| mature miRNA: GCTGGCGGATGCGACGGTGAT species: Hordeum vulgare database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|24221234|gb|BU970441.1|BU970441 HB14K12r BC Hordeum vulgare subsp. vulgare cDNA clone HB14K12 5-PRIME, mRNA sequence GCTGGCGGATGCGACGGTGAT EST sequence (targeted fragment marked with yellow): GAGGAGAAGACTTTATTAGTTTAACAAGCGTTCTCATACAATGCTTAACATAAACTTATTTTAACACAACCTCATGGATTACATATCTCAAAGAAAGTTGTTGTGAGGCCAGCAACATGGAAAGCGGACGCTTCTCCTCCCGCTGCTAAATTAGTCACTACGCTAGAGGAGGAAATGTGTAACTTCCACACTTGTAGCCATGTGGGAACGGCTTCTTGCAGAAATTGGCAACGTAGCCAACCTTCTCCATACACCATATCTTCTCTTTCTCCTTGGTGACACCAGCGCAAAGGCATGGGATGTTTGCCTTCTGCCACACGGCGCAGCACGCATCTGATGGAGCTAGCTTCGGCTCTGCTGGGAATTTCTGATACTTACCACACTCCCTGATCATGTCTTGTCGATCACCGTCACATCCGCCAGCTGACACAACTACCGCAATAGTGAGGGTGATGAAACATAAGTACATGAGTTTCGCCATGGCTATGGCTTTTGTATCTGCTGCACTAGAGCCTTCTCTATCCCTTTGATGTTAGAATCGAATAATGTAGGATTTGTGTGGCTTCTTTGTGAACCGCAAATCCCCGAACAATTCCGCCATGAGGCAATCCGTGCAATCGTCT | |||||||||
gi|24228957|gb|BU978164.1|BU978164 HA12K24u HA Hordeum vulgare subsp. vulgare cDNA clone HA12K24 3-PRIME, mRNA sequence GCTGGCGGATGCGACGGTGAT EST sequence (targeted fragment marked with yellow): ACATAATTTGAGGAGATAACTTTATTATTTAACAAACGTTCTCATACAATGCTTAACATAAACTTATTTTAGCACAACCTCACAAATTACATATCTCAAAGGAAAGTTGTTGTGAGGCCAGCAACATGGAATGTAAAAGCTGATGCTTCTCCCACTGATAAATCAGTCACTACGCTAGAGGAGGAAATGTGTAACTTCCACACTTGTAGCCATGTGGGAACGGCTTCTTGCAGAAATTGGCAACGTAGCCAACCTTCTTCATACACCATATCTTCTCTTTCTCCTTAGTGACACCAGCGCAAAGGCATGGGATGTTCGCCTTGTGCCACACGGCGCAGCACGCATCTGATGGAGCTAGCTTCGGCTCTGCTGGGAATTTCTGATACTTACCACACTCCCTGATCATGTCTTGTCGATCACCGTCGCATCCGTCAGCTGACACGACTACCGCAATAGTGAGGATGATGAAACATAAGCACATGAGTTTCGCCATGGCTATGGCTTTTGTGTCTGCTGC | |||||||||
gi|217059150|gb|GH223564.1|GH223564 HVSMEl0002A17r2 Hordeum vulgare spike (Fusarium infected) cDNA library HVSMEl (HVcDNA0012)2 GCTGGCGGATGCGACGGTGAT EST sequence (targeted fragment marked with yellow): TTTTTTTTTTTTTTTTTGGAGGAAAAAACTTTATTATATATTTAACAAACGTTCTCACATAATGCTTAACATAAACTTATTTTAGCACAACCTCACAAATTACATATCTCAAAGGAAAGTTGTTGTGAGGCCAGCAACATGGAATATAAAAGCCGACGCTTCTCCCGCTGATAAATTAGCCACTACGCTAGAGGAGGGAATGTGTAACTTCCACACTTGTAGCCATGTGGGAACGGCTTCTTGCAGAAATTGGCAACGTAGCCAACCTTCTCCATGCTCCATATCTTCTCTTTCTCCTTGGTGACACCAGCGCAAAGGCATGGGATGTTCGCCTTCTGCCACACGGCGCAGCACGCATCTGATGGAGCTAGCTTCGGCTCTGCTGGGAATTTCTGATACTTACCACACTCCCTGATCATGTCTTGTCGATCACCGTCGCATCCGCCAGCTGACACGACTACCGCAATAGTGAGGATGATGAAGCATAAGCACATGAGTTTCGCCATGGCTATGGCTTTTGTGTCTGCTGCACTAGAGCCTTCTCTATGCCTTTGATGTTAGAATCTTACAATGT | |||||||||
gi|24298762|gb|CA021418.1|CA021418 HZ40A20r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ40A20 5-PRIME, mRNA sequence GCTGGCGGATGCGACGGTGAT EST sequence (targeted fragment marked with yellow): CGGCACGAGGCTGAAGCACCAGCCGGAACCGGCGCCAGAATGGCCTGGACGGCCGCGGCCTCCCTGTGCTGCCGCCTCGTCCGCGCGCCCCCCGTCCGCCGCCGCTCTCTACGCCGGACCTTGTGCTCCGCCGCGCGGAGCACCGATGCGGTGGACAGGGAGTACGCGGACCTCAATCTCCGCCCCCTCTACCCCAATCGGGGCCATCACCTTCGCATCCGGCAGCACGTGAATCCGCTCAGCGCCTTGTTCGTCGAGCCCACGGAGCCGCCTGAGTGGACGGAGGTGTTCGAGGATCCCCTGCTGCCCCTCATGGTCGACATCGGCTGCGGGAGTGGGAGATTCTTGGTTTGGCTAGCAAAGAACTCCGGTGAAAAGCGGAATTACCTCGGACTGGAAATCCGGCAAAAGCTGGTCGAGCGGACACAGTTCTGGGTTACAGAATTGGGGCTTAGAAATGTTTACTTTATGTTTGCAAATGCAACGGTGTCTTTCGAGCAAATTGTGTCATCATACCCTGGTCCCCTATCGCTTGTTTCAATACTGTGTCCTGATCCCCACTTTAAGAAAAGGCATCACAAGCGAAGAGTTCTACAGACACC | |||||||||
gi|166070124|gb|FD521178.1|FD521178 RUS24B06w HA Hordeum vulgare subsp. vulgare cDNA clone HA28G19, mRNA sequence GCTGGCGGATGCGACGGTGAT EST sequence (targeted fragment marked with yellow): GAGGAGAAGACTTTATTACTTTAACAAACGTTCACATACAATGCTTAACTTAAACTTATTTTAGCACAACCTCAAAAATTACATATCTCAAAGGAAAGTTGTTGTGAGGCCAGCAACATGGAATGTAAAAGCCAATGCTTCTCCCGCTGATAAATTAGTCATTACTCTAGAGGAGGGAATGTGTAACCTGCAAGACAATTCAATTTGACACAACATATAATTAGAAAAGCACAACAATCATATAAAATGCATAACTAAAATCAAGACCCTTTGAGTCCGAAGAAAGAATAATACAAAAAGTTCACTTAATATATTTCACTTACTTCCACACTTGTAGCCATGTGGGAATGGCTTCTTGCAGAAATTGGCAACGTAGCCAACCTTCTCCATACACCATGTCTTCTCTATCTCCTTGGTGACACCGGCGCAAAGGCATGGGATGTTTGCCTTCTGCACCACGGCGCAACACGCATCTGATGGAGCTAGCTTCGGTTCTGCTGGGAATTTATGATACTTACCACACTCCCTGATCATGTCTTGTCGATCACCGTCGCATTCGTCAGCCGACACGACTACCCCAATAGTGAGGATGATGAAACATAAGCACATGAGTTTCGCCATGGCCATGACTTTTGTGTCTGCTACACT | |||||||||
gi|21798229|gb|BQ657096.1|BQ657096 HA09L06u HA Hordeum vulgare subsp. vulgare cDNA clone HA09L06 3-PRIME, mRNA sequence GCTGGCGGATGCGACGGTGAT EST sequence (targeted fragment marked with yellow): ACCATTTGAGGAGAAGACTTTATTAGTTATAAAATGTTCTCATACAATGCTTAACATAAAACTATTTTAGCACAACCTCACAAATTACATATCTCAAAGGAAAGTTGTTATGAGGACAGCAACATGAATATAAAAGCTGCCGCTTCTCCCGCTGATAAATTAGTCACTACGCTAGAGGAGGGAATGTGTAACCTGCAAGACCATTCAATTTGACATACCATATGATGAGAAAAGCACAACAATCATATAAAATGCAAAACTAAAATCAAGGCCGTGTCAATACGAAGAAAGAATAATACAAAAAGTGCATGTATGCAATGCCCATTATCATAATTCACTTAGTAAATTTCACTTACTTCCACACTTGTAGCCATGTGGAACGACTTCTTGCAAAAATTGGCAACGTAGCCAACCTTCTCCATACACGATATCTTCTCTTTCTCCTTGGNGACACCAGCGCAAAGGCATGGGATGTTCGCCTTCTCCCACACGACGCAGCATCCATCTGATGGAGCTAGCTTCGACTCTGCTGGGAATTTCTGATACTTACCACACTTCCTGATCATGTCTTGTCGATCACCGTCGCATCCGTCAGCTGACACGACTACCGCAATAGTGAGGATGATGAAACATAAGCACATG | |||||||||
gi|30598034|gb|CD055809.1|CD055809 HO10F01S HO Hordeum vulgare cDNA clone HO10F01 5-PRIME, mRNA sequence GCTGGCGGATGCGACGGTGAT EST sequence (targeted fragment marked with yellow): CGGCACGAGGGGAAAGCGCTCGCCTGCACGCAGCCAGCCTGGGAAGTACTGTAGCTAGGGCTAGCACCCGCCGCCCCCTCTCCCCAGCGCCGCCGCAGCCGCCAGCGCCCCATGGCCAAGGGCAAGTTCAAGGGCAAGCCCACCGGGCAGCGCACCTTCTCCTCCAAGGAGGAGCTCGAGGCTGGTACTTCAGCTGATCGTCCAAAGACCTTTTCTAAGAAGAAGCAAGAGGTATTTAACAGAAGGGAAGAGTCAATTGAGGAGGAAAGCGATGAAGAGGTTGAGAAGACCAAACACAAAGGCACTGCAGGTCTCATTGACATTGACAATCCAAACCTGGTGAAACCTAAGAGTATTAAAGCCAAGGATGTTGATGTTGATAGGACAGCTGATCTCTCCAGGCGTGAAAGGGAGGAGCTTGAGAAGCAGAGAGCTCGAGCCCACTACATGAGACTTCAGGAGGAAGGAAAGACAGAACAGGCTAGGAAAGACTTAGATCGCCTTACCTTGATCCGGCGGCAGAGGGAGGAAGCT | |||||||||
gi|217061663|gb|GH228062.1|GH228062 HVSMEn0014K19r2 Hordeum vulgare rachis cDNA library HVSMEn (HVcDNA0015)2 Hordeum vulgare sub GCTGGCGGATGCGACGGTGAT EST sequence (targeted fragment marked with yellow): TTTTTTTTTTTTTTTTTAACCGAACGAAACATCATCGAGTAAATCCCGCGGCGCAGTTCGTTACAGCAGTACGAGTAGTGTATACTCCTATATACACAGCATCTGTGCATCAAAATGCCTGTGCGAAAAAGAACAAAGTATACTATGGAGGTCCATGACCATGAGCTTTCATTTCCCGCAGCTCCACCTGGCAGTCGGCACGCAGCTGAGGTAGTGGCACCACTGGCAGTGCTCGTTGCCGTTCACCCCTCGGAAGAGCATCGCCATCCCAACCGCCAGCCCGACGACGACCAGGACCGAGGCCGCGGCGAGCAGAGCCCACTGGTAGGCCAGGAACTTCCGGCCCACGTCCTTGACGGAGGACGGCAGCACGTAGCGCTGCGCCCAGCCGTAGTGCGGGCGCATGAGCAGCACGAACCCGAGCAGGAACCCCGTGAGGAACCCCCCGATGTGCGCGAAGTTGTCCACGTGCGGCAGGATGCCGATCGCCAGGTTCACCGCGATCACGAACAGCAGCGTCACCAGCGCCGCCGCCTTGTTGGT | |||||||||
gi|166072499|gb|FD523560.1|FD523560 RUS64H08w HF Hordeum vulgare subsp. vulgare cDNA clone HF11G03, mRNA sequence GCTGGCGGATGCGACGGTGAT EST sequence (targeted fragment marked with yellow): CTTTATTAGTTTAACAAACGTTCTCATACAATGCTTAACATAAACTTATTTTAACACAACCTCATGGATTACATATCTCAAAGGAAAGTTGTTGTGAGGCCAGCAACATGGAAAACCGACGCTTCTCCCCCCGCTGCTAAATTAGTCACTACGCTAGAGGAGGAAATGTGTAACTTCCACACTTGTAGCCATGTGGGAACGGCTTCTTGCAGAAATTGGCAACGTAGCCAACCTTCTCCATACACCATATCTTCTCTTTCTCCTTGGTGACACCAGCGCAAAGGCATGGGATGTTTGCCTTCTGCCACACAGCGCAGCACGCATCTGATGGAGCTAGCTTCGGCTCTGCTGGGAATTTCTGATACTTACCACACTCCCTGATCATGTCTTGTCGATCACCGTCGCATCCGCCAGCTGACACAACTACCGCAATAGTGAGGATGATGAAACATAAGTACATGAGTTTCGCCATGGCTATGGCTTTTGTATCTGCTGCAC | |||||||||
gi|30083892|gb|CB881899.1|CB881899 HM11D18w HM Hordeum vulgare subsp. vulgare cDNA clone HM11D18 3-PRIME, mRNA sequence GCTGGCGGATGCGACGGTGAT EST sequence (targeted fragment marked with yellow): GTTAGCACGCATTTTTATTTTCGTATATATGAGCACAAAATCAGTACACATGGCAGCATATACAACAGCAAGTACGATCGGTGGAGTCGAAATCAAACAGTACACACACCTGTACGAATAATACCCTCAGCCTTTTATTTTGGTTATTATTATTACTCTCGTGTCACGTAACGTCGCGCGTACGAGTTACGTGCATGATGGACGATGGACGAGGCTATCTAGGCGGCGGTGACGGCGATCTTCATGCCGGACTGGCAGTGTCCGGGGATGCTGCATATGAAGTAGTTTGTGCCGCGGGCGAGGGTGACGCGGTCGGCGCCGGACTTGTAGACCTTGGCGCCCTTGGCCGGCTTGGCGCAGGCCTTGTACCCTGCCGCGCTCACCGACACCACGTCGTGCGCCGTCGCGTCGTACTTGAACACTAGGACGTCGCCGGCCTTGAAGCGCTTGCCGGCGGGCCAGGAGTTGGTGTTGAAGGACCAGCCGCCGCGGTCGCCGACGTTGAACACCGCCGCATCCGCCACCGCTGCGTTCAGGAGCACGCAGACGAGCAGCACGCCCACAACCACGGCTGCACTGCCTCTTCCCTGCGTCGCCATTGCTAGTAATTACCTCAGGAGCTCCTACCGATCAAACACTCACTCC | |||||||||
gi|51525709|gb|CV062570.1|CV062570 BNEL80e4 Barley EST endosperm library Hordeum vulgare subsp. vulgare cDNA clone BNEL80e4 5' s GCTGGCGGATGCGACGGTGAT EST sequence (targeted fragment marked with yellow): GCCGCAGGAATTTTTTTTTTTTTTTTTTTAAAAATAGTCATGACAGAAGCTTCTGCCATCGCTCTGAATCTACGATTTGCATTCATTCAGAGTGAAGCAAGAGCTTGAGAACTGGCATGCGAAGTTCAGGTAAGAAAAGGAGAGGAGTCAAACAATGAATGACGCTATTGCCATTCGCCTGCTGCATGAACATGTTGATGATGATTTGGAAAATTTGAGAAACTAGAATTGTCAAAAATGGAAGGCCAATGCATTTCGTCAGAAACCAAACAGGCCTGAAAATCAATCACTCTGATTTTTGCCCCCCATGGTTGATGTTCCTCTTGTTGTTGGGCTTGGCCTTGGCGGCGGCGTCGTATGCAGCGCCGTGGAAGTCGAGGAAGAGGGCGAGCAGGGAGGCGTTGAAGACGGCGTTGAACGCCCAGCCTGCCATCCCCTCGCATCCGCCGGCGGCGAAGTGGAACCAGAGCATGACGACGGAGGCGGCGAAGCTGAAGAGGAACTGCGCGATCTGCAGCTCGGTGACGGCGCGCTTCCACCGCGGNGGCCAGCGGAGCCCCCGGGTGCAGCAGAGGGTAGTAGAGTACATGACAGGTGCAGGNCGGCGTGGTGACAAGGCGACGGCATGACGACTGCGCGCGGGAGCCAAGTAGACATGGCATACNACGCGTGGNTA | |||||||||
gi|217053453|gb|GH219304.1|GH219304 HVSMEh0081G14r2 Hordeum vulgare 5-45 DAP spike cDNA library HVSMEh (HVcDNA0009)2 Hordeum vul GCTGGCGGATGCGACGGTGAT EST sequence (targeted fragment marked with yellow): TTTTTTTTTTTTTTTTTACATAATTTGAGGAGATAACTTTATTGTTTAACAAACGTTCTCGTACAATGCTTAACATAAACTTATTTTAGCACAACCTCACAAATTACATATCTCAAAGGAAAGTTGTTGTGAGGCCAGCAACATGGAATGTAAAAGCCGATGCTTCTCCCACTGATAAATTAGTCACTGCGCTAGAGGAGGGAATGTGTAACTTCCACACTTGTAGCCATGTGGGAACGGCTTCTTGCAAAAATTCGCAACGTAGCCAACCTTCTCCATACACCATATCTTCTCTTTCTCCTTAGTGACACCAGTGCAAAGGCATGGGATGTTCGCCTTGTGCCACACGGCGCAGCACGCATCTGATGGAGCTAGCTTCGGCTCTGCTGGGAATTTCTGATACTTACCACACTCCCTGATCATGTCTTGTCGATCACCGTCGCATCCGTCAGCTGACACGACTACCGCAATAGTGAGTATGATGCAACATAAGCACATGAGTTTCGCCATGGCTATGGCTTTTGTGTCTGCTGCACTAAAGCCTTCTCTATCCCTTTGATGTTAGAATCCTACAATGTAGGATTTGTGTGGCTTATTT | |||||||||
gi|161476609|gb|EX584291.1|EX584291 HDP04O12T HDP Hordeum vulgare subsp. vulgare cDNA clone HDP04O12, mRNA sequence GCTGGCGGATGCGACGGTGAT EST sequence (targeted fragment marked with yellow): CATTAAAGATTATCTGTGGGCATCGCACAATTTGCTGAATCATTTTCCACTTACAACATCAATGCCTGTATTAAACAACGAAAATGCTATGAACATCCCTAAGGCCAATGTATGAAAACAAAAAACACCTAGCACGCATGGCAGCTCTTCCTGCAAGTGCCATAGTAGTCTGGACTGCCAATCATAAAGACTGGATTCCTGTCGCATTCGCCGGCAGCGGCCCAACTGAAGCAGTTATCATCTTCATCGGTGCAACCATCATCCTCGGATTCCGTCGAAGGTTTTGATTTACCGATCTTGCTTGCATGCATGTGTTTTATGGCAAGCCATTTCTCCCCTTCCACGACAGGACAGGACTCGTACTGACTGTCCTTGTCGGCGACTCCGTCAGGCCTTGAATTGAACAGCAGAACTGCGTTGCCCTTGACGGGTTTCACAGCATAACCAGCACATGCAGAAGGTGTCCCTTCCTTAGCTTGAGTATCCTTCAG | |||||||||
gi|166071257|gb|FD521948.1|FD521948 RUS07D06w HA Hordeum vulgare subsp. vulgare cDNA clone HA07B13, mRNA sequence GCTGGCGGATGCGACGGTGAT EST sequence (targeted fragment marked with yellow): GAGGAGAAGACTTTATTATAACAAACGTTCTCACATAATGGTTAACATAAACTTATTTTAGCACAACCTCACAAATTACATATCTCAAAGGAAAGTTGTTGTGAGGCCAGCAACATGGAATGTAAAAGCCGACGCTTCTCCCGCTGATAAATTAGTCACTACGCTAGAGGAGGGAATGTGTAACTTCCACAGTTGTAGCCATGTGGGAACGGCTTCTTGCAGAAATTGGCAACGTAGCCAACCTTCTCCATGCTCCATATCTTCTCTTTCTCCTTGGTGACACCAGCGCAAAGGCATGGGATGTTCGCCTTCTGCCACACGACGCAGCACGCATCTGATGGAGCTAGCTTCGGCTCTGCTGGGAATTTCTGATACTTACCACACTCCCTGATCATGTCTTCTCGATCACCGTCGCATCCGCCAGCTGACACGACTACCGCAATAGTGAGGATGATGAAGCATAAGCACATGAGTTTCGCCATGGCTATGGCTTTTGTGTCTGCTACACTAGAGCCTTCTCTATGCCTTTGATGTTAGAATCTTACAATGT | |||||||||
gi|40951363|gb|CK565789.1|CK565789 HO01I04w HO Hordeum vulgare cDNA clone HO01I04 3-PRIME, mRNA sequence GCTGGCGGATGCGACGGTGAT EST sequence (targeted fragment marked with yellow): CTTTTATTAGATCAGAAACCAACTTACAAGATCAATTGAATAACTTATTACAGCAATGTACAGCTCGTCGATCCACGCCTTTATGACCTGTTTCCTTATGTTTGTGCCGGGGTATTTCTCGACAAAAATGAGCCCATTCGAGGGAGAAACGACTTTTTCTTTCGCAACTTTCGGTTCGGAACATGGTCCTCGTAGCTACTGCCTGACATGTGCAGCCGTGAATCCTGCTCTTTCAGGTAAGTATCAACAAATGGGCTGCTCACAGGGTTAACCGCACGTTTCGCGGCCTCCTGAATTTTCCGGCGCTGCTCATGGTCAGATCTCCATTTCCTCAGTTGCTGTTCAGCAGCGAGTTTCCCCTCGTTTGCCCTCTCGGCTCTCTCCAATGCAAGTTCAAGAGTTCTCTTCTTTTCATCCATCTCCTTTGTTGCTTCAGTTAGCCTGTCCAGGCTCTCTAGTTCAGACCCTTTCGCGGACTCTACCTGCGCCAGCGCTTCGGTCACCTTCTCATTTGCCAGCTCTTCAGCTTCTTGTGCTTTCTTGCTAAGGGCGTAATACTCACTTAGAGGAAGCGTCACTCCTCTGGGGGAATCCTCGACGTCGCTGGCTTCTTTGCTCTCTTTCAATGCTTGAACCGCCGCAAGTGCTAGCCTCTCAGACGCTTTGGATGCTTCTATTTCTTTCAGAACAGCACATAACC | |||||||||
gi|21202114|gb|AJ486160.1|AJ486160 AJ486160 S00011 Hordeum vulgare cDNA clone S0001100061C10F1, mRNA sequence GCTGGCGGATGCGACGGTGAT EST sequence (targeted fragment marked with yellow): ACTTTATTATTTAACAAACGTTCTCATACAATGCTTAACATAAACTTATTTTAGCACAACCTCACAAATTACATATCTCAAAGGAAAGTTGTTGTGAGGCCAGCAACATGGAATGTAAAAGCTGATGCTTCTCCCACTGATAAATCAGTCACTACGCTAGAGGAGGAAATGTGTAACTTCCACACTTGTAGCCATGTGGGAACGGCTTCTTGCAGAAATTGGCAACGTAGCCAACCTTCTTCATACACCATATCTTCTCTTTCTCCTTAGTGACACCAGCGCAAAGGCATGGGATGTTCGCCTTGTGCCACACGGCGCAGCACGCATCTGATGGAGCTAGCTTCGGCTCTGCTGGGAATTTCTGATACTTACCACACTCCCTGATCATGTCTTGTCGATCACCGTCGCATCCGTCAGCTG | |||||||||