miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse




mature miRNA: TGATTGAGCCGTGCCAATATC
species: Medicago truncatula
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|33106441|gb|CF069782.1|CF069782 EST670503 MTUS Medicago truncatula cDNA clone MTUS-24C6, mRNA sequence

TGATTGAGCCGTGCCAATATC
|||||||||||.|||||||||
ACTAACTCGGCGCGGTTATAG

EST sequence (targeted fragment marked with yellow):
ATCCAGCTTCAGCAGAGTATATTTTATCAGCTATTTAAAACTGCTGAGCTGATAGAAGCTGGTAATCCGGTTCAAGCGCAAGGGATATTGGCGCGGCTCAATCACCAGCTCTCACCAATTGGTAATCCTTTTCAAAGGGCTTCTTTCTACATGAAGGAAGCCTTACAGTTAATGCTTCATTCAAACGGTAACAATCTCACGGCTTTTTCGCCGATTAGTTTCATTTTCAAAATTGGAGCTTATAAGTCTTTTTCCGAAATATCACCTGTTCTTCAGTTTGCCAACTTTACTTGTAATCAATCCCTCATTGAAGCCTTGGAAAGGTTCGATCGAATTCATGTTATTGATTTCGATATCGGGTTTGGAGTACAATGGTCATCTTTTATGCAAGAGATTGTACTAAGAAGTAACGGTAAGCCTTCACTTAAGATTACTGCTGTTGTATCACCCTCGTCATGCAACGAGATTGAGCTCAATTTCACCCAAGAAAATTTGAGTCAGTATGCAAAAGACCTCAATATATTGTTTGAGTTCAACGTTTTGAACATTGAATCGTTGAACTTGCCGTCGTGTCCTCTACCGGGTCATTTCTTTGATAGTAATGAAGCCATTGGTGTGAACTTTCCTGTTTCAGTTTCATAAGTAATCCATCATGCTTCCCTGTGGCTCTTCACTTTTTAAAGCAGCTAAGGCCGAAAATTGTCGTAACTTTGGACAAAAACTGCGACCGAATGGATGTCCCGCTTCCCTACCATGTTTGTCACGTTCTTTCATGGTACTCAGCTTTGCTTGAA



gi|11904027|gb|BF639869.1|BF639869 NF027E05IN1F1038 Insect herbivory Medicago truncatula cDNA clone NF027E05IN 5', mRNA sequence

TGATTGAGCCGTGCCAATATC
|||||||.|||.||| | |.|
ACTAACTTGGCGCGGGTTTGG

EST sequence (targeted fragment marked with yellow):
GAAAGGAAGAGATTGAAGAAAGCGACGATGAAGAGCGGTGGTTTGGGCGCGGTTCAATCATCGTACGGCGTCCCGGCTGAAACGACGGTGGAGAGGTCTCATCATTGCAGTTCTCGGTCTCGTCATTCTCTCCATGCTCGTTCCTCTCGTCTTCCTTCTCGGTCTCCACAACAGTTTTTACACTTCTGGATATATATATGAACAGAGAAATACT



gi|11957586|gb|AW694845.2|AW694845 NF080F05ST1F1046 Developing stem Medicago truncatula cDNA clone NF080F05ST 5', mRNA sequence

TGATTGAGCCGTGCCAATATC
|||||||.|||.||| | |.|
ACTAACTTGGCGCGGGTTTGG

EST sequence (targeted fragment marked with yellow):
TCGGCACGAGGGAGCGGTGGTTTGGGCGCGGTTCAATCATCGTACGGCGTCCCGGCGAAACGACGGTGGAGAGGTCTCATCATTGCAGTTCTCGGTCTCGTCATTCTCTCCATGCTCGTTCCTCTCGTCTTCCTTCTCGGTCTCCACAACAGTTTTCACACTTCTGGATATATATATGAACAGAGAAATACTCCTTCGGGAGATAAAACAAGTCATGTGAAGGAACTGATCACTAAGTTTGAACCAACTCTTCCCAAGGATGTTCTGAAGAATTATTCTAAAGGAGACAAGAATGGGATCGTAAATACCAATGAAGAAAAACATAGAGGTGTCAAGACGCCGCCGCCGCTGCCACCTAACGCTGCCCTGCAATCACCTCCAACTACTAATACTCCTAAAGTTCATAATCCTAAACATGGTCGCACTGAACAAGTCACCCACCCTAAAGACAAGTTCTGCTGGATGAAACTGGAACGTCGTGTGAGCT



gi|20455996|gb|BQ255243.1|BQ255243 MTNAE61TKM KVKC Medicago truncatula cDNA clone pKVKC-5F1, mRNA sequence

TGATTGAGCCGTGCCAATATC
|||||||||||.|||||||||
ACTAACTCGGCGCGGTTATAG

EST sequence (targeted fragment marked with yellow):
CCCGGGCTGCAGGTTCTTCACAAGTTTAATTTCTCATGGTGGTTTGTTTCATCAGCATCAACAACAATCAATTGGGTCTCTTGATCAGAAGCTACCTCATCAGTTTGTTATGAACCAAAACCAAGCTCAGTTTATGCCTAACCCTAGTTTGGTTTTTCCTTTCACATACTCACAGCAGCAAGAAAACCAAGAGATTCAGCTTCAGCCTCCAGCTAAAAGACTCAATTGTGGAACAAATTATGAAATTCCGAAGATACCCTTCTTGGATTCGGGTCAAGAGATGTTTCTTAGGAGGCAACAACAGCATCAGCAGCAGCAACATCAGCAGCAGCTTCAACTGCTTCCTCACCATCTGCAGCAGAGGCCAATGGCACCTAAGCAGAAAATGGGGAACCCTGGAAGCGGTGGCGGCGAAGATGTGTCGGCTCATCAGTTTCAGCAGGCTATAATTGATCAGCTTTTCAAGGCTGCAGAACTTATAGACGCCGGTAATCCGGAACACGCGCAAGGGATATTGGCGCGGCTCAATCACCAAATTTCTCCTATGGGGAAGCCTTTTCAAAGGGCTGCTTTTTATTTTAAGGAGGCATTGCAATTGCTTCTTCAATCAAATGTTAACAACAGCAACAACAACAGCTTTTCACCAACTAGCCTCTTGCTCAAGATTGGTGCTTATAAATCATTCTCAGAAATCTCACCTGTTCTGCAGTTTGCAAANNNNNCTNNNAACCAAGCATTGCTTGAAGCTGTNGANNNNTTTGATCGAATTCATANNNNNNGATTTGNNNNTGGTTTTGNNNGNNCATGGTCTTCANTNNNG



gi|27404216|gb|CA917286.1|CA917286 EST641433 GPOD Medicago truncatula cDNA clone GPOD-35P5, mRNA sequence

TGATTGAGCCGTGCCAATATC
|||||||.|||.||| | |.|
ACTAACTTGGCGCGGGTTTGG

EST sequence (targeted fragment marked with yellow):
GATAAAAAAGAGAATGAGAAAGGAAGAGATTGAAGAAAGCGACGATGAAGAGCGGTGGTTTGGGCGCGGTTCAATCATCGTACGGCGTCCCGGCGAAACGACGGTGGAGAGGTCTCATCATTGCAGTTCTCGGTCTCGTCATTCTCTCCATGCTCGTTCCTCTCGTCTTCCTTCTCGGTCTCCACAACAGTTTTCACACTTCTGGATATATATATGAACAGAGAAATACTCCTTCGAGTCCAAATATTATTGAATACAATAGGCATGATGTTCGCCATAAAGAGGATAAGTCTGAGGGAGATAAAACAAGTCATGTGAAGGAACTGATCACTAAGTTTGAACCAACTCTTCCCAAGGATGTTCTGAAGAATTATTCTAAAGGAGACAAGAATGGGATCGTAAATACCAATGAAGAAAAACATAGAGGTGTCAAGACGCCGCCGCCGCTGCCACCTAACGCTGCCCTGCAATCACCTCCAACTACTAATACTCCTAAAGTTCATAATCCTAAACATGGTCGCACTGAACAAGTCACCCACCCTAAGACAAGTTCTGCTGATGAAACTGGAACGTCGTGTGAGCTCACATATGGTAGTTACTGTCTGTGGCAACAGAACATAAAGAAGTTATGAAAGAC