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mature miRNA: TTCATTTCTAAAATAGGCATT
species: Medicago truncatula
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|157981973|gb|EX530245.1|EX530245 MTGland_A064_2007-06-13/MTGlandA064_F12_043_1 Medicago truncatula A17 glandular trichome Med

TTCATTTCTAAAATAGGCATT
| |||||||||||| |.|| |
ACGTAAAGATTTTACCTGTTA

EST sequence (targeted fragment marked with yellow):
TACGGCCGGGNNCCTCCTTTTGGGATTGTCCATTTTAGAAATGCAATGGAAAACAGTGCAAGTAGGATTACCAAGAGGAGATTGTTAAGTGCTATGGGTGGAAGTGTAAACNTCCNCCAATTTGTTTCTAATGAGGATGACGGTAAACCCNTTATGTAAAGGCAAGGAATGAAAACNAAGGTTGTGGAAGAATGCAAAAGAAAGATGGGACTTGGGAGGAGAGGTTAGAATGCTTGGTATAAATAGCTGTGCATGCATGGGATGAGATAGAGGTTTTTGGGGTAGGGTAAATTTG



gi|260524116|gb|GT144752.1|GT144752 METCV80TR JCVI-MT3 Medicago truncatula cDNA 3', mRNA sequence

TTCATTTCTAAAATAGGCATT
.||||| ||||||||..|||
GAGTAATGATTTTATTTGTAC

EST sequence (targeted fragment marked with yellow):
GACTTTGCAGAAATAATATTCCAGAATGATGAAAACACTATTCAGTCATGGCACATGGATGGATCTAGCTTCTATGTAGTTGGATTTGGCAAGGGTAAATGGACACCCGATGTGAGACGCACTTACAATTTGGTTGATGGTATTACAAGATACACTACTCAGGTGTATCCAAACTCTTGGACTACCATTTTGGTCTCTTTGGACAATAAGGCCATGTGGAACTTAAGGTCTGCAATATGGGAAAATCGGTATTTGGGACAAGATTTGTATATGAGGGTGTGGAACAATGAGCAAAGCTTATACACTGAGACCAATGTTCCTTTGAATGCATTGTTTTGTAGCAAAGCTAAACACTTGCCTAAATTATAAGCATTCCAAGAGGGATCTACAATTTGATTATTGGCATAATTAAGTTTGTAATTGAGTTTTTTCTTCTTTTTATTCTTAACATTACTTTGTTTAGAAATTTCAGTTACGAGGGTGTGACTGTCGTGAAAAATGAAAGGAAAAGGGTCATGTTTATTTTAGTAATGAGTCTCCTAATTGATTTGATGTTTCATTAGATTATTATTTATTGTAATCAAAATGAATAATAGTTATGTCACCTCGTTCCCATTGTTTGCCACAAAAAAAAAAAAAAAAAAAAAA



gi|13367553|gb|BG448772.1|BG448772 NF044F02NR1F1016 Nodulated root Medicago truncatula cDNA clone NF044F02NR 5', mRNA sequence

TTCATTTCTAAAATAGGCATT
|| ||||||||||||. ||||
AACTAAAGATTTTATT-GTAA

EST sequence (targeted fragment marked with yellow):
AACAGAACACTGCAATTTCCGAAGTAATCATCTGTTACAATGTTGAAGAAATTGTTTATCTCCCACAATGTTATTTTAGAAATCAACGCAACAAAATCAACAACCCCAAAAATTGATCATCTTTTTCAACACTTCTCATTCCCAATTTCACTCACAAGATTCAGCACCACAACATCAACATCAGAATCCAACACTCACCCATTCGCTGCATCCTACCTCATCGACAATTTTGGTTTCTCACCTCAATCTGCTCTTAAAGCTTTCAACAACAAACAGGTTCGTTTCAATACCCTTGAAAAGCCTAATTCAGTTCTCACCTTCTTTCAAAATCATGGCTTTTCACACGAAAACATACGCATCATCATTAGAAAAGAACCATGGTTACTTTCATCACAACCCCACAAAATGTTATTGCCAAAGTTTGAATATTTTCTATCCAAAGGTGCTTCTTCAGCTGATATTGTTTCATTGTTAACTGCAAACCCTACAATTTTACGAAGTAGCTTGGGCAAACGAATAATCCCTCTTTTTGAATTGTTAAGTAGGGTTCTTTAAAACCAACAAGGATATCATTGTTTGCTTACTTCGACATTCAATGTCGTTTATTATTANCCCATATCACCTTATTGTGGCTAATATCAATTTGATAACTGGTTTTGGAGTTTCTGATTCTAC



gi|6604068|gb|AJ388800.1|AJ388800 AJ388800 Medicago truncatula R108 Medicago truncatula cDNA clone MtNo163, mRNA sequence

TTCATTTCTAAAATAGGCATT
|| ||||||||| ||.| |||
AAATAAAGATTTCATTCTTAA

EST sequence (targeted fragment marked with yellow):
CTCTTAAGTTTGTGTATGCTATGATTATATTTCTTTCCTTATTTCTTATGGCAACAAACATAGACAGCGCACTTATTGAATGTCAAATTGATGATGATTGTCCGCCAATTAAATTTGCCAAGTATTTGTGTATTAACTACAAATGTAGAAAGATTTGTTTGGGTGAATGAATTCTTACTTTAGAAATAAAAAATAAAAAAATAAAAAATTCTCCAAATGTGTCAAAAAAAAAAAAAAAAAAAAAAAAA



gi|11901119|gb|BF636961.1|BF636961 NF074E07LF1F1052 Developing leaf Medicago truncatula cDNA clone NF074E07LF 5', mRNA sequence

TTCATTTCTAAAATAGGCATT
.||||||| ||||| || |||
GAGTAAAGTTTTTAACCTTAA

EST sequence (targeted fragment marked with yellow):
CAAGAAGCATCAAATTGTATAGTTAGAGTTCTGGGAGCAGAAGACCTGCCTGTTTTTGCCCTTCAAGATGATAGGGTGGTTGAAGTAGTAGGGGATCCCATTGGAGTGCACAAGGCAGTAGAGATGATTGCATCCCACCTTAAGAAATTTTTAGTTGATCGCAGTATAATTCCAATTTTTGAAATGAGCATGCAAATGGCTAATAACCACCCTGTGGAGCACATGCCAGTGCCACCCCCACCCCACCAATCATGGGGTCCACCTCAGGGTCTCCCACCAAACGCTGGTGGAGGTCCTGGATTTGGACTTGCTCCTCAATTCATGCCACCTCGAAGGCAAGTTGATAATTACTACCCACCAGCTGAAATGCCCTCCTCCATTGGACAAACAGCCCCATCATGGTATATCCGCCTATGGAAGAGATGCTTCAATAGGCGTTCACGCATCATCCAATACTCAGTCTG



gi|9686444|gb|AL386693.1|AL386693 MtBC36C07R1 MtBC Medicago truncatula cDNA clone MtBC36C07 T7, mRNA sequence

TTCATTTCTAAAATAGGCATT
||||||| |||||||.|| |.
AAGTAAACATTTTATTCGAAG

EST sequence (targeted fragment marked with yellow):
TGAGAGAGCTTCTTGCTGCATCAAATTATTCATATGGAGAACATGATAGAAAAATACACGGAAGGAGGATCTTGATTGAGGTTGGCCTATTTTGGAGGCACAAATTTGTATGATAACTCAAATGCAGGACTGGTTGGGGTTTGTTATGCTGAGCTTGTCAAACCAAATGATTTTCATATCCAATATTTCCCTGAGGATTTTGGAAGAACACCTGCAAAATTTGTAAAAATATATCCGAGGACAAAGTCGGACAAGTGAGCCAGGGAAGCTTATTTTACAAATGAATAGAAAGATTTCTATATTGTGAGTCCATTGAAGGGAGGAAGTAGAATTGTTCTTGCTGTGGATAGAGATGACCCTACAAATTTTATACAGGATCCTGTCATATATATAATTATGAAATGAGTGAAGTAAACTTGTGAAATGTTTGTATTATTTTTCTTTGAATTTTGAATGTATTTTTGAAAGACTGTTCTTCTCAGGTGAGTTGATTACTTTTCAGATAAAAAAAAAAAAAAAAAAAA



gi|20288357|gb|BQ151298.1|BQ151298 NF073C10LF1F1071 Developing leaf Medicago truncatula cDNA clone NF073C10LF 5', mRNA sequence

TTCATTTCTAAAATAGGCATT
||||||| |||||||.||| .
AAGTAAACATTTTATTCGTTG

EST sequence (targeted fragment marked with yellow):
ATGATGACGCCAGCTCGAAATTAACCCTCACTAAAGGGAACAAAAGCTGGAGCTCCACCGCGGTGGCGGCCGCTCTAGAACTAGTGGATCCCCCGGGCTGCAGGAATTCGGCACGAGGCCTCAGTGCCACATTCGGAACAGATGATTACTTTTATACAACCAACAGACTCCTGTCATGCACTGAACCTAATAACGATTCTTTAGCAGGCGCATAAGATGCACTAACTCTATCACAAACGATTGTGGGAAATACCACTATTGAGCGTACAGACACTTGTGGAATATGCTGTAATTAATGTGAATAAAATCGTAAGGATAATATACTCCCATAGCAGCTGATTATGTGCTCTCCATACCTCAACAGCCATCCAATCCTGAACGTGTGATTAATGGGCCTAAAAAAGGTTGACGTTGCTTATTTTACAAATGAAACCATTATTGATAAGACTTTAGAACCCTAACATCAATCCATTGATCAACCATTAATGAAACAATACACGCAATCCCCTTTCAAAGACTAGTGAATATACAACGCCTAGGAAATTCTACTCTTATACCACTCTTCGTATCACGAGTTTACTACAGAGGATGCCAACTCATGAAACAGCCACATATGCTTTGCTAATACACCTAACTGATGACACCTTTAAACCTGACAACCTTGACCCATATTGAAGGACCCTTTGTAAGTTTTCAAAAGACGGGTCTTTCAATTTAAGAAGAAAAAAATAGAAATTTGAATGGGGCGGCCACGGAACACCTAATCTTCCCTGTGGGAAGCGGATGCCATTCCTTTTCCCATCATTTCACTTGGTCGCATTACGGGGAAACCCAAGAGCCTTTACCTGGGCTATATTTTTGTACCCATCT