| mature miRNA: TGCACTGCCTCTTCCCTGGCT species: Manihot esculenta database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|182639708|gb|FF535913.1|FF535913 CASRI77TF CASR Manihot esculenta cDNA 5', mRNA sequence TGCACTGCCTCTTCCCTGGCT EST sequence (targeted fragment marked with yellow): GGGCACACTCTCTCTTGTATCCTCTTTCTCTCTTTCTCTGTGTGTTTTTGCTTCTTTTGAAGAAATATGGCTGAGGGAAGAGGCAGTGCAGTGGTGGGCATGGTGGCCCTGTGGTTGTTGCTGCTCCATTTTGAGATGGGTAGTGCAGCAACTTATACTGTTGGAGGTTCTAGTGGTTGGACCTTTAACGTTTCTGGCTGGCCTAAAGGAAAACGCTTTAGAGCTGGCGATATAATTGTGTTCAACTATAGTCCTTCAGCACACAACGTAGTGGCAGTGGGGAGGTCTGGATACAGTTCATGCAAAGCTCCAAAAGGTGCAAAAGTTTATACATCAGGCAAGGATAGGATCAAGCTTGTGAAGGGCCAAAACTTCTTTCTCTGCAGCTTTGCTGGCCACTGTCAGGCTGGAATGAAAATAGCCATAACTGCTGTCTGATAAATCTAGCTACCTTGTTAAAAATTTAGAAATATGAGAAATTTTAATTTCTCTTTCACTTTTCTGTATGTTTAATTTTAGGTTTTTGTGTTAAAAATTGTCACTCATGTATGGGTCTGACACAGACTCAATCTGAGTGCTGGTGTGTCTTG | |||||||||
gi|119013381|gb|DV454751.1|DV454751 CV02016B2D11.f1 CV02-normalized library Manihot esculenta cDNA clone CV02016B2D11.f1, mRNA s TGCACTGCCTCTTCCCTGGCT EST sequence (targeted fragment marked with yellow): CGATCCAATTGCACAGGCAATAGGAGCTATTAGTTGCATGATCAGGAAACCAACTGATGGGAAGCTAATGGGATATAATGTTGACTATCTTGGAGCCATAGGAGCTATAGAAGAGGCACTGCAAGGATCAAATGGTAGCCCTGCTTCTGGTTCCCCCTTGGCTGGTAAACTCTTTGTTGTCATGGGAGCTGGTGGAGCTGGAAAGGCCCTTGCTTATGGTGGTTACGAGAAAGGAGCAAGAGTAGTTGTTGCTAATCGCACTTACGAGAAAGCCAAAGAACTTGCTAGTAAAGTTGGAGGAGAAGCAATGACTCTAGCTGAGTTGAAAGAGTTTCATCCAGAAGAGGGAATGATCCTTGCAAATACCACTTCTGTTGGAATGAAACCGAGAATCCACGATACCCCACTTCCTAAGGAAGCTCTGAAGCACTACTCCTTGGTCTTTGATGCAATTTACACACCAAAAATGACCAGGCTCTTAAGAGAAGCACAGGAATCTGGAGCCACTATTGTTTACGGAACCGAGATGTTCATCAATCAAGCATTTGTACAGTTTGAAAGATTCACTGGTTTTTCTGCACCAAAACAATTAATTAGGGATGTGTTGGCAAGAAACACATGAGAAGAAAATTTCCTGAGTGAATCTCTTCTTGCAGCTGAATTTAAATTTTGTTTTTCCAGTATATTGCNNTCAGCAGCTATTCAATTGTTTTCTTGTATGAATAAACTTAATGTTGA | |||||||||
gi|182383173|gb|FF380656.1|FF380656 CASLB77TF CASL Manihot esculenta cDNA 5', mRNA sequence TGCACTGCCTCTTCCCTGGCT EST sequence (targeted fragment marked with yellow): GGGGGCCAAGAAAGAGGCAGAGCAGAAAGCTCATGCTGAGAAGGCAGCAGGAGCAGAGTCTTCATCTGCTGCATCAAATACTGGAAAAGAGAAATCATCAAGTGAGAAGGATGGGGATTCCATGCAGGTTGATAGCCAGCCAGAGAAGAAGGCAGAGCCTGAACCTTCTTTTGAGATTTTGACCAACCCAGCAAGGGTTGTTCCTGCCCAGGAGAAGTTCATTAAATTTATGGAAGATAGCAGATACGCACCAGTGAAGTTAGCACCCTCAGGGTTTGTCCTCCTGAGAGACCTGAAACCAACTGAGCCAGAGGTGCTATCTCTTACAGATGCACCATCATCTACTGTGTCACCTGCAGGCGGTTCAGCTACAGGACAGCAAGGTTCTGCATCAGCCATGGCTGTTGATGAGGAGCCTCAGCCGCCTCAGCCCTTTGAGTACACAACATAATTCTGGTCATGGCGATTTTCACATTGGTCCTCAGTTAAAATCATGTTGCTTGTAACTGGCAGAGAAAATTAAATGCGGCTCAAATGATCACTTCAATCTTGCATGCATGGTGATGGCCAACATAAGCAGGTTTGCTTGTTTCAAGGCTTTCTTATCAGCAGAGTAAACCAATTTTTTTTAGGTACTGGATAGATACATGATATCAACATATA | |||||||||
gi|164383326|gb|DB926840.1|DB926840 DB926840 full-length enriched cassava cDNA library Manihot esculenta cDNA clone CAS01_019_N1 TGCACTGCCTCTTCCCTGGCT EST sequence (targeted fragment marked with yellow): GGCACACTCTCTCTTGTATCCTCTTTCTCTCTTTCTCTGTGTGTTTTTGCTTCTTTTGAAGAAATATGGCTGAGGGAAGAGGCAGTGCAGTGGTGGGCATGGTGGTCCTGTGGTTGTTGCTGCTCCATTTTGAGATGGGTAGTGCAGCAACTTATACTGTTGGAGGTTCTAGTGGTTGGACCTTTAACGTTTCTGGCTGGCCTAAAGGAAAACGCTTTAGAGCTGGCGATATAATTGTGTTCAACTATAGTCCTTCAGCACACAACGTAGTGGCAGTGGGGAGGTCTGGATACAGTTCATGCAAAGCTCCAAAAGGTGCAAAAGTTTATACATCAGGCAAGGATAGGATCAAGCTTGTGAAGGGCCAAAACTTCTTTCTCTGCAGCTTTGCTGGCCACTGTCAGGCTGGAATGAAAATAGCCATAACTGCTGTCTGATAAATCTAGCTACCTTGTTAAAAATTTAGAAATATGAGAAATTTTAATTTCTCTTTCACTTTTCTGTATGTTTAATTTTAGGTTTTTGTGTTAAAAATTGTCACTCATGTATGGGTCTGACACAGACTCAATCTGAGTGCTGGTGTGTCTTGC | |||||||||
gi|164381345|gb|DB921820.1|DB921820 DB921820 full-length enriched cassava cDNA library Manihot esculenta cDNA clone CAS01_005_P1 TGCACTGCCTCTTCCCTGGCT EST sequence (targeted fragment marked with yellow): GGGCGTTCAAAATCTTTGATTTGCTTATTTGTTTGAAAGTTAATGAAATCAGAGACCGAGAATGTTTCTGAGAAGCGGTTCGACGATGAGAATGATACGTAAACGGTCGGCGGTGAAAAGCTTAGTAGCTATAATTCCCTTCTTCGATGTCAATATTTGCTTGGCTTTATCACTTGACAACACTAAACTGGAGGAGCTTCATTGTGGAAGCACACAATTGAGAGTGGCGGATCTGAGATTCAGATGAGGAAGAGGCAGTGCGAGCATTTGGGTTTTCTTTTGTTTTTGGAGGACTGGTCAGCTTGCAAACCCGATCAAGAAAGTTTGGGCATAGATTTATAAAAATAAAAAGGGAAAAATTACTATCAACCCTTTAAATTTTAAGAAATTTACTAATACATTATTATTTTAAAATTATTTTATTAAAATATTTTTTATTTTATAAAATCAAAATTTTAGTTTTTTAATCAATTTATTTTACATTAAAAGAAATTAAATAATATAAATATTTCAAATTATATAACTAAATAACACATATATTAAAATTATAAAA | |||||||||
gi|182382656|gb|FF380140.1|FF380140 CASL655TF CASL Manihot esculenta cDNA 5', mRNA sequence TGCACTGCCTCTTCCCTGGCT EST sequence (targeted fragment marked with yellow): GGGCTCCTCACTGCACACTCTCTCTTGTATCCTCTCTCTCTCTCTCTCTCTTTTTCTGTGTGTTTTTGCTTCTTTTGAAGAAATATGGCTGAGGGAAGAGGCAGTGCAGTGGTGGGCATGGTGGTCCTATGGTTGTTGCTGCTCCATTTTGAGATGGGTAGTGCAGCAACTTATACTGTTGGAGGTTCTAGTGGTTGGACCTTTAACGTTTCTGGCTGGCCTAAAGGAAAACGCTTTAGAGCTGGCGATATAATTGTGTTCAACTATAGTCCTTCAGCACACAACGTAGTGGCAGTGGGGAGGTCTGGATACAGTTCATGCAAAGCTCCAAAAGGTGCAAAAGTTTATACATCAGGCAAGGATAGGATCAAGCTTGTGAAGGGCCAAAACTTCTTTCTCTGCAGCTTTGCTGGCCACTGTCAGGCTGGAATGAAAATAGCCATAACTGCTGTCTGATAAATCTAGCTACCTTGTTAAAAATTTAGAAATATGAGAAATTTTAATTTCTCTTTCACTTTTCTGTATGTTTAATTTTAGGTTTTTGTGTTAAAAATTGTCACTCATGTATGGGTCTGACACAGACTCAATCTGAGTGCTGGTGTGTCTT | |||||||||