| mature miRNA: TGAGGCATATTTGTAGGGACC species: Medicago truncatula database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|148765288|gb|ES611982.1|ES611982 MTGland_A014_2007-05-10/MTGlandA014_D12_045_1 Medicago truncatula A17 glandular trichome Med TGAGGCATATTTGTAGGGACC EST sequence (targeted fragment marked with yellow): TATATATTTGTGATATGATAATTGATTAAAAGCTAAAANAAAGTTTTGGTCCCTGCNAATATGTCTCGTTTTGATTTTANTCCCTGTAATTATTTTTGCAGTGACCATTTTAAAAATCAAAAGATTTTGCAATGACTATTTTTTTAATAAATGGGTTCAGTCATCATGTGCCTTATCATGTGCCACGTGTGCNAATCATCNCAAAAATGAAGTCAGGGACCAAAACCAAAATGAGGCATATTTGTAGGGACCNAAACCATAGTTTACCTTGATTAAACTATTTTATTGAAAGGAAATGGGTGTAAACTTTCTTATAGTATGTGACTTTGGTGTATCTTATTTCTTTTTGATNGAGAAGTTTTGGTATTATCTATTTTATGACNTTATTTCTCGTGTTTTAAGTATGAACCAATTTGGATAAGGAAATTTANCTTACATTGATATATGTTTGTANGTACCNAGAAATGAAATATGAAGTTGTTGTGTAATAGAAGCGTATAAGGGGACAAAAATTGTGTATTATTANATTGTACTCCATCCGTTTCNAAATAANTGTCGCTTTAGCAAAAAAAAATTGTTTCAAAATGAATGTCACTTTACNTTTCCAATACAACTTTAATTTTTTTTCNTCCNACTTTACCCTCNATAAATACTCCNACTTTTTTCTCACACAATTTTCCATG | |||||||||
gi|157980777|gb|EX529049.1|EX529049 MTGland_A049-_2007-05-31/MTGlandA049-_D09_037_1 Medicago truncatula A17 glandular trichome M TGAGGCATATTTGTAGGGACC EST sequence (targeted fragment marked with yellow): TTACGGCCGGGCACTACNGTAGTGTTTTTTTTACTACAGTCAAACTTTTTTCTGAATAAACCATCAGTTTAGACCCTAAAGTATCACTCTTTCTTCAATTTAGTCCCTAACCTGTAAATATAATAAGTAGTCATTAAACTATATAGGCTAAAATANGGTTTTAGTCCCTGCAAATATGTCTCGTTTTGGTTTTAGTCCCTGTAAAAAATAAAATTTGTTTTTGATCCCTGCAAAATTTTTTGTTTTTGAAAATAGTCTCTTACCCCACTTTTGTGATAATTTATATACGTGACACAATATAACTGAACCAATTTTGTAGTTTTTGGTCCCTGCAAAATTTTTTGTTTTTGAAAATAGTCCAAAAAACGAAAAAATTTGCAAGGACCAAAAACAATTTTTTTTTTTTACAAGGACTAGAACCAAAACGAGATATATTTGCAGGGATTAAAACCATATTTTAGCCAACTATATAAAACTTGTCAATCTAGTGCAAGTTAAAACATAAGATACTACCTCGTTTTAATGTGTAATTTGATTTGATTAGTTTTCGTTTATGATTCATTCTGATGAAGTATAAATTAATAAAGTTCATCCAGAAATCNTAACTCAACTGACAAAGTACCGAAATTGTTAGGCCGGATACCATGATCGGGGTTCGAACCCCGGTACCTCCACTTGTATTTTGTGTGTGAGTTTATAATGGCTTTGCCATTTCG | |||||||||
gi|157982316|gb|EX530588.1|EX530588 MTGland_A068_2007-06-27/MTGlandA068_H12_041_1 Medicago truncatula A17 glandular trichome Med TGAGGCATATTTGTAGGGACC EST sequence (targeted fragment marked with yellow): ACGGCCGGGCTACTTGATCGGATTGCTCCGAAACTTTCCCAGAAAATCAGAAAAAATTCAAGGACCATCACTCCCATAGAATCAATTTCTTACGGGACTCCGCCCCTCAGAATCCAAAATTCCATCGTTTAGACCCATTTTTCATATTCTTAGAAAAATCTGAAAAAATTTGCATTAGTTTTATTTGATTTTTAAAAAAAAATTTGTGCTATTTTTATATTTTTATGATTTTATTTGACAGGTTTTTAGCATTTTTTACTTCGTTTTTTTTTTGTTATTTTTAAAAGCAAAACTCAAAACTGCTGAAATGTGAGAGTCTGATGGCTGATTATACATAAGAATTGTCCGAATTATAAAATCCGAAATAGTAAACATGAATCCGGATTTTAAAATCCGGAATGCACATGGGCATTTTTGAAAATTTTACAGGGCGCGGGAGAAGGCCATAGGTTGGGAAAAGTAATAGTCTAAAATTAATGTATGTCACACCACTTTAAGTTGAACACATTTCTAAAGTGTAAGACCCACCTTGATTTAAACCAATAAAAAAAAGTGAGTATTTGAAAGTGTTGAAAAGAAAGTAGGCTAAAATATGGTTTTGGTCCTTGCAAATATGTTTCGTTTTGGTTTTAGTCCCTGAAATTTTTTTGTTTTAGTTTTTGGTCCCTGCAAATATGCTACGTTTTGGTTTTGGTTATTCGTCCCACTTTTGTTATGATTTGCACACATGACACATGATGACTGTCACTCATTTATTAGAAAAATAGTCCCTGTAAAATCTTATGANTTTTAAAANGNNCCCTACAAAATATTTTACTTTTGAAAATAGTCTCTGAAGGGACTATTTTTTTTGCNGGGACCAAAAATAAAAAATTTATTTTACNGAAATAAACTAAAATGAGGCATATTTGCTGGGNTCAAANANNNTTAGTCANAAANNNTTGCTANCCNGCNCNCTGNNGCNCNANTNATCTGTTNNTTTTTNG | |||||||||
gi|157980702|gb|EX528974.1|EX528974 MTGland_A048_2007-07-07/MTGlandA048_E02_004_1 Medicago truncatula A17 glandular trichome Med TGAGGCATATTTGTAGGGACC EST sequence (targeted fragment marked with yellow): ACGGCCGGGGTNNAGTTGAAATTAAGGCTAGAATATGGTTTTGGTCCATGCAAATATGTCTTGTTTTGGTTTTGGTCCCTGTAATATTTTTTTGTTGTTTTTGGTCCCTGCAAATATGCGTGGTTTTGGTCCCTGGCTCCACTTTTGTGATGATTTGAACACGTGGCACGTGATGACTAAACCTATTTATTAGAAAAATAGTCCCTGCAAAATCTTTTGATTTTTAAAAAGGTCCCTGCAAAATAATTTACTTTTGAAAATTTTTTGCAAGGACCAAAAACAACATTTTTTTTTTTTTACAAAGACTAAAACCAAAACGATGCACATTTGCAGGGATCAAAACTATATTTTAGCCCGAAATTAATTAACACAACNTAAGTGATTTAAGTTAGTTGAAAAAGTAACATAATGTTAAGACATGCACTCCTCGTATGTCCCCGTTTTTACAGGGCAAAATTATGTAAAATATGAATACTATTTTGTATGACATTTTGATTTTGTTCAATATTAAGGGTATATATGTTTGTGACTTTTAAATTATAATAAATCATGTTTATTTGTCCTCGTGAGCTTAGCTCAGTTGATATGGACAATATATATTATATGCAAAGTTTAAGGTTCAAATCCCGATCACCACAAAAAAAAAAACAATCATGTTTATCTTTTTCAATGACTTCATTAATATAGAAAATAATTTAACACAAATTCATATATTTTTCAGTTTGGGCCCAATAAAACTTAGTATTGGGTCAATTACTTACTTCACATTGCCTCTCCGCGAGGAGGANACTCGTAGCAACACGGGGCAATGATTCAAACACAAAATCATAACGGCCCCCATGGTTGCCACATTATAACGCTCGACGGTTACNATTCATGGAATCATAAAAGCCGAGCAACGACTCTTTNCATTAACNNTGACTTATGCNNCTCTTTTNTATANNNGGNNCTTNNCNAGTCCTCNAATGCATGATTTTTANNATCNTNNNCCCNNT | |||||||||
gi|7771174|gb|AW127201.2|AW127201 M110141 GVN Medicago truncatula cDNA clone N165, mRNA sequence TGAGGCATATTTGTAGGGACC EST sequence (targeted fragment marked with yellow): GCACGAGGAAAAAAAAGTATGGCTAAAATGCTCAAGTTTTTCTTTGCTATAATTTTACTTCTCTCATTGTTTCTTGTTGCAACGGAAGTTGGTGGTGTCCCTGCAAATATGCCTCGTTTTGATTTTAGTCCCTGGTAAAAAAAAAATTTGTTTTTGGTTCCTGTAAAATTTTTTGTTTTTGAAAATAGTCCCTGACCCCACTTTTGTGATGATTTGCATACGTGACACATTATAACTGAACCAATTTTGTAGTTTTTGGTCCCTGCAAAATATTTTGTTTTTAAAAAAGGTCCTTGCAAAATTTTTTGTTTTTGAAAATAGTCCCTGAAGCAGGGACCAAAAACAATTATTTTTTTACCAGGAACTAAAACCAAAACGAGGCATATTTGCAGGAACTAAAACCATATTTTAGCCTTATATTTTTCATCACAGCATATATTGAAT | |||||||||
gi|148765662|gb|ES612356.1|ES612356 MTGland_A019_2007-05-07/MTGlandA019_C01_006_1 Medicago truncatula A17 glandular trichome Med TGAGGCATATTTGTAGGGACC EST sequence (targeted fragment marked with yellow): TNNCGGCCGGGCNNTTCCGAATAAGTCTCAATTTTTTTTCTCCAACCGAAACGTGCAAAATCAATGGATGCTCTGCTAGGAACTAAACTTAAGTGGATATGAGCCAGCGGTAGTTAACTGCAGCTGGGAGCTAGCTAGTGGTAGTTAACTGCAAGATTGAACGGTAGTTAACTACCGCTGAGGCAATTCTGAAATTTCCATTTTTAGGAACATATTAAAGTCAAAAAATCAATTTTCGGACTATTAAGGGGAAATCTGGTTAAATATATAAGGCAGTTTGCATTCCTTATTTCCCTAGCGTTTTTATATTTCTTCAAGTAAAGGATTCTTCACGAAAAAGGAAGGAACCCTATTGACATTGCGATCTCTTTCCGGATTACAAAATCTGGAAAAACCCGTTACTCATTTTCTCACCTTTAACAAAAGAAAACATCATTCCGGATTATATAATCTGGAATGCTCCGAGGATAATTTTGGAAAAAAATAGGACGCACGAGAAAAGACATAGGGTGGAAAAAGTAATGTTCATTGTTGTATCTGTCAGTAGTACTTTTATATTCGGTTAAAATATGGTTTTGGTCCCTACAAATATGCCTCGTTTTGGTTTTAGTCCCTGTAATTTTGTTTTTGTTTTTGGTCCCTTCAAAATATTTTCTTTTTGAAAATAGTCCCTGCANGGACTATTTTCNAAAACAAAATATTTTGCAAGGAGCTTTTTCAAAATCNAAAGANTTTACAGGGACTATTTCTCTAATAAATGAGTTCNGTCATCATGTGCCACGTGTGCAAATCATCACAAAAGTGGACTTAATATGGTACTG | |||||||||
gi|14864707|gb|BI263454.1|BI263454 NF091B09PL1F1077 Phosphate starved leaf Medicago truncatula cDNA clone NF091B09PL 5', mRNA se TGAGGCATATTTGTAGGGACC EST sequence (targeted fragment marked with yellow): GCACGAGTGCCCGTGTAACCACGACGTACTTTGGTGTTATGAAGGAAGCTTTTGAGTCTGTTGGAGCTTTGTTTATCACGGTGAGTTTTGTTTATTTTTAATTTTTTTTTTAAAGAGGTAATAAGTCTTAGTTCTTATTTATATTTAATCCTTTTTTTTTTTTGTAATGAAGCTACNTGCAACACAACTAGTTGATTAAGAACATGGTTCAAGCAAATTAGGGGAATTTGATTGCTAGGGCTTTTTCAAAAAATTGTATGGGTGCATGANATTCATTCAAGTCTGTGTTGACGCTGTTTCAATATTTGACCGCAACTCTAACACAATACGTTATCTCTTTGGTAAAATGGTAGGAATCAATATTTTTTCTATAGGCTAAAATATGGTGTTAGTCCTTGCAAATATGTCTCGTTTTAGTTTTAGTCCCTGTAAAATAAAATTTTTGTTTTTGATCCCTGCAAAAATTTTTTGTTTTTTAAAATAGTCCCTGACCCCATTTTTGTGATGATTTGCATACGTGGTATATGATAACTGAACCGATTTTGTAGTTTTTGGTCCGTCTCTGCAAAATATTTTGNTTTTTTAAAAAGNCCCCTGCAAAATTTGTAATCATTNTATAATGAAANTTTGATTGGTNCANAAATTAA | |||||||||