mature miRNA: TATATACTCCCTCCGTCCGGA species: Hordeum vulgare database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
Predicted miRNA targets | |||||||||
gi|166067014|gb|FD518968.1|FD518968 RUS33H01w HB (Hordeum vulgare cv. Barke) Hordeum vulgare subsp. vulgare cDNA clone HB08J08, TATATACTCCCTCCGTCCGGA EST sequence (targeted fragment marked with yellow): GCCTCAGAACAATGTGTACCGTCTCATTAACGATTCATATACCCGTCTACAGTTCCTGATTACTGTAACTTGTTCCATATGCTGCCATGGTAAATTGTTCTGAACTTGCAACATTTCACCTCAAAACATCAGGCGCCACCTCAACTGCTCAGGAACCCAACACAGGGTTCTTCCTATTATTGCTATATACTCCCTCCGTTCCAAAATAAGTGTCGCTGCTTTACTATAAAATTTGTACTAACTTAATACTAAATTTGCGTCACTTATTTTGGGACAGAGGGAGTATATCTTTATACGCAATTGCCTGAAGCAATTGTAGCCAGATGAAGGCAGTACTCATCAGCATGAGTGTGCCGATACCGCACACAATTAGCCTGTATCAGTTTGGTACTTTGGTGAAGACCAGCCACTGATGCATGTCCACTGCAGCACAAC | |||||||||
gi|94334049|gb|BY877604.1|BY877604 BY877604 Germination shoots Hordeum vulgare subsp. vulgare cDNA clone bastl53g02 3', mRNA seq TATATACTCCCTCCGTCCGGA EST sequence (targeted fragment marked with yellow): TCTTGAGTAGGCATTGTGCTGCAAATGGAGTGCTCATAATCCTCCTGGTTGTTTGAGCATCTTGCACGTAAGGGTTTCTTTGCATGCTGAATGAATGGCACCTGACGTGCTGCCAAGTGAAAGCTGCCGTGATATGCTCCCTCCGTCCTAAAATTGTCCTAAAATAAGCGTCTTAAGCTTAGTACAATTTTATACTAGAATCAGTACAAAGTTGAGACAGTTATTTTGGTACGGAGGGAGTATATAACTAGGGTCGAAAAAAGCGACGTGAGAGAGTCCGTCTGATTTTCGTTGTTCATTTGGATTAAAGTATTGAATATATATTTATGCATAGAGAGAATGGCGTTTT | |||||||||
gi|24244247|gb|BU993301.1|BU993301 HD13C17r HD Hordeum vulgare cDNA clone HD13C17 5-PRIME, mRNA sequence TATATACTCCCTCCGTCCGGA EST sequence (targeted fragment marked with yellow): GCTGCAGACCGGTCGTGAGAGACTTAAATGGGAAATTTTCGTTTGTGCTGTATGATCGCTCCACCAGCTCGGTCTTCATGGCTGCTGATGCTGATGGCGGCGTCCCATTTTACTGGGGAGTCGATTCAGAGGGTCATCTTGTAATTTCCGACGATGATGAAATTGTGAAGAACGCCTGTGGAAAATCGTTTGCACCGTTCCCCAAAGGTTTCTTCTTCACGACATCCGGTGGACTGCATAGCTACGAGCATCCTCTGAACGAGGTGAAGCCGGTGCCGAGGGTCGACAGCAAAGGGGAGGTTTGCGGCACAACTTACACGGTCGATGAACAAGCCAAGAAAGATACCGCCGGAATTCCTCGGGTCGGCAGCGCTGCAGATTGGTCTTCACAGTACTGAATCTGTAGATACCGTCCCAAACTTTCAGGCGTATGGTATACTCCTATCTTTGAACCCTGCCGCGGTTAAATACCCCCTTAGAAATGTAAGAGCGTTTGGTGATGTAAACGCTCTTATATTTCTTTACGGAGGGAGTACATACTAATAATTGGGCATTTTGGGATGCCTATGCTCAGTGTGGCCTTTGCCTTGTGCAATTTTTGCCTGCTGGGTGTATTATTATCTTGGTAATTTGTCTGAGTTAAACTGTTGC | |||||||||
gi|91113941|gb|BY875862.1|BY875862 BY875862 Germination shoots Hordeum vulgare subsp. vulgare cDNA clone bastl26a08 3', mRNA seq TATATACTCCCTCCGTCCGGA EST sequence (targeted fragment marked with yellow): ACGAGGTCACGCATGTGAGGCGCTGCATATAATCGGAACCTGGCACAGNTACTGCTCGACCAACTTCCATATGTGGTATTCAAAAGACCTCCAAGGGAAGTGTTATCTGTAGTGTGTATTGGACATTACATCACGTTCCCAGTTTGTTACCTGGGCTGATACAACAATAAGAAAAATAAAGAATAAATGTCTTGGCATACTTTTTATTGTTGTAGTTTCTGTGCCTCATCACTGTGCATGTATGTAACTACTCCCTTTGTCTGAAAATACTTGTTGAAGGAATGGATGTAACTAGATGTATTTTAGTTCTGGATACATCTATTTTAATTAATTTCGGCGATAAGTAATTTCGGACGGAGGGAGTATATGATAATAAATTGTGGTTATGTTGT | |||||||||
gi|94334719|gb|BY868524.1|BY868524 BY868524 Seminal root Hordeum vulgare subsp. vulgare cDNA clone bart42a12 3', mRNA sequence TATATACTCCCTCCGTCCGGA EST sequence (targeted fragment marked with yellow): CCTACGAGGCCATCCAGCACTCCATGGATCTCTATGCCACCTACATTTGCGAGGGCCTGAGAAGGTAGTACATCTGCCGGCGGTGCCAGTTACCACTTGCTCGAGGAACGATGTTGATGAAGAAATTGTGCCTCATAAACAATACATACTTTACATTCTTGTTTTGTGTTATATATTCCCTCGGTCCTAAAATATAATTGTCTCAACTTTGTGCTATCTCTAGTATAAAATTGTATCAAGCTTGAGACACTTATTTTAGAACGGAGGGAGTAAATACCTACATTATATCAAGTACCCATCTTAAGACTTGATTAAGGCAGGTGATAAAAGGAAGACATTCTTTTTCCAGCTACCTTATGTAATATGATTTCTACCTCCAAGATATGTCACTTTCAAC | |||||||||
gi|59943628|gb|DN157734.1|DN157734 GCN001G17u GCN Hordeum vulgare cDNA clone GCN001G17 3-PRIME, mRNA sequence TATATACTCCCTCCGTCCGGA EST sequence (targeted fragment marked with yellow): GCTCGAGCGGCCGCTCATTTACCTTTGCCTCCAGAATCGAGGGCTCTTGCTGAAATTTAAGCACAAGTTGTACAACAAACAAGACCTCCAGGGGCAAATATCTTTACAGTACGAGAACATATATATCGGAGCACAAGTTGTACAACAAAGAAGACCTCCAGGGACAAAGAAGAATCACTGAGCTATCTTCGTGTCCCGTTCTTCCTAGTAGCTGTCTTTTTGGGAGAACGATTTGCCCTTGCAGGACTAACTGTCTGCTCCCTCCATTTTTATGACAAGTAATTTGGGACGGAGGGAGTACATGGTGGAGAACATGACTTTACTAATGGTTCACAACTATACTGAAATGTGTGGAGCGAATCCAAATGACTGCCAACATATTGCCTTGTTTCTTTTCATATGAAGATTGAAGAACAAGCTTCAGTTCACATCAACATGAAGGCATCAAACATACAACCTACATAAGCACAAACGAGTTTGTTAGATGTAAAACGTTGATTCATAAACTAACATGCAGGTAAGTCGCGAGGAGGTAAATGAGGAAGGGGTGCTAGAGGTCTGGAAATTCTGCTTTAGCATCTTTTGAAGGCTTCCTCCTTGCTTTGCT | |||||||||
gi|18225183|gb|AV929386.1|AV929386 AV929386 K. Sato unpublished cDNA library, cv. Haruna Nijo second leaf stage seedling leaves TATATACTCCCTCCGTCCGGA EST sequence (targeted fragment marked with yellow): CGACCTGCTTACTAGTACGGTACAGCCCGTCGTTCCGAACGCCGGCCACGCCATGCCACCGGTGAAGAAGACAAGGAGCCCCATGTCATTCCCGTCGGCGGTGACCCCCGCATCCGCCATGGCCGCCGCATCTCCGCCGGTCGAGGCTATCGAGGTGAGGGTGACGGGCGCTGGCGATAAGCTGCTGGTGGTGAGCGTCGCGTGGCGCCACCGGAAGGGTGCCATGGGAAAGGTGTGCTGCGCGCTCGAGGGCCTTCGGCTCGCCGTCATCTCGGCCAACATCATGGTTGCGTCCGGGACGGTGACGTACACCGCGCTCGTACAGAGGCAGGAAATACATAAGAGCGAAATGAAGGAGTTGATCGAGACTGCAATCGCCCAAAGTTGATGTCGCAGGAAGTACTCGCAAGTACTATGAGTTACTAAGTGAGCAGGTCATGGGATGTTATGCAATGCATCGTTGCATGTTCATCTTAGTTAGTTACAAATAATCATGTGTACTCCAGGATAACAAGAACGCCATGGTGTTTTGGCAAAAACGGAAAGATATTAAATAATACTCCATCCGTCCCAATATAAGTGTTGTTTTTAGTGTTATATTTGTATTAACTTAGTACTAAATTTGTGTCACTTATTTTAGAACGGAGGGAGTATTTAGCAGTCCTACTGTATTTTATGTCTCGTAGTCAATTAATAAGCAAAA | |||||||||
gi|161467174|gb|EX593221.1|EX593221 HDP41D24w HDP Hordeum vulgare subsp. vulgare cDNA clone HDP41D24, mRNA sequence TATATACTCCCTCCGTCCGGA EST sequence (targeted fragment marked with yellow): GCGCGAAGAGATCAGAAGCGCGCATGCTGCAGCTTTTCGTTTGAAAAGGCGTGAAACGGGTCAGGCGGATGAACCAGGGCCATTTAGCAATTGCAAGGTATGGGGAACAGTTGACCCAGACTATGGGCCGGTTTCAGGAACTTTGGATATGAGCGAAACACGGAGAAATTCAAACTACAGCAAGTGGGAGTTGCTCCCGCTTGAGAGCCTGAGAAGCGAGGCTCGGGAACACCATGCCCAAATGGGTGGCGTATCTCTATACAAGATGGACGGAAACAAGTTAGATGACCTTGTTTGTGTGAGGCACAACCGTTCATCTGGCTGAGACAGTGACGCCAGATTTTCCCGGAGATGGCAGCATGTTGACCCTAGGTAGGATCAGTTTCACGAGGTTTGTTGCTTAGCCAGTTATAGGACACTAGCTTAACCACCGAGGGATTCTATGGGGACATAACACCTGTGTACTGAGGCATTCTATATCCTATATTCACGCTGACATGCTTGTGATGCATTTTTTTGGGATCTACTCCCATTGGTACTAAATCAGCGACACTTATTTTGGGACGGAGGGAGTAGATAATATGTAATGATCTGCTATATGACAAGCGTAT | |||||||||
gi|21142833|gb|BJ464326.1|BJ464326 BJ464326 K. Sato unpublished cDNA library, cv. Haruna Nijo germination shoots Hordeum vulgare TATATACTCCCTCCGTCCGGA |