mature miRNA: TGCCAAAGGAGATTTGCCCTG species: Medicago truncatula database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
Predicted miRNA targets | |||||||||
gi|13781151|gb|BG646039.1|BG646039 EST507658 KV3 Medicago truncatula cDNA clone pKV3-48E12 5' end, mRNA sequence TGCCAAAGGAGATTTGCCCTG EST sequence (targeted fragment marked with yellow): TCTCCTTTGGCAATTCGGAGTCATAATAGACCTCCAGTTATCCCTGTCCTGTTGGGCAAATCTCCTTTGGCATTTAATTTTTCAGTTTCAGTGGTGAAGGTATTCTTTCTTTTCAAGAAAACTGGCTTTGTATCTGTGACAAGCATAGGTATCAATCAGACACATTTTGTATTATATACAGAATATCCTCTGAAGTTGGTATCGACTCATCCGTTGTTGATTGCAATACATACGGACTCTGGTGTTTAATGTTTCTACTAGCTTGGAAAGGCATATAGTTGATGGAAGCTCAGATGACTGATTCAGACTGGGAGTCTTCCAGTGAGAGCAGCGGCAGTGACGATCAAGAGGATATTGATTTTCTCTATGGTGGCCAAGCTCAGAGCATATTATCAAGTTTAGAGGAAAGCATCGGTAGGATAAATGATTTCCTCTCATTCGAGAGAACATTTGCATACGGCGATGGTTGTGTGCTCCTTGTCAGACCCATCTGGACAGATGGGGGAGGGGGTCGTAAGTGTTGACCGTGTTAGTGGAATTTGGAAAACATTCAAGGGAAATGTATTAAAAAATGTGAACTCCAAGAAACTTCTGAAGATTCGTTCCATTTCGGAAGGTGATTGCGTAATTAACGGTCCGTGGCTTGGTCAGGTTCAAGGGGTGTGG | |||||||||
gi|13779528|gb|BG644416.1|BG644416 EST506035 KV3 Medicago truncatula cDNA clone pKV3-37A6 5' end, mRNA sequence TGCCAAAGGAGATTTGCCCTG EST sequence (targeted fragment marked with yellow): AAAACAGAAAAATATCTCATAATTTTAGCTACTAGCTGGTTTATATTTGTTGTTTGAAGTGTTTCGTTCTGTGAAATATTTCATTCGCAATTGGGCATATCTCCTTTGGCACTTTGGAGTCCTTGATTGATTCCTATTATCCTGGCGGGCAAATCTTCTTTGGCATCAGATCTCTGGTTTCAGTAGTTGAGATAATCTTCCGGAGATACTGAATATCAAATGCATCTGCCCAGTATAAACTGAACGTGATGTTTAATTTTCAGGACTTGTTAAATGGTGATGGTAGAAAAGAGAATTATGAACAGAATCTTGAGTGTAGTTCCTTTTTCCTTCCACGAGTGGCCTTTGAACTTTTCTCCAGTGTTAAATCCAGCATATTCCAAACACTTGGTGGAACTTCCATTTCAGGAGCATTTTCCTCATTGCAATCTCTATTGACCCAAACAGACTCTATTTATGTTCGTGTGTTTGAAGAAAGAATGGATCTCATGCGAGCAGTAATTGTTGGTGCATCTGGAACTCCGTATCATGACGGGTTGTTCTTCTTTGATATATGTTTCCCTCCAGAGTATCCTAACGAACCACCAGTAAGCTTTTAAGTGTAGTTTGCAGTGCTTGTATTTTTTTTTTACAGCACCATTGTTTATAAGGCCCTTCACTTATGTTCAAGATCTCTAGATAAAAGCTCCAACTCTGAACAAACTCTAATGTTATCAATGTGATCTTTGAATGCAGATGGTGCACTACAATTCTGGCGGGCTCCGCTTAAATCCTAATTTATATGAATCAGGGGAAATCT | |||||||||
gi|57563941|gb|CX538356.1|CX538356 s13dNF80D11GS090_459964 Germinating Seed Medicago truncatula cDNA, mRNA sequence TGCCAAAGGAGATTTGCCCTG EST sequence (targeted fragment marked with yellow): GCTTAAACTCCATTTTCACATTAGAGTGAACAAAAAAAAACAAGTGTCTCTGAAATGGTTTCCAAGTTCAATGGTGGCGTTGACGATGGTGGAACTGGGCGTGGAACCAAGCCTATCTGAATTAACAACACAACCCATCTTTTGAAACTGTAAAAAGATCAAATTTTTAGTTTCAACTTGTTATGTTATGTTCATATTTTGCTGTTTAAAATCATGGGCTATCTTGGTTTCTTAGCTTGGCTCTATAAACTCTAATTCTAGCTTTTATGGGACCAACCTTCTTGGTGGTCCAAATGGTTCAAAAGAAATGATCTGGTATTAAAAGCTCTTTCGACTTTTGGCAATTGCAGTCGTGTTTTGAATCAGACTTTCTTCTGTCAGAAAGTATATGTTTGATCTGTTTTCTGATGATATTCTTGATTTCAACTTCAAAACTTTGTTGATTCTGGATATCAATCAATCTCCCTTAATACCAGATAGATCTGGTAGAGTGTTTAGCTTCACCGTGGGGCAAATCTCATTTGGCAATATAGTTTCTGAGTCTCAATCTTGGAAGAGGCAAATTTGTTAACTAGTATCTGGAAATTACTTATGTTTGAAGATTCACCTGTATCGGGNCAATCTCCTTTGGCAAAAGTTACTTA | |||||||||
gi|7566618|gb|AW691882.1|AW691882 NF045B07ST1F1000 Developing stem Medicago truncatula cDNA clone NF045B07ST 5', mRNA sequence TGCCAAAGGAGATTTGCCCTG EST sequence (targeted fragment marked with yellow): CTTCACAAACAGAGAGAGAGAGAGAAAAAAAAAGTGTCTCTAAAATGGTTCCAAAGTTCAGTGGTGGCGTTGATGATGATGGTGGAACTGGGCGTGGAACTAAGCCTATCTGAATTAACAACACAACCCACCTTTTCAAACTGTAAAAAAAATCAAATTTTTAGTTTCAACTTGTTATGTTATGTTCATTTTTCGAGTGTTTAAAATCATGGGCTATCTTGGTTTCTTAGCTTGGCTCTATAAACTCTAATTCTAGCTTTTATGGGACCAACCTTCGTGGTGGTCCAAATGGTTCAAAAGAAATGATCTGGTATTAAAAGCTCTTTCGACTTTTGGCAATTGCAGTCGTGTTTTGAATCGGACTTTGTTCTGTCAGAAAGTATATGTTTGATTTGTTTTCTGATGATATTCTTGATTTCAACTTCAAAATTTTGTTGATTCTGGATATCGATCAATCTCCCTTAATACCAGATAGATCTGGTAGAGTGTTTAGCTTCACCGTGGGGCAAATCTCCTTTGGCAATATAGTTTCTGAGTCTCAATCTTGGAAGAGGCAAATTTGTTAACTACTATCTGGAAATTACTTATGTTTTGAAGATTCAAGCTGTATCGGGCAAATCTCCTTTGGCAAAAGTTACTTAATTTTCTTTGGTGTT | |||||||||
gi|7205416|gb|AW559990.1|AW559990 EST315038 DSIR Medicago truncatula cDNA clone pDSIR-26A19, mRNA sequence TGCCAAAGGAGATTTGCCCTG |