGGATTTCCAGGTATTAGTAAATTATTACATCAACCCGACTTGCATAACCCTACTACACCTACAGAGAGATTCCAGTTACACATAAACAAAGCAAAAATATCCTTGTTAAATACACTGTTTCATACAAACGTCCCGAAATGCAGGTCGCGCTCCCCCTGTTCTAAATTACTTGTCGCATAAATGGATAAAAATGAATGTATCTAGAATTAAAATACGTCTAGATATGTCTAGACACTCATCGCAAAAAAAAGATATGTCTAGACACAAGTCATCAAGCATTGCGGTGCCCAAAGGCACAATGGCGCAGCTCCTTCATCATCCCTGTACTAAGAAAGATGGATATCCTTGCGCAGAAATAAACGGCTGGACATCCTCATTGGTTCTTCGGTCCAAGTACAACCTTGAGGACCGATCCAGAACCAATTCTCTATCATTCCAATCCATACCGACAGCAGCTTGTGTGGTACTTCAAGCTGTTGACGACAAGATTTACTCAAAGGTTGAGACACATGGATATGTTGTAAGCTTGTAAACCCAGCTGGATGG | |||||||||
gi|161477231|gb|EX595506.1|EX595506 HDP24I23w HDP Hordeum vulgare subsp. vulgare cDNA clone HDP24I23, mRNA sequence CTGCGACAAGTAATTCCGGAC EST sequence (targeted fragment marked with yellow): AGCGGACGCCTCCGACGCAACTGTTCCCCTCTACACCAATACTGCGGTCGTCGGCTGGTCGTTCATCGACTGGGCGTGAGGTGGTGGAAGGGGCCTTGAGATTTCCACGTTGGATTGTTGGGGAAGAAGAGGTCATTTGCTGCAGGCAAGGGAGAGGCACCAGATTCCAGATTACCAACCATCGGTGGCTTATTTTGAAGAGGATTACAGAATCTTCATATTGAAGATGGCCACTTACAGTTTCATCTAAACAACGGGGTTTCCAACTTTTGGAGGGCCTAGATTTGTGAATGTTGGAGTGTATAGACATTCCCATGCCATCATATTGGGGGTCTGCAGTCCAGTCTTATCTTTCTTACCCTGAGTATTATTAACTATCTAACATGTTCACTGAAATTGTACCATCTTATTTGTTGGCTGATTTTTGTTTGTTTGTTATAATACACGGAGAGCTACACAAGTACTCCCTCCGTCAGGAATTACTTGTCGCACAAATGTATAAAAATGGATGTATCTAAAACTAAAATACATCTAGATACATTCATTCCT | |||||||||
gi|161438045|gb|EX580170.1|EX580170 HDP30A17w HDP Hordeum vulgare subsp. vulgare cDNA clone HDP30A17, mRNA sequence CTGCGACAAGTAATTCCGGAC EST sequence (targeted fragment marked with yellow): CGAACATGAGGACTAAAGATGGACAGAAGAAGATTTTTCTCAAAGGCTTCCCTTCCTTACAAGTGCAAGAACTTATCTGCGTTCATACACCTATACCCGTCCGCGCTCAACTGAACCGCAAACGCAAACGGAAGCAGTGACTGGCCAAGGACAGTCGGATTGATTTAGGATGTTTTTTGTTTTTCATTACATATTCATCATATAAATGAAAATTTTCATGTCTAGTACTCCCTCTGTTCAGAATTACTTATCGCATAAATGAATAAAAATAGATGTATCTAAAACTAAAATACATCTAGATACATTCGTTTCTATGACAAGTATTTTCGAACGGAGGGAGTACGTAGTAATTTATAGATAGTGTATGGTTGGTGCTTCCGCGAAGCATCCAATCCCACTGTTAACGACCCTCTCCTGTGATGATGCACTTGATCCTAGCCCTTGAAGGTACAGTATCATCTACGT | |||||||||
gi|161445355|gb|EX598507.1|EX598507 HDP07H09w HDP Hordeum vulgare subsp. vulgare cDNA clone HDP07H09, mRNA sequence CTGCGACAAGTAATTCCGGAC |