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mature miRNA: GATTTGTCCACGTCATCACAA
species: Hordeum vulgare
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|16333420|gb|BG417996.2|BG417996 HVSMEk0020I18f Hordeum vulgare testa/pericarp EST library HVcDNA0013 (normal) Hordeum vulgare

GATTTGTCCACGTCATCACAA
.||||||||||.|||||| |
TTAAACAGGTGTAGTAGTATC

EST sequence (targeted fragment marked with yellow):
TTTAGCTGGCCTCTCCCACGCTGTGGCGGCCGCCCTCAACTGATGGATCCCCCAGGCTGGAGGAGAACTAGTACGGTACCACTCCTGCTGGGATACACGATCAGAAGTGAACAACCTTGCTCTCCCTGGTCAAAGCGTACGGAGTCTCTAGAAACGACTTCACATCTTTTTTGGGTAATCACTACTCACAGAGTTTGGCAACTATATACTCTCTCTGTATTTCTTTAAACATATGGTTGATCATTCGTCTTATTTAAATTTTTTTATGCAAATATATAAAATATAAATCATACTTAAAGTACTTTGTGCAATAAAACAACTCACACCAAAATAAATTATAATTATATATATATATATATATATTTAAAATAAAATGAATAATCAAACATATGAATGTCATTTATTAAAAAAGAAGTAGTATATGATTGTAAGTGATTGAAAATTATAGTTCAGCTTCTAACAATTTTGAGGGAAAATATGTGGTGGAAATCACATATATATTAGAAATTTAGAAACTACTGTTAGATAAAAAAAGGACGTTCGAGATTTGTCCACGTCATCACAAGTAAAAAGTTTACTCATGGATTTATTGATGAGTCACGGTGAAATTTTTACTATGATGATGTGGACAAATTCCGAACATCCATTTTCGATCCAATAGATGTTTCAAGTTTGTACCATATATTTCCCAAAATAAGGACATGTGTTTTGCAAGATTTTCTTTAGGGTTGCGGCTTAAAAAATAGTTTAGGATTAATTAAACATTTACCTTTGTTGTTTTTAGTGGCCCGAATTTCAAAAATAAACAAATTGACCGCGTAAGAAAGAACATCTATTACTTAGGGTGGTGGAAATTAAAAGGTGGCGTGCGTGCAAACAAAGGGCGAAACAAGCCCTACGTCGCCCGCGAGAATGCAGCAGCTTGCCCCCCTACCTTTTCGTTCGTGGCCCGGCGCATATATTCCGAATGAGGCGTTCCT



gi|16292665|gb|BI950510.1|BI950510 HVSMEl0021B08f Hordeum vulgare spike EST library HVcDNA0012 (Fusarium infected) Hordeum vulga

GATTTGTCCACGTCATCACAA
| |||||||||.||||| | |
CGAAACAGGTGTAGTAGCGGT

EST sequence (targeted fragment marked with yellow):
ANGCCATGGGGGACCAGCACGGGGCGANCANCTCATCTCACATGACACAAAGAGTTTTATCTATAACTACAAGTACACTTTCTCGGTCGAGATCTGCCCCATATGCCGTGAGGACCTGATTGCCCTCAGCCCCAAGGCGTCCCGTGATCTTGGTGGGCTAGGCCCGCTGGGGGGGGGCGGCCAAGTCACCAATGCCATTGCGCTGCTTGACCCCCTCACTCTGCGTGTGCACCATCTGGAGGAGAAGAAGTACAGGGTGTACAACTTGAAGGCCGCTCTGACTAGCAAGCAGCTCGTGCAGTACATGGTGCTTGATATTGAGCCAGAGTCACCTGAGATCACCATTGATGGATCTCGGTACCAGCTGGCATATGCGCAGGTGGCCCGGATGTCTGATTTTGGGAAAAATGATACTGGGTTTACAGGGACGAACTCATCTTNGGCACCGGGTGAACCCTGGGGACCTTGCCCTTGAGTATGATCTCTTCGGGGCCGACATGAATGGCGATGATGTGGACAAAGCTTTATGACGCCGGAATTGGCGTGAAGTGAGTTCTGGGGAGAAGGACGTTGAGAGAGGCGGACCGACCGCAGATGGAAGCTAAAAGGCTCGCTGTGGANAGGGACCTGGGAGCGAGGCGAGGGGNAGGAAGATGGGAGGGAGGANAGTGAGAGAAGAGATGGAAGAGTNGGAGCGCGACGAGAAGAAGGGGAGCGAGGAGCGGGTCGAGAGCCAGGACGGCGGGGGAGATGGCGTCCCGGGTGCGAGAGGTCGNCTGCGGGGCGATTGAGGGGCGGGAGGGGGGCGAGGCGNTGGCGGTGGCAGGGGGGAGGGAGGAGGCGGCCAGGCGCGAGAGGGGCGG



gi|21972946|gb|BQ764474.1|BQ764474 EBan01_SQ005_P20_R anther, yellow stage, no treatment, cv Optic, EBan01 Hordeum vulgare subsp

GATTTGTCCACGTCATCACAA
||||..|||||.||| ||||
GTAAATGGGTGCGGTATTGTT

EST sequence (targeted fragment marked with yellow):
GCCGTAGGATATGTTAAGTGGGCTGCCGATAAACTCAAGGAGGCTGCTGCTGCCCCGCCCGAAAAGGCCGTCCTCCTCAAGAATGAAGCTCAAACGTACTTAGAACGTGCCAATGCCCTCAACGAGAAAGCCGGGACCCCGTGAGTGTGCACCCTTCCGTCTATAGGTGTTGCTGTTGTTATGGCGTGGGTAAATGTTTTGTTTACTTAAATTGTAGTGGTTGCATCCCTTTTTTTTTATTTTTTAAACTAATATCTTTTGTATTGTGACGACAATCTTGTTCCAGCGACTCAGTTTCTCTTGGCGACTTTACTTATGTATAATGATTTTCATTTGATTTGGCTATGTAATAATGAAGTTCCTTCGTATGGAAATGTTCCTTTTTAATGCCCACAGTGCATATTGTACTATTTTATCTC



gi|16312076|gb|BF255931.2|BF255931 HVSMEf0008D22f Hordeum vulgare seedling root EST library HVcDNA0007 (Etiolated and unstressed

GATTTGTCCACGTCATCACAA
| |||||||||||||.| | |
CGAAACAGGTGCAGTGGCGCT

EST sequence (targeted fragment marked with yellow):
AGCTCTAAGGCACCCGCCGTCTCCTACCACCTACCGACCACCACCCTCAGCCATGGCCGTAGCGGAGCCGGTGCCCGGCGGCGACGTGAAGCTCTTCAACCGCTGGACCTTCTAGGATGTTCAAGTGACCGACATGTCGCTGAACGACTACCTCGCGGTGACGTGGACAAAGCACTACACCTTCCTGCCGCACTCCGCCGGGCGCTACTCGGACAAGCGCTTCCGCAAGGCGCAGTGCCCCATCATCGAGCGCCTCACCAACTCCCTCATGATGCACGGACGCAACAACGGCAAGAAGATCATGGCCGTACGCATCATCAAGCACACCATGGAGATCATACACCTGCTCACCGACGCCAACCCCATCCACATCATCGAATACGCCATCATGAACAGTGGGCCACGTGAGGATGCTACCCGTATTGGGTCATCTGGTGTTGTGAGGAGACAGGCT