| mature miRNA: ATGAAGTGTTTGGGGGAACTC species: Medicago truncatula database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|20456092|gb|BQ255339.1|BQ255339 MTNAH95TKM KVKC Medicago truncatula cDNA clone pKVKC-8H11, mRNA sequence ATGAAGTGTTTGGGGGAACTC EST sequence (targeted fragment marked with yellow): TAAAATGACAAGGGTCTCATACAGAAGAAAGCATCATTAAAACACTAAAGAAATCAAAACATAGAGGTGATTGGACGGCAGAGCATTCTGGTGATTTCTCTCCCTTCAATTCCAAAAGGGATAATTGGAGGTCTCCAATAACACCATGTACTAATAATAGTGCTAAAAACCATTTTTACAATAGTGGTAGTCACAATTTCAGTTCTAAATCTTTTACGCGGAATGTTCATGATGGAACTCCTAATTCAGAAGGATCAACGAGGACTTTTCATCATGGGTACTCAGCTTCTAGGTTTGGCAACTCGAGTAGTAATGGATTTGAGAGAAGTTACAACAACGGGTGGTAGCTTCTCCAGAAATCTAGTCTAGAATAGATTATATTCTTTTTTGACAACTCATTTGCAAGTTTTGAACTCATTCATGCACCCTTCTCATTTATTCTTTGTATCATTATGTTGTAATAATAAATTTATTTCATTGAACTTGGGGGGTCACCCAAAAACTTCATTT | |||||||||
gi|11959496|gb|BE317618.2|BE317618 NF054C07LF1F1050 Developing leaf Medicago truncatula cDNA clone NF054C07LF 5', mRNA sequence ATGAAGTGTTTGGGGGAACTC EST sequence (targeted fragment marked with yellow): CTTCCATGGCTACCCTTTTGTCCAAAACCTCTTTCCCTTCTCACTCTCTCTTCAAAACGTTTGATACCCATTTTGCCCCTCCCATCAGAGTCAACGTAGCAATTGGCACAAAAGCCAGAACCAATCAGAGGCTTCGAGTTTCATCCGGTTTGATTGAACCGGATGGTGGAAAATTGGTGGAGCTTGTGGTGGAAGAATCAAAGAGAGATTTGAAAAAGGGCGAAGCTTTATCATTGCCAAGGATAAAGCTTTCAAAGATTGACGTTGAATGGGTTCATGTGCTGAGTGAAGGGTGGGCTACCCCACTTGGTGGTTTCATGAGAGAAAGAGAGTTCCTCCAAACGCTTCATTTCAATTCACTTAGACT | |||||||||
gi|57501146|gb|CX532427.1|CX532427 s13dNF61F10MJ079_271144 Methyl Jasmonate-Elicited Root Cell Suspension Culture Medicago trunc ATGAAGTGTTTGGGGGAACTC EST sequence (targeted fragment marked with yellow): GGCACGAGGACCACTACGCAAAAGTTTTTGTTTTTAGTTTTTTCAATTCAATTAATAATAAAGTTCACATTTTTGTGCGTTTGTGAATTACCCTTTTATCCTCCTTCATCCACTAGCAACAATACCTTTTTGTAGTTTTATATACCAAAACGAATTTCATTTTTCTTCAGCCACCAAAACCTTCAATGGCTTCCATGGCTACCCTTTTGTCCAAAACCTCTTTCCCTTCTCACTCTCTCTTCAAAACGTTTGATACCCATTTTGCCCCTCCCATCAGAGTCAACGTAGCAATTGGCACAAAAGCCAGAACCAATCAGAGGCTTCGAGTTTCATCCGGTTTGATTGAACCGGATGGTGGAAAATTGGTGGAGCTTGTGGTGGAAGAATCAAAGAGAGATTTGAAAAAGGGCGAAGCTTTATCATTGCCAAGGATAAAGCTTTCAAAGATTGACGTTGAATGGGTTCATGTGCTGAGTGAAGGGTGGGCTACCCCACTTGGTGGTTTCATGAGAGAAAGAGAGTTCCTCCAAACGCTTCATTTCAATTCACTTAGACTTAATGATGGGTCTTTTGTGAATATGTCTGTTCCTATTGTTTTGGCTATTGATGATGATCAGAAACATCGGATCGGTGAATCTACAAAAGTTGCTCTT | |||||||||
gi|20286614|gb|BQ149555.1|BQ149555 NF105G06FL1F1052 Developing flower Medicago truncatula cDNA clone NF105G06FL 5', mRNA sequenc ATGAAGTGTTTGGGGGAACTC EST sequence (targeted fragment marked with yellow): TTTTTTTTTTTTGAAAGTAACATATTGTTATTTTATGGAAAGAATCATCCCCCAAATATTCATTGTCTGCAAGGATTAATTGATGATAACAAAGCAAAAGGTTTGCTAGCTAGCAAACAAGACGGAGTCTGAAAAAACCCGAAAAAAGTCCCGGCCACACATTATTACCATGATTGTTGTAATATGTTGCAAACCTCAAACTGATGCTTCCACCAATTTCTCTTCTTTCTTGCCTCCTGAAAATAACTTGTATCCCCCATAGAAAGTCAGTCCCCAGCCAGTTAAAGAGACAATCACAAAGTGCTCTTCCTTCCATTTANAAGGACTCATTGGGTCTTTCCAGCAGGCAACTTTAGCGGAACCATGGTGATCTGCAGCTGCGGCGAGGCCACGGCGGTGGATGAGTTGAATGGGAGATTTGGAAGAGGGGGCAGTGATGCGAGTTAAAGATGCGGCTCCGCGTACGAGAGAGGCCATGATTTCTATCGAGCTTCAGAGAAATCCTCGTGCCGAATTCGGCACGAGGGANAGAGAGAGAGAGAGTTCCTCCAAACGCTTCATTTCAATTCACTTAGACTCAATGATGGGTCTTTTGTGAATATGTCTGTTCCTATTGGTTTGGCTATTGATGAT | |||||||||
gi|11934291|gb|AW691785.2|AW691785 NF044B05ST1F1000 Developing stem Medicago truncatula cDNA clone NF044B05ST 5', mRNA sequence ATGAAGTGTTTGGGGGAACTC EST sequence (targeted fragment marked with yellow): TTAATCAATCATACACATAAATTGATCCCAATGCAAATTGAATGATGTTAGTGGTATTTATTAACCGATCATAAAGTTATTGTACAATATTAAGTACTAGTGTGACAAGAGAGTTCACCCAAACACTTCAACTATGAGAGATCAAAGAGTCCTTCATATTGAAGATAGTACTAGTCAAATAGAAAGGTCTAAGTGGGTTTTGGATTCTCCTAATCCACCACCTTTATGGAAGACAGCTATTTTCTTCATTGAAAGAGACCCTTTTGCCTCATGGAAACAAATTATGTTTCTCATCCAAGAACAAAAGTTTTCTTGCACTTGCTTACTCATTCTTGCAGAGTTTGTTTCCAATCCTTGTTTGGTTAAAAGATTACACTATCTCTAAATTTAAAGATGATCTTTTAGCTGGTTTAACTCTTGCAAG | |||||||||
gi|11900474|gb|BF636316.1|BF636316 NF088C02DT1F1017 Drought Medicago truncatula cDNA clone NF088C02DT 5', mRNA sequence ATGAAGTGTTTGGGGGAACTC EST sequence (targeted fragment marked with yellow): CTTTCTGTCTAAGACCACTACGCAAAAGTTTTTGTTTTTAGTTTTTTCAATTCAATTAATAATAAAGTTCACATTTTTGTGCGTTTGTGAATTACCCTTTTATCCTCCTTCATCCACTAGCAACAATACCTTTTTGTAGTTTTATATACCAAAACGAATTTCATTTTTCTTCAGCCACCAAAACCTTCAATGGCTTCCATGGCTACCCTTTTGTCCAAAACCTCTTTCCCTTCTCACTCTCTCTTCAAAACGTTTGATACCCATTTTGCCCCTCCCATCAGAGTCAACGTAGCAATTGGCACAAAAGCCAGAACCAATCAGAGGCTTCGAGTTTCATCCGGTTTGATTGAACCGGATGGTGGAAAATTGGTGGAGCTTGTGGTGGAAGAATCAAAGAGAGATTTGAAAAAGGGCGAAGCTTTATCATTGCCAAGGATAAAGCTTTCAAAGATTGACGTTGAATGGGTTCATGTGCTGAGTGAAGGGTGGGCTACCCCACTTGGTGGTTTCATGANAGAAAGANAGTTCCTCCAAACGCTTCATTTCAATTCACTTANACTCAATGATGGGTCTTTTGTGAATATGTCTGTTCCTATTGGTTTGGCTNTTGATGATGATCANAAACATTNGATCGGTGAATCACAAAANTTGCTNTTT | |||||||||
gi|13782493|gb|BG647381.1|BG647381 EST509000 HOGA Medicago truncatula cDNA clone pHOGA-16P23 5' end, mRNA sequence ATGAAGTGTTTGGGGGAACTC EST sequence (targeted fragment marked with yellow): AATAGAACATAACTCGCCGATGATTTCAAAGAACTTTCCGCAAACAGTGGATGAATCAGGAACATCGAATTCCTCGATCGTCAATGCAGACGGTGACGAAGACTCGTGTTCCACGCGCGATTTCACTTTGAGTTTCGATATTCTGAAAACGGAAGGTTCAAATTCAAACAACGTCGTAACAAAGGAGTTTTTCCCTGTGAAGTTGCAAGCTACGTCGTCGTCATTTTCGATGAAGAACGGTTCGGTTGATTTTTCGATTAATCAAAACGAAGAGATGAAGATTGTTCAAGCGCCACAGCAAGTGAAGAAGAGTAGAAGAGGACCTAGGTCTCGTAGTTCGCAATACAGAGGTGTTACGTTTTATCGCAGGACTGGTAGATGGGAATCGCATATCTGGGATTGTGGGAAACAAGTTTATTTAGGTGGATTTGACACAGCTCATGCTGCTGCTAGAGCCTATGATCGAGCTGCTATTAAGTTTAGGGGAAGTTGGTGCTGACATAAATTTCAATTTGAATGATTACCGATGATGATCTTAAACAGACGAAGAATTTATCAAAAGAAGGAGTTCGTGCAAATACTTCGTCGACAAAGCAATGGTTTCTCAAGAGGGAGTTCGAAGTACAAAGGAGTAACACTGCACAAATGTGGGCCCGTTGGGAAGCTCGAATGGGACAATTCCTTGGGCAAAAGTATATATATCCTTGGGTTATTCG | |||||||||
gi|161110145|gb|EY478721.1|EY478721 METBH48TF JCVI-MT3 Medicago truncatula cDNA 5', mRNA sequence ATGAAGTGTTTGGGGGAACTC EST sequence (targeted fragment marked with yellow): GGGAGCCACCAAAACCTTCAATGGCTTCCATGGCTACCCTTTTGTCCAAAACCTCTTTCCCTTCTCACTCTCTCTTCAAAACGTTTGATACCCATTTTGCCCCTCCCATCAGAGTCAACGTAGCAATTGGCACAAAAGCCAGAACCAATCAGAGGCTTCGAGTTTCATCCGGTTTGACTGAACTGGATGGTGGAAAATTGGTGGAGCTTGTGGTGGAAGAATCAAAGAGAGATTTGAAAAAGGGCGAAGCTTTATCATTGCCAAGGATAAAGCTTTCAAAGATTGACGTTGAATGGGTTCATGTGCTGAGTGAAGGGTGGGCTACCCCACTTGGTGGTTTCATGAGAGAAAGAGAGTTCCTCCAAACGCTTCATTTCAATTCACTTAGACTCAATGATGGGTCTTTTGTGAATATGTCTGTTCCTATTGTTTTGGCCATTGATGATGATCAGAAACATCGGATCGGTGAATCTACAAAAGTTGCTCTTTTTGATTCAAAGGGTAACCCTGTTGCTATTCTGAAAGAGTAAGATACCCCTTTTCTTCTCTTGTTCATGTATAGTATACCTATAATGTTTTTGTGATTTTCTCTTATTAGTATGTTAATTTCATAACTTGTAGCATTCTTGTGAATTTATCTTATTGTTTTGTTAGTATATATGATGAAGCTCAT | |||||||||
gi|9667298|gb|AL367545.1|AL367545 MtBA15G01F1 MtBA Medicago truncatula cDNA clone MtBA15G01 T3, mRNA sequence ATGAAGTGTTTGGGGGAACTC EST sequence (targeted fragment marked with yellow): CCGGGGCAAAGTCGGTGGATGATATGTAATTCTTACTTTAATGAAATTGCTATAATATCTGGAAGAAATCAAGCATCCGTGAGCGTGGAATGGACGTTGAATAAAAATGAAGCAACTTATCATTGCCAAGGGATAAAAGCTTTCAAAGATTGACGTTGAATGGGTTCATGTGCTGAGTGAAGGGTGGGCCTACCCCAACTTGAGTGGGTTTCATAGAGAGAAAGAGAGTTCCTCCAAACGCTTCATTTCAATTCACTTAGACT | |||||||||
gi|13368441|gb|BG449659.1|BG449659 NF055E06IN1F1049 Insect herbivory Medicago truncatula cDNA clone NF055E06IN 5', mRNA sequence ATGAAGTGTTTGGGGGAACTC EST sequence (targeted fragment marked with yellow): GTCTTTCTGTCTAAGACCACTACGCAAAAGTTTTTGTTTTTAGTTTTTTCAATTCAATTAATAATAAAGTTCACATTTTTGTGCGTTTGTGAATTACCCTTTTATCCTCCTTCATCCACTAGCAACAATACCTTTTTGTAGTTTTATATACCAAAACGAATTTCATTTTTCTTCAGCCACCAAAACCTTCAATGGCTTCCATGGCTACCCTTTTGTCCAAAACCTCTTTCCCTTCTCACTCTCTCTTCAAAACGTTTGATACCCATTTTGCCCCTCCCATCAGAGTCAACGTAGCAATTGGCACAAAAGCCAGAACCAATCAGAGGCTTCGAGTTTCATCCGGTTTGATTGAACCGGATGGTGGAAAATTGGTGGAGCTTGTGGTGGAAGAATCAAAGAGAGATTTGAAAAAGGGCGAAGCTTTATCATTGCCAAGGATAAAGCTTTCAAAGATTGACGTTGAATGGGTTCATGTGCTGAGTGAAGGGTGGGCTACCCCACTTGGTGGTTTCATGAGAGAAAGAGAGTTCCTCCAAACGCTTCATTTCAATTCACTTAAACTCAATGATGGGTCTTTTGTGAATATGTCTGTTCCTATTGGTTTGGCTATTGATGATGATCAGAAACATCGGATCG | |||||||||
gi|55445609|gb|AJ846808.1|AJ846808 AJ846808 MtSN0 Medicago truncatula cDNA clone MtN010N13S6, mRNA sequence ATGAAGTGTTTGGGGGAACTC EST sequence (targeted fragment marked with yellow): CGCGGGGAGCCACCAAAACCTTCAATGGCTTCCATGGCTACCCTTTTGTCCAAACCTCTTTCCCTTCTCACTCTCTCTTCAAAACGTTTGATACCCATTTTGCCCCTCCTATCAGAGTCAACGTAGGAATTGGTACAAAAGCCAAAACCAATCACAGGCTTCGAGTTTCATCCGGATTGATTGAACCGGATGGTGGAAGATTGAGTGGAGCTTGTGGTGGAAGAATCAAAGAGAGATTTGAAAAAGGGCGAAGCTTTATCATTGCCAAGGATAAAGCTTTCAAAGATTGACGTTGAATGGGTTCATGTGCTGAGTGAAGGGAGGGCTACCCCACTTGGTGGTTTCATGAGAGAAAGAGAGTGCCTCCAAACGCTTCATTTCAATTCACTTAGACTCAATGATGGGTCTTTTGTGAATATGTCTGTTCCTATTGTTTTGGCTATTGATGATGATCAGAAACATCGTGATCGGTGAATCTACAAAAGTTGCTCTTTTTGATTCAAAGGGAAACCCTGTTGCTATTCTGAAAGATATCGAAATTTATAAGCACCCTAAAGAAGAAAGGATAGCTCGT | |||||||||
gi|20288497|gb|BQ151438.1|BQ151438 NF081G07LF1F1053 Developing leaf Medicago truncatula cDNA clone NF081G07LF 5', mRNA sequence ATGAAGTGTTTGGGGGAACTC EST sequence (targeted fragment marked with yellow): AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCCTCGTGCCAAATTCGGCACGAGGAATGGCTTCCATGGCTACCCTTTTGTCCAAAACCTCTTTCCCTTCTCACTCTCTCTTCAAAACGTTTGATACCCATTTTGCCCCTCCCATCAGAGTCAACGTAGCAATTGGCACAAAAGCCAGAACCAATCAGAGGCTTCGAGTTTCATCCGGTTTGATTGAACCGGATGGTGGAAAATTGGTGGAGCTTGTGGTGGAAGAATCAAAGAGAGATTTGAAAAAGGGCGAAGCTTTATCATTGCCAAGGATAAAGCTTTCAAAGATTGACGTTGAATGGGTTCATGTGCTGAGTGAAGGGTGGGCTACCCCACTTGGTGGTTTCATGAGAGAAAGAGAGTTCCTCCAAACGCTTCATTTCAATTCACTTANACTCAATGATGGGTCTTTTGTGAATATGTCTGTNCCTATTGTTTTGGCTATTGATGATGATCANAACATCGGATCGGTGAATCTACAAAGTTGCTCTTTTTGATTCAAAGGGTACCCTGTTGCTTTTCTGAAGATATC | |||||||||
gi|14869742|gb|BI266002.1|BI266002 NF081D03IN1F1030 Insect herbivory Medicago truncatula cDNA clone NF081D03IN 5', mRNA sequence ATGAAGTGTTTGGGGGAACTC EST sequence (targeted fragment marked with yellow): CAACAATACCTTTTTGTAGTTTTATATACCAAAACGAATTTCATTTTTCTTCAGCCACCAAAACCTTCAATGGCTTCCATGGCTACCCTTTTGTCCAAAACCTCTTTCCCTTCTCACTCTCTCTTCAAAACGTTTGATACCCATTTTGCCCCTCCCATCAGAGTCAACGTAGCAATTGGCACAAAAGCCAGAACCAATCAGAGGCTTCGAGTTTCATCCGGTTTGATTGAACCGGATGGTGGAAAATTGGTGGAGCTTGTGGTGGAAGAATCAAAGAGAGATTTGAAAAAGGGCGAAGCTTTATCATTGCCAAGGATAAAGCTTTCAAAGATTGACGTTGAATGGGTTCATGTGCTGAGTGAAGGGTGGGCTACCCCACTTGGTGGTTTCATGAGANAAAGAGAGTTCCTCCAAACGCTTCATTTNAATTCACTTANACTCAATGATGGGTCTTT | |||||||||
gi|151390846|gb|EV260724.1|EV260724 MTYEB05TF JCVI-MT1 Medicago truncatula cDNA 5', mRNA sequence ATGAAGTGTTTGGGGGAACTC EST sequence (targeted fragment marked with yellow): GAGAACATTCGGCAGGTGTTACACCCCTAAGTTAGGGTACGTCCTACAAACATTTTTAAGGTATCTCGACATCCTCGTCATCACCGTGAAACCTCAAACTAGGTTAGTTTCTCGTCGGTGGGTGATTCTGTCTGATTCCGTGCTTCAGGTAACAAGATAAGATGGCATTTTTCTTTGGATTTCACCGCTTGCTTCGTCACTCTCAATCCCCACTTGTTAGCTCCCATTTCACTTCCATTCGTCTCAATTCAACTCTCACTTCCCCCAAACTCTTCATTAGCGGTCTTTCAAGACTGACAACAGATGAAAAACTTACAGA | |||||||||
gi|57504051|gb|CX535332.1|CX535332 s13dNF39G08MJ068_388833 Methyl Jasmonate-Elicited Root Cell Suspension Culture Medicago trunc ATGAAGTGTTTGGGGGAACTC EST sequence (targeted fragment marked with yellow): GGCACGAGGCTTCATCCACTAGCAACAATACCTTTTTGTAGTTTTATATACCAAAACGAATTTCATTTTTCTTCAGCCACCAAAACCTTCAATGGCTTCCATGGCTACCCTTTTGTCCAAAACCTCTTTCCCTTCTCACTCTCTCTTCAAAACGTTTGATACCCATTTTGCCCCTCCCATCAGAGTCAACGTAGCAATTGGCACAAAAGCCAGAACCAATCAGAGGCTTCGAGTTTCATCCGGTTTGATTGAACCGGATGGTGGAAAATTGGTGGAGCTTGTGGTGGAAGAATCAAAGAGAGATTTGAAAAAGGGCGAAGCTTTATCATTGCCAAGGATAAAGCTTTCAAAGATTGACGTTGAATGGGTTCATGTGCTGAGTGAAGGGTGGGCTACCCCACTTGGTGGTTTCATGAGAGAAAGAGAGTTCCTCCAAACGCTTCATTTCCATTCAC | |||||||||