mature miRNA: GATTTGTCCACGTCATCACAA species: Hordeum vulgare database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
Predicted miRNA targets | |||||||||
gi|16333420|gb|BG417996.2|BG417996 HVSMEk0020I18f Hordeum vulgare testa/pericarp EST library HVcDNA0013 (normal) Hordeum vulgare GATTTGTCCACGTCATCACAA EST sequence (targeted fragment marked with yellow): TTTAGCTGGCCTCTCCCACGCTGTGGCGGCCGCCCTCAACTGATGGATCCCCCAGGCTGGAGGAGAACTAGTACGGTACCACTCCTGCTGGGATACACGATCAGAAGTGAACAACCTTGCTCTCCCTGGTCAAAGCGTACGGAGTCTCTAGAAACGACTTCACATCTTTTTTGGGTAATCACTACTCACAGAGTTTGGCAACTATATACTCTCTCTGTATTTCTTTAAACATATGGTTGATCATTCGTCTTATTTAAATTTTTTTATGCAAATATATAAAATATAAATCATACTTAAAGTACTTTGTGCAATAAAACAACTCACACCAAAATAAATTATAATTATATATATATATATATATATTTAAAATAAAATGAATAATCAAACATATGAATGTCATTTATTAAAAAAGAAGTAGTATATGATTGTAAGTGATTGAAAATTATAGTTCAGCTTCTAACAATTTTGAGGGAAAATATGTGGTGGAAATCACATATATATTAGAAATTTAGAAACTACTGTTAGATAAAAAAAGGACGTTCGAGATTTGTCCACGTCATCACAAGTAAAAAGTTTACTCATGGATTTATTGATGAGTCACGGTGAAATTTTTACTATGATGATGTGGACAAATTCCGAACATCCATTTTCGATCCAATAGATGTTTCAAGTTTGTACCATATATTTCCCAAAATAAGGACATGTGTTTTGCAAGATTTTCTTTAGGGTTGCGGCTTAAAAAATAGTTTAGGATTAATTAAACATTTACCTTTGTTGTTTTTAGTGGCCCGAATTTCAAAAATAAACAAATTGACCGCGTAAGAAAGAACATCTATTACTTAGGGTGGTGGAAATTAAAAGGTGGCGTGCGTGCAAACAAAGGGCGAAACAAGCCCTACGTCGCCCGCGAGAATGCAGCAGCTTGCCCCCCTACCTTTTCGTTCGTGGCCCGGCGCATATATTCCGAATGAGGCGTTCCT | |||||||||
gi|16292665|gb|BI950510.1|BI950510 HVSMEl0021B08f Hordeum vulgare spike EST library HVcDNA0012 (Fusarium infected) Hordeum vulga GATTTGTCCACGTCATCACAA EST sequence (targeted fragment marked with yellow): ANGCCATGGGGGACCAGCACGGGGCGANCANCTCATCTCACATGACACAAAGAGTTTTATCTATAACTACAAGTACACTTTCTCGGTCGAGATCTGCCCCATATGCCGTGAGGACCTGATTGCCCTCAGCCCCAAGGCGTCCCGTGATCTTGGTGGGCTAGGCCCGCTGGGGGGGGGCGGCCAAGTCACCAATGCCATTGCGCTGCTTGACCCCCTCACTCTGCGTGTGCACCATCTGGAGGAGAAGAAGTACAGGGTGTACAACTTGAAGGCCGCTCTGACTAGCAAGCAGCTCGTGCAGTACATGGTGCTTGATATTGAGCCAGAGTCACCTGAGATCACCATTGATGGATCTCGGTACCAGCTGGCATATGCGCAGGTGGCCCGGATGTCTGATTTTGGGAAAAATGATACTGGGTTTACAGGGACGAACTCATCTTNGGCACCGGGTGAACCCTGGGGACCTTGCCCTTGAGTATGATCTCTTCGGGGCCGACATGAATGGCGATGATGTGGACAAAGCTTTATGACGCCGGAATTGGCGTGAAGTGAGTTCTGGGGAGAAGGACGTTGAGAGAGGCGGACCGACCGCAGATGGAAGCTAAAAGGCTCGCTGTGGANAGGGACCTGGGAGCGAGGCGAGGGGNAGGAAGATGGGAGGGAGGANAGTGAGAGAAGAGATGGAAGAGTNGGAGCGCGACGAGAAGAAGGGGAGCGAGGAGCGGGTCGAGAGCCAGGACGGCGGGGGAGATGGCGTCCCGGGTGCGAGAGGTCGNCTGCGGGGCGATTGAGGGGCGGGAGGGGGGCGAGGCGNTGGCGGTGGCAGGGGGGAGGGAGGAGGCGGCCAGGCGCGAGAGGGGCGG | |||||||||
gi|21972946|gb|BQ764474.1|BQ764474 EBan01_SQ005_P20_R anther, yellow stage, no treatment, cv Optic, EBan01 Hordeum vulgare subsp GATTTGTCCACGTCATCACAA EST sequence (targeted fragment marked with yellow): GCCGTAGGATATGTTAAGTGGGCTGCCGATAAACTCAAGGAGGCTGCTGCTGCCCCGCCCGAAAAGGCCGTCCTCCTCAAGAATGAAGCTCAAACGTACTTAGAACGTGCCAATGCCCTCAACGAGAAAGCCGGGACCCCGTGAGTGTGCACCCTTCCGTCTATAGGTGTTGCTGTTGTTATGGCGTGGGTAAATGTTTTGTTTACTTAAATTGTAGTGGTTGCATCCCTTTTTTTTTATTTTTTAAACTAATATCTTTTGTATTGTGACGACAATCTTGTTCCAGCGACTCAGTTTCTCTTGGCGACTTTACTTATGTATAATGATTTTCATTTGATTTGGCTATGTAATAATGAAGTTCCTTCGTATGGAAATGTTCCTTTTTAATGCCCACAGTGCATATTGTACTATTTTATCTC | |||||||||
gi|16312076|gb|BF255931.2|BF255931 HVSMEf0008D22f Hordeum vulgare seedling root EST library HVcDNA0007 (Etiolated and unstressed GATTTGTCCACGTCATCACAA EST sequence (targeted fragment marked with yellow): AGCTCTAAGGCACCCGCCGTCTCCTACCACCTACCGACCACCACCCTCAGCCATGGCCGTAGCGGAGCCGGTGCCCGGCGGCGACGTGAAGCTCTTCAACCGCTGGACCTTCTAGGATGTTCAAGTGACCGACATGTCGCTGAACGACTACCTCGCGGTGACGTGGACAAAGCACTACACCTTCCTGCCGCACTCCGCCGGGCGCTACTCGGACAAGCGCTTCCGCAAGGCGCAGTGCCCCATCATCGAGCGCCTCACCAACTCCCTCATGATGCACGGACGCAACAACGGCAAGAAGATCATGGCCGTACGCATCATCAAGCACACCATGGAGATCATACACCTGCTCACCGACGCCAACCCCATCCACATCATCGAATACGCCATCATGAACAGTGGGCCACGTGAGGATGCTACCCGTATTGGGTCATCTGGTGTTGTGAGGAGACAGGCT |