| mature miRNA: GAAGTAAAGAACCGGCTGCAG species: Medicago truncatula database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|89245601|gb|DY617388.1|DY617388 AC3317 NOLLY Medicago truncatula cDNA 5', mRNA sequence GAAGTAAAGAACCGGCTGCAG EST sequence (targeted fragment marked with yellow): GGTCGCCCTATTGCTGCTGCCGGTTCTTTACTGTGATAACATCTGATCTCTTCAGGGATTTGAATGACTGGTTGAAGTTAGTGCCACTGCCAGTGGGGTTGAGGGATAAACTGCCTGCTTTGGGCTTTTCTAATGTTTTTTGTATGCTACGCATGGGAGAGACTATTGAGGTGGGCTTTTCCTGGCAAAGTCCCAGCTTGAAGAGGCGGCAACAGGTTGCCGTATCTAATTCACAAAAGAAGAAACAGTAGTTGCAATGGGCGGTGCATGATAACTAGGTCAGACACGAGACATGCGGCCTTCAACTTGTGCACCAATTTGCAAGATATATGCGCATGAATTTTTGTTATGGATTTTCTTTCTAGGTCTTTTCCCATGATTGGTGGGTAAT | |||||||||
gi|260525028|gb|GT143097.1|GT143097 METCB56TR JCVI-MT3 Medicago truncatula cDNA 3', mRNA sequence GAAGTAAAGAACCGGCTGCAG EST sequence (targeted fragment marked with yellow): TGAAGTTGATCTGTCATGGCAGATCACTCTTCAAAGAGTGTGGGAAAATCTCATGCAAGGCAACAAAGGTAAAATTACTGACATTGTTTCTGAAGAACTAAAGATGATGTGGAAATGAGTGCCAGTAATTGTGAACACAGCGCCGTGTTTTCGTCATTGCCAGTAGCAATCAAATGGCTTAGGGACAGAAGTCAACAAAATCAGTCAGTTCGTTTTCAGGTCCTTGTAACTGGTTCTTTACATCTTGTTGGGGACGTTTTGAAATTAGTCAAGAAGTGATTCACTGCACAAATTATAAGCTTCCTTCAAGATGGCCTGTAACCTTCCATTCTAATTTCCAAACACAGCAAGTGTTGATGATATTCATGACTTTATTCCATGCCGTGAATTTTCTTTAGTACACACTTTGGTTCTTCTGAGAAGTTCCAACCCAGCCCATGGTCATCAACCCAACAACCCTGGTTCATCCTTAGGATGGTGACTTTCTATTAGAGAAAATTTTGTTGTATTTCAACTGTATGGTAACTATTGATGTTCAGTTTCAAGATGTTACAAGTTTCAAGATGTTCGGATTGTATATTCTGATTTTATTGTGTGAATGCACATAGTTGGGGCCACCTTTTTTGATTCTAAAGGAGCTGTCCTATGAATTAATGCAATCTTGATATAGTAGATTCCATTGGAATTTTAATTACTGCATATTGAAATTACTGTTATTTGAATCAAATGGAAGATTTCATTCAAATTCAAAAAAAAAAAAAAAAA | |||||||||
gi|20286494|gb|BQ149435.1|BQ149435 NF090D11FL1F1094 Developing flower Medicago truncatula cDNA clone NF090D11FL 5', mRNA sequenc GAAGTAAAGAACCGGCTGCAG EST sequence (targeted fragment marked with yellow): GCACGAGGTTTCTTCAGTAGTTAACTGCAACCGGTTCCTTACTTCGGTAGTTAACTGCCGCAGGAACATTTTCATCTTTTACATGTATTTTTCAACCCTATCATATGCGTCAACAGCAATTTTCTAGCTTGATGGAGTGAATTGGTAACATAAAGTTGTATGCATGTAATAAATTCACCCTTTCAATATTTACAGACATTACCTTAAAAAAAAAAAAAAAAAAACTCGA | |||||||||
gi|20176112|gb|BQ124150.1|BQ124150 EST609726 GLSD Medicago truncatula cDNA clone pGLSD-34O2, mRNA sequence GAAGTAAAGAACCGGCTGCAG EST sequence (targeted fragment marked with yellow): ACTAACAATTATGAATTATCATTGCTCTATAGCCCAACCTAAATGCATTACATCTGAAAAATTCTCATTGCCCATATTACAATAGAAGTTTGGAGCAAGAAAAAAGTGAATTGCTTCTATTTATTAACTACTACAAGTAAATGCTACATCTACAAAACTTGGGATTTTTTAAAAACTAGATTTTGACTAACCTACAATGACTAAAACTTTAAAAGAAACTATACATGCAATTATTCAACAAGTTTCAATCAATTAGCTTGAGAAGAGCCTATGGACTTTCATCTTCAACTCCAATGTCATCGTCATTGTCCTCATCAGAACTGCAAGTGTTTCCCATGAAATTGATTTGAGATTGCTGAAAATTTTTGATAGCATCTCTAGCTTCAGAAAGCAATGCAACTTTTGCTGCTTTAACAACATCTGTTTTCTGAATGCCTTTTCCTTCTCCACCTACAGATTTTTTTGCCCGTGTAGATGCTGCTCTTCTCCTAAGGTCCCTAAATCTTAATTGATTCACATATTTTTCATGCTGCACCTTGTTCTTTACTTGCTTTAGCACAGGTGGACTAGCAAGATCTTTAACATCTGATGAGCCGCTAAATCTAGAAAGAGACTTCTTATGCTTATGAATTGAAGATGATTGTAGGAACCCTTGATTTTCCTTT | |||||||||
gi|20308208|gb|BQ165619.1|BQ165619 EST611488 KVKC Medicago truncatula cDNA clone pKVKC-10E7, mRNA sequence GAAGTAAAGAACCGGCTGCAG EST sequence (targeted fragment marked with yellow): CCTTTATTCGTCGGCAGTTAATTTTTGAAGGAACTTCTGTAGTTAATTGCAGCCGATTCTTTACTTCGGTAGTAAATTGCTGCATGGGCATTTTCGTTTTTTACATATGTTTTTCAGCTCTATCATATGTGTCAAGAGCAGTTTTCATCAAGCTATACTTCTCAATGAAAGCTACGATTTTGTCTTATCGTTTAGCTTGACACACAAGAGAAATAGACGTTTTGACACTTCTAGGAGCTGCTGCAGCAAAAGACCTGTCCAATGAAATGTTTTAAGTTAACACAATGTCATTGCAATTTATCTGACATGGTTTTCTACAATATATCAGAAGTATTTTTCAAACAATGAATTTTATTTATTTGAAGGATTAAATTAATTATTTTGTTTTATAAAATAAAGGTTTAATTTCACTTTTGAGCTCAATATTTTTTTTAGCAATTGAGTCCTGATATTTTTTTCTCCAAAGTGGCTGAATCACTTTTGACCTCAATGTAAAAGTTGGAAAAATAAAATTAAAATGGGGAGGGACACTACCGAATCATAAAGGGGAAACAAAAGGAGCCAAAATCAGTCAAAAAAGTAGTAGGGATCAAAATTGCACAATCACTAAACTTTAAGGGTCAAAAGAGAAATTAAACCAAAAATAAATAAATATTGAATTTAAAATTAGAAAGTGG | |||||||||
gi|7559686|gb|AW684950.1|AW684950 NF023D12NR1F1000 Nodulated root Medicago truncatula cDNA clone NF023D12NR 5', mRNA sequence GAAGTAAAGAACCGGCTGCAG EST sequence (targeted fragment marked with yellow): CTTCAGTTGATTCTTTATTTCTCTATTGATATCATCATGTGGCGCTACTTCTCCAAATTCATTCATTCGCCAATTTCTCGCTTCAACCCATCAAAATCAAATTCCATTCCGGTTAATTTTGAGATGGGATCTTACTGTGCTACCAGAATTTGTAATCTACAAACTTTATTCAAAGGAAAATCCAGCGGTTATTCTACAGTAACATCATGTGATTCATTCTCTGAGGAAAAGCCAAAAGACAATTCTGTATCTGATATGTTGGTAGATTCATTTGGAAGGCTTCATACTTATTTGAGAATATCACTAACAGAGAGGTGTAATTTAAGGTGTCAGTATTGTATGCCAGCAGAGGGTGTGGAGCTTACTCCTACTCCTAAGGTTTTGACAAAAATCGAGATTCTCAGATTGGCTGATCTCTTTGTGAGCTCCGGGGTTAATAAAATACGGTTGACTGGTGGAGAACCGACTGTTAGGAAGGATATTGAAGATATATGTTATGAATTGACGAGTTTAAAGGGATTGAAGACACTTTCCATGACTACTAATGGTATTGGCCTGGNCTAGAAAACTTTCCNAAGCTAAAAGAATGTGGACTTGATTCTT | |||||||||