| mature miRNA: TGACAGAAGAGAGTGAGCAC species: Medicago truncatula database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|7643128|gb|AW736345.1|AW736345 EST332264 KV3 Medicago truncatula cDNA clone pKV3-12C4, mRNA sequence TGACAGAAGAGAGTGAGCAC EST sequence (targeted fragment marked with yellow): GAACTACTTTCTTCTTTGGATGGTTGAGGGCATGAATGGTGACCGAGTAAAATCACATTCAACTTGCTGTGGGGATAATCAACAACAGTGTGCAAGCAAAGGTAATTTAACCTTAGGAGGGCAAGTAAACCATGGAAATCTTCAGGGGGGGCAAGTCCACCCTCCAGATACATCGAACTCCAGTCAGCCTCGGGCTAATACCCGCAATCACCTCGATATGGAAAGGGTGCATATATCTCTTCGAAAGTCATTGATTTTCTTTGTCCAGTTGACAGCTAAGTTCCCGTTGATCATTATATTTCTTTTGATTATCTTGTATGCAGTACCAGCCAGTGCAGCCATTTTGGCTCTGTATATACTTGTTACAATTCTCTTTGCTCTCCCGTCATTTCTCATCTTGTACTTCTCATATCCAAGTTTAGACTGGCTTGTCAGGGAAATAATTGCCTGACATCATAAGCTAGTTTAAGCTTTTGTTCCATGATTTGCCGGCTTTCCCTTTAGTCCATTACAAGCTGTGTTAGTTCTCTTCTGGCATACAGCACTGCTCAATTTAATACAGTAGTA | |||||||||
gi|14869479|gb|BI265857.1|BI265857 NF111A02IN1F1017 Insect herbivory Medicago truncatula cDNA clone NF111A02IN 5', mRNA sequence TGACAGAAGAGAGTGAGCAC EST sequence (targeted fragment marked with yellow): AGTAGCCATAGCAAGTGAGACAAGTACTATAAACTACACTTTCACTTTTTGTAGTTTTAAGATTTTGTCCTGTTTTTGCAATGGGTTCTCGTCAAATTCAACAAGAACAACCATGGCTGTTGGAGAATGGTAATCCAAAGGTCTTGACCAAGGAAGCNTAGACATGGACATGGCCCGGAGCCGGACCGCGCATGGCATGTCTTCTTCTTCCTTGCGCAAGAAATCTGATCACTCTCTTGTGTCAAGGATTCGATGTGCTTCGCTCCGGAACGTTTTGGTTAACATCCAAGAGGTTATTCTTGGTACCAAGCTGTCCATTCTCTTCCCTGCCAT | |||||||||
gi|13379193|gb|BG455868.1|BG455868 NF068F05PL1F1045 Phosphate starved leaf Medicago truncatula cDNA clone NF068F05PL 5', mRNA se TGACAGAAGAGAGTGAGCAC EST sequence (targeted fragment marked with yellow): TCTTCCCCTTGACTTCACCATAGCCTTCTCCTAAATCATTAATAATCTCTTATATTTCATTCTTTACCTTAACTTATGGATGGAAGTTGGGGTGAAGGAAAGAGAATCTATGAGTACAGAGAAGAAAATGAGTATGAAGTAGAAGTAGAAATAGAAGAAGAGGAAGATGTGAGTTATGGAGATGATGAGAAAAGGAAAAGGGTGGTGACTGATCATCTTTACAACAAGAAAGGGTCAAAAGCTGGAGGATCAGTGACACCTTCTTGCCAAGTTGATAACTGTAATGCTGATCTAAGTGCTGCTAAGCAGTACCATAAGCGCCATAAGGTTTGTGAAAACCATTCTAAGGCTCATTCCGTACTCATTTCAGAGCTTCAACAAAGGTTTTGCCAGCAATGTAGCAGGTTTCATGAGGTATCAGAATTTGATGACTTAAAAAGGAGTTGTAGAAGGCGTTTAGCTGGACATAACGAGAGGCGTCGCAAAAGTGCATCCGAATATCACTGAGAAGGAATTCATTGATGATGATCAAACATATTGAGCAGCATATATAGTTGAAATAAAGACACCATCCTTGAGTTCTTCATATTCAAATTGATGTTATTTGTGGAAGCTCTCTCTCTTCTGTCATCAAACTTTATCTCCCTCTTTATGCT | |||||||||
gi|20273263|gb|BQ137137.1|BQ137137 NF067H03STT1F103 Developing stem Medicago truncatula cDNA clone NF067H03ST 5', mRNA sequence TGACAGAAGAGAGTGAGCAC EST sequence (targeted fragment marked with yellow): CTGATACGCCAAGCTCGAAATTAACCCTCACTAAAGGGAACAAAAGCTGGAGCTCCACCGCGGTGGCGGCCGCTCTAGAACTAGTGGATCCCCCGGGCTGCAGGAATTCGGCACGAGGTTCTCGCTCTCTTCTCTCCACACACACATTTGCATCTTCCTTTCTCTCTAGAATCTTCCATCGCCAATGGCTACCGCTACCGAAACCAATCTCGCCAATCTCAAATCCGCTGTTACTGGATTGGATCAAATCAGCGAGAATGAGAAAACCGGGATTCAATCCAAACCCTCGGTTTTCTCGTTTAACCCCTTCCAAAATTGGGGGGGAGAAGAAGAGGAAAAAAAAAAAAAAAAGAGGGGGGAGGGGGGGGAGAAGAGGAGGGGGGGAGAAGGGGAGGAGGAAAAGGGAGAAAAAAAAAAAGAAAAGAGAGAAAAAAAGAAGGTATGGTAGAGGGTAAATATATGGGAGGATAAAGTATAGATATGAGTGGTATAGAAGTGGGTGATTAGGATGAGTGAGGAGGAAAGAGGAGGAGGAGAATATATAGAATGTGATAAGTAGATAAGAGATAGAGAGTAGATGATGAGAAAAAATAAAGAGTAGGAGATAATGCAGTGGGGGGGGGGGGGGTATAAAAAAAAAAAAAACACCCCCCCCCCCGGGGTGGAGACAGAGACTCGTTGTGGTGTGGCGCGAGCGGCGTGTTCGCCCCCCCCCCCCCCCCCCCCCACACTATCTAGTGAGGAAAAAAAAAAAAATGTGTTTGTGGTGGGGGCCCCCCCCTAAAAAAAAAAAAAATCTATGGGGGGGGGCACACACAAAACACATATCTCTCTGCTGCGGGGGTGT | |||||||||
gi|9670438|gb|AL370685.1|AL370685 MtBA39C10R1 MtBA Medicago truncatula cDNA clone MtBA39C10 T7, mRNA sequence TGACAGAAGAGAGTGAGCAC EST sequence (targeted fragment marked with yellow): CCCCTTTAGTCCATTACAAGCTGTGTTAGTTCTCTTCTGGCATACAGCACTGCTCAATTTAATACAGTAGTATAATCGACTCGGACTTGATTTCAGCTATGGTAAAGCTTGGTTGGTTGGTACTGGTAGGTACAGAATCAGTGCCATTAATAGTGTTGATGTAAACCAAGACTGTGGACTAGCGCCATGATTATGCCCATGCCGTTTTTCTGGAGGCAATTATTTGTCTGGTTTAATTCCAGTTTTACTTGGGGGAGAATCGATCCCGATACTTGGGGACTACATTTATCAATGTCATGTTTTGTATGGTATGGGTATTTCTTTTAATACAGCTTATAGTTATATGTTTGTATCTTTAGAAAAAAGAGTTATATGTTTGTAAATTGTATATAACAATTGTGTTGTTTGTGTGTAGCCTATTTTGAAGTACTTTCTGCTTAATTTTAAAAAAAAAAAAAAAAAA | |||||||||
gi|161107459|gb|EY476205.1|EY476205 METAO74TF JCVI-MT3 Medicago truncatula cDNA 5', mRNA sequence TGACAGAAGAGAGTGAGCAC EST sequence (targeted fragment marked with yellow): GGGGGCTTGGGTGCCCAGTATGCTGGGAATCTTTCAATATTGTTGAAAATGTGCCTTATGTTTTGTGGTGTGGTCATACACTCTGTAAAAACTGTATCTTGGGACTACAATGGGCTACCGTGAAATTTCCAACGCTGCCGGTTCAACTTCCACTTTTCATCTCCTGCCCTTGGTGCAACCTTCTATCATTTCGTTTAGTATATCGAGGAAATCTTAGATTCCCTCGTAAGAACTACTCTCTTCTTTGGATGGTTGAGGGCATGAATGGTGACCGAGTAAAATCACATTCAACTTGCTGTGGGGATAATCAACAACAGTGTGCAAGCAAAGGTAATTTAACCTTAGGAGGGCAAGTAAACCATGGAAATCTTCAGGGGGGGCAAGTCCACCCTCCAGATACATCGAACTCCAGTCAGCCTCGGGCTAATACCCGCAATCACCTCGATATGGAAAGGGTGCATATATCTCTTCGAAAGTCATTGATTTTCTTTGTCCAGTTGACAGCTAAGTTCCCGTTGATCATTATATTTCTTTTGATTATCTTGTATGCAGTACCAGCCAGTGCAGCCATTTTGGCTCTGTATATACTTGTTACAATTCTCTTTGCTCTCCCGTCATTTCTCATCTTGTACTTCTCATATCCAAGTTTAGACTGGCTTGTCAGGGAAATAATTGCCTGACATCATAAGCTAGTTTAAGCTTTTGTTCCATGATTTGCCGGCTTCCCCTTTAGTCCATTACAAGCTGTGTTAGTTCTCTTCTGGCATACAGCACTGCTCAATTTAATACAGTAGTATAATCGACTCGGACTTGATTTCAGCTATGGTA | |||||||||
gi|11933279|gb|AW694750.2|AW694750 NF079G06ST1F1051 Developing stem Medicago truncatula cDNA clone NF079G06ST 5', mRNA sequence TGACAGAAGAGAGTGAGCAC EST sequence (targeted fragment marked with yellow): CTTTCCTGTTTTTTCCAACTAAATTTACACTTTTTATCCTTCTCTTTCTACACACTCTTTTCTGTCAGAAAAATACTGCAGTTTTGAATAAACTTCTCAATTCCCATAATCCAATATGGAATTTTAGTAAGTTCCCAACTTTATAAATTTTCTCTACCAATCACTTCATTTTCCCACTTTCTAGTTTCTACTCTTTGTCATTGCTTCTTCACCTCTCTCAAGTCTCAACTCTTATAACCAAAGGAGGCAAAAAAATAAAAATAAAAAGTTTGCAACTTTCTGACACCATCTTTATAGCATTAATTGCTAGTGTCTTAAAAATGCTTGTTTTGTATTGGCTACACCTAAAGTTCCAAACTTTAAGCTACCTCAAAAAAACCCACTTTACATTTCAAGTTCCATTATGATTAGATTCACCAAAAAAGACTTTGTTTTACACAACTATTTTCAT | |||||||||
gi|83665525|gb|DW015933.1|DW015933 EST1224894 MTY Medicago truncatula cDNA clone MTYAB36, mRNA sequence TGACAGAAGAGAGTGAGCAC EST sequence (targeted fragment marked with yellow): CGGCCGGGGAAGGTTGTTGTGGTCTTCCCCTTGACTTCACCATAGCCTTCTCCTAAATCATTAATAATCTCTTATATTTCATTCTTTACCTTAACTTATGGATGGAAGTTGGGGTGAAGGAAAGAGAATCTATGAGTACAGAGAAGAAAATGAGTATGAAGTAGAAGTAGAAATAGAAGAAGAGGAAGATGTGAGTTATGGAGATGATGAGAAAAGGAAAAGGGTGGTGACTGATCATCTTTACAACAAGAAAGGGTCAAAAGCTGGAGGATCAGTGACACCTTCTTGCCAAGTTGATAACTGTAATGCTGATCTAAGTGCTGCTAAGCAGTACCATAAGCGCCATAAGGTTTGTGAAAACCATTCTAAGGCTCATTCCGTACTCATTTCAGAGCTTCAACAAAGGTTTTGCCAGCAATGTAGCAGGTTTCATGAGGTATCAGAATTTGATGACTTAAAAAGGAGTTGTAGAAGGCGTTTAGCTGGACATAACGAGAGGCGTCGCAAAAGTGCATCCGAATATCACTGAGAAGGAATTCATTGATGATGATCAAACATATTGAGCAGCATATATAGTTGAAATAAAGACACCATCCTTGAGTTCTTCATATTCAAATTGATGTTATTCGTGGAAGCTCTCTCTCTTCTGTCATCAAACTTTATCTCCCTCTTTATGCTAAGTTTGCTGCTCCATTAGATCGAGTATAATTTTAGCTGAAAACTAAAAATAACTTGCTTGA | |||||||||
gi|11936271|gb|AW696432.2|AW696432 NF106B03ST1F1027 Developing stem Medicago truncatula cDNA clone NF106B03ST 5', mRNA sequence TGACAGAAGAGAGTGAGCAC EST sequence (targeted fragment marked with yellow): CATAAGCTTTTGAGTATTCATTCTCTTCTGCCATCATCATCGTGCACTGCATTTTCTCTCTTTCAAGATGAGCGCGGTTGAGTTGACGGAGACTTACGCCTGTACGCCGTCAACAGAACGTGGCCGTGGTATTCTCATCTCCGGCGACTCCAAATCCAACACCATCACCTACACCAATGCCAGATCGGTTATCATGATGAATCTCCATAACCCCCTTCAAGTCTCCGTCTATGGCGAACATGCTTACCCTGCCACCGTCGCTCGATTTTCACCCAACGGTGAATGGGTTGCATCTGCTGACGTGTCAGGTACCGTGAGGATCTGGGGAACTCGCAATGAATTCGTTTTGAAGAAGGAGTTTCGTGTTCTTTCTGGAAGGATCGATGATCTTCAGTGGTCTCCTGATGGTATCAGAATTGTTGCTTCCTGGTGAAGCTAAAGGGAACTCCTTTGTTCGCGCTTTT | |||||||||
gi|11935691|gb|BE325157.2|BE325157 NF114A11ST1F1084 Developing stem Medicago truncatula cDNA clone NF114A11ST 5', mRNA sequence TGACAGAAGAGAGTGAGCAC EST sequence (targeted fragment marked with yellow): CGTTGATTGAAAAAGCATAAGCTTTTGAGTATTCATTCTCTTCTGCCATCATCATCGTGCACTGCATTTTCTCTCTTTCAAGATGAGCGCGGTTGAGTTGACGGAGACTTACGCCTGTACGCCGTCAACAGAACGTGGCCGTGGTATTCTCATCTCCGGCGACTCCAAATCCAACACCATCACCTACACCAATGCCAGATCGGTTATCATGATGAATCTCCATAACCCCCTTCAAGTCTCCGTCTATGGCGAACATGCTTACCCTGCCACCGTCGCTCGATTTTCACCCAACGGTGAATGGGTTGCATCTGCTGACGTGTCAGGTACCGTGAGGATCTGGGGAACTCGCAATGAATTCGTTTTGAAGAAGGAGTTTCGTGTTCTTTCTGGAAG | |||||||||
gi|55443871|gb|AJ845897.1|AJ845897 AJ845897 MtSNF Medicago truncatula cDNA clone MtNF13B23N1, mRNA sequence TGACAGAAGAGAGTGAGCAC EST sequence (targeted fragment marked with yellow): TTATTTAGTTGGCACGGCTTTTGAACACGTCAAGACCCATTTCAGTAGGATCAGTTGCCTGCAACTCTATTTGAATTCCATCCAGCTCCCTCTTGAACCTTTCTTTGGTGCTTGCATAAATCATCTTGCTTCTCACCCTTGCTGTATCAGGCGACCAGCCAATGAAAAAAATTCTGCTTTTGGGGACATTCTCTTCTGTCAGATACTCAAAATCATAAACAGCATAACGACACTCATCAGCAGGAAGGCATGCAGTGAAATCTTCATAGCCTTGGGCTGGCTCACCAAGCTTTTCCACAATGACTTGCTTCTGTTTCTCCTCGATCTTATACACTATGAACCGGTGTGTCCTTTTTGCCTTGAGTTCCATAAACTTTAACTTGCAGTCATCATGGACTGCCATACCAGATGCTGCATTTGCCATGGGTTAGTTGTGGTTGTTGGAGAATTGATTGGGAGCGAAGGTTGTGGAGAAGATATAGGAGAAAGGTGTGATGGTTTCTTCGATCGGAGAGAGAGAAAGAGAACGAGAAATGTGAAGGAAAAAGGTCCCCGCGT | |||||||||
gi|161107743|gb|EY476474.1|EY476474 METAR79TF JCVI-MT3 Medicago truncatula cDNA 5', mRNA sequence TGACAGAAGAGAGTGAGCAC EST sequence (targeted fragment marked with yellow): GGATACCATGCCATTGTTACCTCATTAATGCATTTTCAACTTTATTTCACGTTCCAGTTTTTTTTGTCACATTCTCTGCCATTTTTGTTCCTTCAACTCCTTCTTTTTACCTATTCGCCGCCCCTATTTTCTCTTTCTTGTTCCCTTCATTTCAATAATAGAACTGCATAGAGAAATCAATATTTGATAGAGATTTGTCGCTAAAACAAGTTTGACAATCAACTCTTCATTTCTCTTTTTAGGTTTTTTTTCACTCACCTTAGCCCCGTGATTTTTTACCTCACTTTTTTCTTTTCTTTTACAAAATCGACGGTTATTCTTTGTTTTCATTTTCACTAATATCACATGATGTGATGTGTGATATATATATTATGACACATCTTTTTCTCTTCTTCTGCAGATTTCTTATTATCTCTTCTTCTTCAACGCTCTTCCTTTCATGCTACTCTAAGAACCTTCACATGGAACCGCAACGTGTTGTCGTCATTGTCACCGTCATCACCTTCTTCTTACTCTCTTCTCTCAGTCTTCTTGCTGGATTGGGATTTGGTGGTGGTGGTGGGGCTCGTACTGGAACGTTGATGTCTTTGTCGTATTTGTTGGGGTTTGAGGAAGAAGGTATCGACAACAACAACAACAACTACACACTCATTCATACACCTCATCGTAAACTTCTTCCTCATTCTGCAACTGAGAGGTTGGAACCAAACCGAATATGGGGGGACA | |||||||||