miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse




mature miRNA: TCATCATCATCATCATCATCA
species: Linum usitatissimum
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|295646082|gb|GW867976.1|GW867976 59B01 Flax fiber enriched Lambda ZapII Library Linum usitatissimum cDNA 3', mRNA sequence

TCATCATCATCATCATCATCA
| ||||||||||||||| |||
ATTAGTAGTAGTAGTAGGAGT

EST sequence (targeted fragment marked with yellow):
GATCAGGCNNAACGACTNCCNNGAAGCTCACCGGATCATGANGAAAAATGCCGNGGACTNCNTCAGACTTTACATGCCNATCTCNGTAGAACTTGCACATATTGCATATTACTTGAGCATACTTCCCTTTCGACTNCCTCAACTGAAGAAGGTCAGCATCCGTTAGTTTTACTTGAGTTGTAATATTTATCCCCACGACAACANTGTCTGCTCCAGATGTAAACACGACATCTGCTGCTTCTGGATCTCCATAAATATTTGCTTCAGCAGCAGGGTTAACATTTCCCAAAGCAAAGAAGGCTCCGCCAAGAACTACAATCTTTTTTACTTTGCTTGCAAATGAGGAGTCCCTTTTGATTGCCAAGGCCACATTTGTCAATGGCCCAAGTGCAAGAACGGATACTTCACCAGGGAACTCTAACACCTTGTCAACTAAAAATTCAGCAGCAGTCTTTGGACTTTTCTCTGCGTTTGGTGGAGACAAGTATGTGTTTCCCAGACCATCAGAGCCATGGACAAAGTCAGCAACACGGGGCTTCCCTCCCTTTAGAGGTTCATGAGAGCCCTCTGCAACTGGAATATCAGGACGCCCAGCAATCTCACACAGAAGCAAAGCATTACGAGTGGCATCTTCTGTGGCAACATTACCAAATACTGTTGTGAAGCCTAAGATTTCCACTTCAGGAGTTTGAAATGCCATTAAAATTGCCATGCTATCATCGATCCCAGGGTCTGTATCGATAATAAGCTTCCCAGGCTTAGCAGAAGAAGCAAATAGGCCGTCGGGAACTACACCATTGGCTTGCGCCATTCCGTGATCAATTCTTGGGGATCTCAGACCAGAAACCGGAACGAGAATCAGAGAAACGTGAAGAAATTGCTTTAACAACTGGCTGGACCGGCGAGGGGGAGACAACGGCAACCGCGACGACGAAGTAACCGCGGCTGCGACGTCGATGAGGATGATGATGATGATTAAGGTGAAATTGAGGAGCTGGGC



gi|295645932|gb|GW868383.1|GW868383 63E06 Flax fiber enriched Lambda ZapII Library Linum usitatissimum cDNA 3', mRNA sequence

TCATCATCATCATCATCATCA
|||||||| ||||||. |||
AGTAGTAGCAGTAGTGCTAGA

EST sequence (targeted fragment marked with yellow):
GACTTTCATCNTTTCTCAAGCTGGANCCTCTGATCGACCCGCTTCANNAAGTANCCGTACATNACCGAAGCTGCGTATNCCNGACCGACTCGAAGCTTGCTTATTTGTGCCACGGCTGATGGNTCTCCTANCCTGTTCCCTAGTATAAGAGTGAGATGGTTCTGGATCATCTCGAATGCTTCAGGGGAGTGAAGCTGTTCAAGCTTCTTCTCTTCTTTGCTTGCCCATGTATCAATCCGGCTAGATTGTTCCGACGGGGCCAATGTAGGTATCAATGAGACATTGGCATCCATGAACTTCTGCACAATCAAAGCGTAGAGAATCTCTTCCAATGTCTTTCTCCTTTCGTTAGCCTTCACTTCAGCAATTCTCCTGTAGAGAACCAAGTCGGTTCCTGGAGCAGCAGGCTCGTCGTTAGGCTTCTCCCCCTCTCGATCGGTTTGGAGCTGCTCGAGTTGCTGCTCGACAGCAGCCGGTACAAGGTGGGGATGGCTGACTAAGATCTGAGAGAGAAACTGTCCCACTGGTGACTCCAGCTTAAGGGGAGCAATTGATGAAATGGAGCCATCCGAATTCGGAGATCGTGATGACGATGATGATGATGATGAAGCCCTAACGACAACTGGAGATCTTCTACTTCTCAAAGACACATTTCTACGTCCAGACTTCAAGCCTAATCCAGTGGAGAATTGCTTGATTGGGGACGACGAAACCGGCAAGAGATCCGGCCCACTTGCAGAGACGAATCCTAATCTACTAACGGGAACCGACTGCCTCGAGTACACAAGGCTAGCGGATTGGACAACAGAAGCTGCTTCCATCTTCCAACAGAGAGCTTCTTCGATTACCGCAGCAGCTTACAATCGGAGAAGATTATCGGTCTACGACGGCGGCTGGAAAAAAAACAGAGGCGTGTATTGGTTTGAGAAGAAGAAAGTCGGAAGCAAGG



gi|295645932|gb|GW868383.1|GW868383 63E06 Flax fiber enriched Lambda ZapII Library Linum usitatissimum cDNA 3', mRNA sequence

TCATCATCATCATCATCATCA
||||||||||| ||||||. |
AGTAGTAGTAGCAGTAGTGCT

EST sequence (targeted fragment marked with yellow):
GACTTTCATCNTTTCTCAAGCTGGANCCTCTGATCGACCCGCTTCANNAAGTANCCGTACATNACCGAAGCTGCGTATNCCNGACCGACTCGAAGCTTGCTTATTTGTGCCACGGCTGATGGNTCTCCTANCCTGTTCCCTAGTATAAGAGTGAGATGGTTCTGGATCATCTCGAATGCTTCAGGGGAGTGAAGCTGTTCAAGCTTCTTCTCTTCTTTGCTTGCCCATGTATCAATCCGGCTAGATTGTTCCGACGGGGCCAATGTAGGTATCAATGAGACATTGGCATCCATGAACTTCTGCACAATCAAAGCGTAGAGAATCTCTTCCAATGTCTTTCTCCTTTCGTTAGCCTTCACTTCAGCAATTCTCCTGTAGAGAACCAAGTCGGTTCCTGGAGCAGCAGGCTCGTCGTTAGGCTTCTCCCCCTCTCGATCGGTTTGGAGCTGCTCGAGTTGCTGCTCGACAGCAGCCGGTACAAGGTGGGGATGGCTGACTAAGATCTGAGAGAGAAACTGTCCCACTGGTGACTCCAGCTTAAGGGGAGCAATTGATGAAATGGAGCCATCCGAATTCGGAGATCGTGATGACGATGATGATGATGATGAAGCCCTAACGACAACTGGAGATCTTCTACTTCTCAAAGACACATTTCTACGTCCAGACTTCAAGCCTAATCCAGTGGAGAATTGCTTGATTGGGGACGACGAAACCGGCAAGAGATCCGGCCCACTTGCAGAGACGAATCCTAATCTACTAACGGGAACCGACTGCCTCGAGTACACAAGGCTAGCGGATTGGACAACAGAAGCTGCTTCCATCTTCCAACAGAGAGCTTCTTCGATTACCGCAGCAGCTTACAATCGGAGAAGATTATCGGTCTACGACGGCGGCTGGAAAAAAAACAGAGGCGTGTATTGGTTTGAGAAGAAGAAAGTCGGAAGCAAGG



gi|295645932|gb|GW868383.1|GW868383 63E06 Flax fiber enriched Lambda ZapII Library Linum usitatissimum cDNA 3', mRNA sequence

TCATCATCATCATCATCATCA
| |||||||||||||||||
CGAAGTAGTAGTAGTAGTAGC

EST sequence (targeted fragment marked with yellow):
GACTTTCATCNTTTCTCAAGCTGGANCCTCTGATCGACCCGCTTCANNAAGTANCCGTACATNACCGAAGCTGCGTATNCCNGACCGACTCGAAGCTTGCTTATTTGTGCCACGGCTGATGGNTCTCCTANCCTGTTCCCTAGTATAAGAGTGAGATGGTTCTGGATCATCTCGAATGCTTCAGGGGAGTGAAGCTGTTCAAGCTTCTTCTCTTCTTTGCTTGCCCATGTATCAATCCGGCTAGATTGTTCCGACGGGGCCAATGTAGGTATCAATGAGACATTGGCATCCATGAACTTCTGCACAATCAAAGCGTAGAGAATCTCTTCCAATGTCTTTCTCCTTTCGTTAGCCTTCACTTCAGCAATTCTCCTGTAGAGAACCAAGTCGGTTCCTGGAGCAGCAGGCTCGTCGTTAGGCTTCTCCCCCTCTCGATCGGTTTGGAGCTGCTCGAGTTGCTGCTCGACAGCAGCCGGTACAAGGTGGGGATGGCTGACTAAGATCTGAGAGAGAAACTGTCCCACTGGTGACTCCAGCTTAAGGGGAGCAATTGATGAAATGGAGCCATCCGAATTCGGAGATCGTGATGACGATGATGATGATGATGAAGCCCTAACGACAACTGGAGATCTTCTACTTCTCAAAGACACATTTCTACGTCCAGACTTCAAGCCTAATCCAGTGGAGAATTGCTTGATTGGGGACGACGAAACCGGCAAGAGATCCGGCCCACTTGCAGAGACGAATCCTAATCTACTAACGGGAACCGACTGCCTCGAGTACACAAGGCTAGCGGATTGGACAACAGAAGCTGCTTCCATCTTCCAACAGAGAGCTTCTTCGATTACCGCAGCAGCTTACAATCGGAGAAGATTATCGGTCTACGACGGCGGCTGGAAAAAAAACAGAGGCGTGTATTGGTTTGAGAAGAAGAAAGTCGGAAGCAAGG



gi|295645912|gb|GW868363.1|GW868363 63C09 Flax fiber enriched Lambda ZapII Library Linum usitatissimum cDNA 3', mRNA sequence

TCATCATCATCATCATCATCA
|||||||||||||||||||||
AGTAGTAGTAGTAGTAGTAGT

EST sequence (targeted fragment marked with yellow):
GGTAGNNGNATTTGANGGCGGCNGATATTATGCTTANGTTGTNGTTNTTCTTTCTGTGGTGATGGANCTGTTTGCTGNCCATAGGAACANGTGTGTGTTCCTCTGTATGTCACCTCAAAGATTGTCGNATCTTCATCTGACCTCTGGACTTGCTTTATTGCCCAGCAGTTTTGAGTGNTTCTGTATGTGCACCTGTAATAGCTTCTAGGATATTTGGCTCCAAGTATGTCTTTCTGACCATACTTCCTCCAGCTAAAGCCATCATCAATAGGACCTTCCAATCCATTATCAGAGCTCATTCTAACTTGATCAGTCCATCTAGGCATTGCCTTTCTTTTCTTAGAGGCATCAATTGGTACTTGATAACTATCCTTGCTTCCATCAAAATCCTCACTCCTAGGACTCCCATTCCTGGACAATGGAGATCCAGGAACTCCAGCAGAACCAGTAGCTGCTACTACTGCTGCTGCTGTTGTGCCAGTAACAACAGCTTGCAGAGTTTGCTCCATTGATGATGATGATGATGATGACCCATTATTCTTCCAGTTGAGAATAAATAGAGCCTTCTCATAAGAAGACAATATCCTCTGAACTAGACTGTCTGCAACTTCAACAGCAGATGCCCCCTTGAGATGACAGCTCAGCTGTTTCGCAACTTCCATCCCTTGGATTAGCTCATTCACCACTGTCCTCTGCTCCCAGCTCAATTCTGATCTCTCCATTGGTATACAAATTGGTAATCCAAAACAAACACGATTCTGTTCGCCCTTGAACGATGATCGAGACAGCTTGGACCAATTAGTTCACTAGAAGAAGGAAAAGCTTCAAACTTTAGCCTGCTATAGCTATTGACAGCAGAGAATTGAGAGTGAATAGGCAATATCATGGATTGGGAAGCAAAACCCAGAGGAGAAAAGGTGTTGTTTGGGAGGAAAGTTTGAACCTGCAGCCCGGGGGATCCACTAGTTCTAGAGCGGCCGNNNC



gi|295646048|gb|GW868499.1|GW868499 64G06 Flax fiber enriched Lambda ZapII Library Linum usitatissimum cDNA 3', mRNA sequence

TCATCATCATCATCATCATCA
||||||||||.||||| ||
CTTAGTAGTAGTGGTAGTTGT

EST sequence (targeted fragment marked with yellow):
CCNNNNAGTTTTTTTTTTTTTTTTTTTANNNAAANNNTAATCATAGAANCCTCAAAGTATATTAGAATATAATTTCACATGTATNNAACTCATTCAAGGAAGAAGTGAAATGATANGAAAAAACTANTGGAGCCGCTGAGATGGGCNNTCAATTTGCTGATGCTGATGCGGACCAGCCACACCATTATGATTCAAGCCATCTGATGCTGCCAAACCCAACTGATGATGCTGATGCTGATTCTGATGCTGATGATGGTTAGGAGTAGGAGTAGGAGGCATCACATTCGTCCCTATCCCTTGATGCTGTGCATAGAACATCCGATGTTGCTGATCATTCGGGGGCTGTGGCACGCCGTATTCATATCCGCCACCATTTGCAGCATCCTGATGCTGCAAATGGGAGTAGCCCGGATACTGGTGGGGATGGAATTGCTGGTGGTGATGGAGATGGTAGAGCTGCTGCTGGTGGTTTGTGCTGTACACAATTGATCCCGTTTCTGCTGCCTTCCCACCAGAAGGACTAGGAGGAACATGTTTAGTTGGGTAAATTGGTGGCTGATGTTGTGGCATTGGCATCGGCATTACATAAACAGCCTGAGCAGGATACGGTTGTTGATGGTGATGATGATTCGGGGACGGCGGTGGAAGCGCGTAGTAAGACGACGACGAGATCATCTGCTGTCCTCCTCCTGGACCAGGTTTTAAGTAATGCACCTGTTGTTGATGCTGATGATGTTGATCAAAGAAAGGGTCTTGAATCTGGATTGGAATATGGGTTGATGGGGTTTGACTAGCCGTTACAGTATTATTACTAATCACATTACTACTAGGATGATCGCCATTGTTGTTGGTCTCAATTTGCTTCACAAGTTCACCGGAGTTGTTGTGACCGTTATTCTTTGCCAGGGACGATGAAGCCACCATTGACAATGCAATGCTGCTACTCTNTC



gi|295645932|gb|GW868383.1|GW868383 63E06 Flax fiber enriched Lambda ZapII Library Linum usitatissimum cDNA 3', mRNA sequence

TCATCATCATCATCATCATCA
|||||||||||||| ||||||
AGTAGTAGTAGTAGCAGTAGT

EST sequence (targeted fragment marked with yellow):
GACTTTCATCNTTTCTCAAGCTGGANCCTCTGATCGACCCGCTTCANNAAGTANCCGTACATNACCGAAGCTGCGTATNCCNGACCGACTCGAAGCTTGCTTATTTGTGCCACGGCTGATGGNTCTCCTANCCTGTTCCCTAGTATAAGAGTGAGATGGTTCTGGATCATCTCGAATGCTTCAGGGGAGTGAAGCTGTTCAAGCTTCTTCTCTTCTTTGCTTGCCCATGTATCAATCCGGCTAGATTGTTCCGACGGGGCCAATGTAGGTATCAATGAGACATTGGCATCCATGAACTTCTGCACAATCAAAGCGTAGAGAATCTCTTCCAATGTCTTTCTCCTTTCGTTAGCCTTCACTTCAGCAATTCTCCTGTAGAGAACCAAGTCGGTTCCTGGAGCAGCAGGCTCGTCGTTAGGCTTCTCCCCCTCTCGATCGGTTTGGAGCTGCTCGAGTTGCTGCTCGACAGCAGCCGGTACAAGGTGGGGATGGCTGACTAAGATCTGAGAGAGAAACTGTCCCACTGGTGACTCCAGCTTAAGGGGAGCAATTGATGAAATGGAGCCATCCGAATTCGGAGATCGTGATGACGATGATGATGATGATGAAGCCCTAACGACAACTGGAGATCTTCTACTTCTCAAAGACACATTTCTACGTCCAGACTTCAAGCCTAATCCAGTGGAGAATTGCTTGATTGGGGACGACGAAACCGGCAAGAGATCCGGCCCACTTGCAGAGACGAATCCTAATCTACTAACGGGAACCGACTGCCTCGAGTACACAAGGCTAGCGGATTGGACAACAGAAGCTGCTTCCATCTTCCAACAGAGAGCTTCTTCGATTACCGCAGCAGCTTACAATCGGAGAAGATTATCGGTCTACGACGGCGGCTGGAAAAAAAACAGAGGCGTGTATTGGTTTGAGAAGAAGAAAGTCGGAAGCAAGG



gi|295645932|gb|GW868383.1|GW868383 63E06 Flax fiber enriched Lambda ZapII Library Linum usitatissimum cDNA 3', mRNA sequence

TCATCATCATCATCATCATCA
||||||||||||||||| |||
AGTAGTAGTAGTAGTAGCAGT

EST sequence (targeted fragment marked with yellow):
GACTTTCATCNTTTCTCAAGCTGGANCCTCTGATCGACCCGCTTCANNAAGTANCCGTACATNACCGAAGCTGCGTATNCCNGACCGACTCGAAGCTTGCTTATTTGTGCCACGGCTGATGGNTCTCCTANCCTGTTCCCTAGTATAAGAGTGAGATGGTTCTGGATCATCTCGAATGCTTCAGGGGAGTGAAGCTGTTCAAGCTTCTTCTCTTCTTTGCTTGCCCATGTATCAATCCGGCTAGATTGTTCCGACGGGGCCAATGTAGGTATCAATGAGACATTGGCATCCATGAACTTCTGCACAATCAAAGCGTAGAGAATCTCTTCCAATGTCTTTCTCCTTTCGTTAGCCTTCACTTCAGCAATTCTCCTGTAGAGAACCAAGTCGGTTCCTGGAGCAGCAGGCTCGTCGTTAGGCTTCTCCCCCTCTCGATCGGTTTGGAGCTGCTCGAGTTGCTGCTCGACAGCAGCCGGTACAAGGTGGGGATGGCTGACTAAGATCTGAGAGAGAAACTGTCCCACTGGTGACTCCAGCTTAAGGGGAGCAATTGATGAAATGGAGCCATCCGAATTCGGAGATCGTGATGACGATGATGATGATGATGAAGCCCTAACGACAACTGGAGATCTTCTACTTCTCAAAGACACATTTCTACGTCCAGACTTCAAGCCTAATCCAGTGGAGAATTGCTTGATTGGGGACGACGAAACCGGCAAGAGATCCGGCCCACTTGCAGAGACGAATCCTAATCTACTAACGGGAACCGACTGCCTCGAGTACACAAGGCTAGCGGATTGGACAACAGAAGCTGCTTCCATCTTCCAACAGAGAGCTTCTTCGATTACCGCAGCAGCTTACAATCGGAGAAGATTATCGGTCTACGACGGCGGCTGGAAAAAAAACAGAGGCGTGTATTGGTTTGAGAAGAAGAAAGTCGGAAGCAAGG



gi|295646048|gb|GW868499.1|GW868499 64G06 Flax fiber enriched Lambda ZapII Library Linum usitatissimum cDNA 3', mRNA sequence

TCATCATCATCATCATCATCA
||| |||||||| ||||| ||
AGTTGTAGTAGTCGTAGTTGT

EST sequence (targeted fragment marked with yellow):
CCNNNNAGTTTTTTTTTTTTTTTTTTTANNNAAANNNTAATCATAGAANCCTCAAAGTATATTAGAATATAATTTCACATGTATNNAACTCATTCAAGGAAGAAGTGAAATGATANGAAAAAACTANTGGAGCCGCTGAGATGGGCNNTCAATTTGCTGATGCTGATGCGGACCAGCCACACCATTATGATTCAAGCCATCTGATGCTGCCAAACCCAACTGATGATGCTGATGCTGATTCTGATGCTGATGATGGTTAGGAGTAGGAGTAGGAGGCATCACATTCGTCCCTATCCCTTGATGCTGTGCATAGAACATCCGATGTTGCTGATCATTCGGGGGCTGTGGCACGCCGTATTCATATCCGCCACCATTTGCAGCATCCTGATGCTGCAAATGGGAGTAGCCCGGATACTGGTGGGGATGGAATTGCTGGTGGTGATGGAGATGGTAGAGCTGCTGCTGGTGGTTTGTGCTGTACACAATTGATCCCGTTTCTGCTGCCTTCCCACCAGAAGGACTAGGAGGAACATGTTTAGTTGGGTAAATTGGTGGCTGATGTTGTGGCATTGGCATCGGCATTACATAAACAGCCTGAGCAGGATACGGTTGTTGATGGTGATGATGATTCGGGGACGGCGGTGGAAGCGCGTAGTAAGACGACGACGAGATCATCTGCTGTCCTCCTCCTGGACCAGGTTTTAAGTAATGCACCTGTTGTTGATGCTGATGATGTTGATCAAAGAAAGGGTCTTGAATCTGGATTGGAATATGGGTTGATGGGGTTTGACTAGCCGTTACAGTATTATTACTAATCACATTACTACTAGGATGATCGCCATTGTTGTTGGTCTCAATTTGCTTCACAAGTTCACCGGAGTTGTTGTGACCGTTATTCTTTGCCAGGGACGATGAAGCCACCATTGACAATGCAATGCTGCTACTCTNTC



gi|295645912|gb|GW868363.1|GW868363 63C09 Flax fiber enriched Lambda ZapII Library Linum usitatissimum cDNA 3', mRNA sequence

TCATCATCATCATCATCATCA
||||||||||||||||||
AGTAGTAGTAGTAGTAGTTAC

EST sequence (targeted fragment marked with yellow):
GGTAGNNGNATTTGANGGCGGCNGATATTATGCTTANGTTGTNGTTNTTCTTTCTGTGGTGATGGANCTGTTTGCTGNCCATAGGAACANGTGTGTGTTCCTCTGTATGTCACCTCAAAGATTGTCGNATCTTCATCTGACCTCTGGACTTGCTTTATTGCCCAGCAGTTTTGAGTGNTTCTGTATGTGCACCTGTAATAGCTTCTAGGATATTTGGCTCCAAGTATGTCTTTCTGACCATACTTCCTCCAGCTAAAGCCATCATCAATAGGACCTTCCAATCCATTATCAGAGCTCATTCTAACTTGATCAGTCCATCTAGGCATTGCCTTTCTTTTCTTAGAGGCATCAATTGGTACTTGATAACTATCCTTGCTTCCATCAAAATCCTCACTCCTAGGACTCCCATTCCTGGACAATGGAGATCCAGGAACTCCAGCAGAACCAGTAGCTGCTACTACTGCTGCTGCTGTTGTGCCAGTAACAACAGCTTGCAGAGTTTGCTCCATTGATGATGATGATGATGATGACCCATTATTCTTCCAGTTGAGAATAAATAGAGCCTTCTCATAAGAAGACAATATCCTCTGAACTAGACTGTCTGCAACTTCAACAGCAGATGCCCCCTTGAGATGACAGCTCAGCTGTTTCGCAACTTCCATCCCTTGGATTAGCTCATTCACCACTGTCCTCTGCTCCCAGCTCAATTCTGATCTCTCCATTGGTATACAAATTGGTAATCCAAAACAAACACGATTCTGTTCGCCCTTGAACGATGATCGAGACAGCTTGGACCAATTAGTTCACTAGAAGAAGGAAAAGCTTCAAACTTTAGCCTGCTATAGCTATTGACAGCAGAGAATTGAGAGTGAATAGGCAATATCATGGATTGGGAAGCAAAACCCAGAGGAGAAAAGGTGTTGTTTGGGAGGAAAGTTTGAACCTGCAGCCCGGGGGATCCACTAGTTCTAGAGCGGCCGNNNC