| mature miRNA: TTGGACTGAAGGGAGCTCCC species: Medicago truncatula database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|83665196|gb|DW015604.1|DW015604 EST1224565 MTY Medicago truncatula cDNA clone MTYA742, mRNA sequence TTGGACTGAAGGGAGCTCCC EST sequence (targeted fragment marked with yellow): CGGCCGGGGTAATGCCCCAAAAGATATTACGAGCCCTTGATATTAAACCTCTGCCTGTGTTATGGCATGAAGACAATAGTAGGCGGCATCAAGCCAGAGAAAGACAACAGGTACCTGGAGCAATTGCCGGTCCTCAACTAGGAGAAGCAGCTCACCGTCTTGTCAGAAACTCCCTTCAGTTCAATAATAATACATCCTATCCGGACCAGTTTCCAAGCCAGCATGCAATGAACAGGGTCAGACCAACTGGAGCCTCTGGATCTGGAAAATATTACGGTGAGGAATCAAGTGGTTATTATGGACAAAATTACAATCCCCAGGGCATGATGACCAGGCCTAGATTTCCAATAGCGTCTAATGGTTGGCAAAATGACAGACAGAATATTAGGATACAAGATAGGTCACAGCATCATGAACAGTTCCACAACATGAAAACTGGATTCCAAGCTTTGACCATAGATGGAGGTGTGAGACCTAGGTCATCTGCAGTGCCTTCACCAAAAACACCTGCAATGATGTTAATGAGGCCGCAAAATTCAGGGCACACAACCAATCTACAACCCCAATTCGTCCAGAACATTGGTCCTCCTATTCCACCTCCAAATTGGATTAGTAAAGCTCCAGATACGAATGGAATGTATGCTAGACATCAAGAAGCTGCAGTAGGGGGAGCTTATGATAAACCCATCAAGAAGGTGTACCAAATTAAAACTCGTAATCCCCAAGATATGCC | |||||||||
gi|157981721|gb|EX529993.1|EX529993 MTGland_A061_2007-06-22/MTGlandA061_E04_012_1 Medicago truncatula A17 glandular trichome Med TTGGACTGAAGGGAGCTCCC EST sequence (targeted fragment marked with yellow): TATTTNTTTNNANNANGAAAACTTCATCNTGACTTTNNTTNNTNNNCATTTCGAGAAAAAAANNNNNNTAGCCCCAGATCTGTCATCTCAAATACTTTTGTCATCTCCATCTTGAATTCATCAATCAAGGTTGAATTATTTTCAGTGACAAAAATATCATCAACATAAAGAGATATAACAAGAATATCAACCTCACATTGCTTAATGTAAAGAGTGGATTCAGATAAACTTTTAGCAAAGCCTAAACACAACATATGGTTATCTACTCTATTGTACCAGGCTCTTGGAGCTTGCTTCAGTCCATAAAGACCTTTCTTGAGGAGATAAACCTTGTCTTCTTCTCCTTTCTTCATAAAGCATTTGGGTTGTTCAACATAGATTTCTTCTTGCAAGAAACCATTTAGAAATGCTTATTTAACATCTAATTGGTACACCTTCCAACCCATTTGTACTGCAACAGCAAGCAACAACCTAATAGTATCTAGCCTGGCAACTAGTGCAAATGTGTTTGAGTAGTCTACTCCAAAAATCTGAGCATAGCCTTTAACCACCAGCCTCGCCTTGTGCTTGTTGATGGAGCCATCAACATTTAGCTTGGTTTGAAACACCCACTTAACCCCAATGATTTTTCTGTCTTGAGGTCTATCAACAAGTTGCCATGTATTATCACTTTAGTAAGTAATAGAAAAAATATCACTTTGTAGGCCGGTAAAAGTGAGAAGTAAAGTTCATAAATCCNACTAAATTGTCAAAATTATTGGAGCAAATATCATGACCGANANTGAAGCTGAACTCGGCACTTATATTTGTGAGTATTTAATAATTATTGTGATATTTGGNTTATCACCTAATAGAAAAAGCCNCNAA | |||||||||
gi|57567005|gb|CX539980.1|CX539980 s13dNF43D07GS058_463232 Germinating Seed Medicago truncatula cDNA, mRNA sequence TTGGACTGAAGGGAGCTCCC EST sequence (targeted fragment marked with yellow): GCTGATGTTCGTGTGAGCCGTGTCAAAGCTAGAGAAAGAGCAAGAGAAAGAACTGCTAAGGAGAAGGACAAAGAGATTAATCATGAATCTCACAATACTCATCAACAGCATCACAACAATGTGACCTCTTCCATTTCTCAAACAGCTTCATTCACTGAACTACTTACTTGTGGAATCAACAATACTGTTACTACCACAAATAGTCCAAGAGGGTCAGCTGAAGAACCTAGTTTTTTCAACAAAGCTAGACAGCAACAGCAGCAGCAGCAGCAATGGAATTCTTCAGCACCAATGGATCATTACTTTAGTCAAGTATTTCCAGGATCTTCATCATCAAGGGCACATCATCATCATCATCTATTAGGACATTCACTTCATGATCATCAATCAATGACAATGTCTAATTCAGTTTCACCATTCAGTACTAGTGGTGAGAATCATTCTCAAGATCAGCATCAGCATCATTTGCAGCATCCATTTTCATTCATACCAGATCATATGATGCAAAATGTGGTTACTTCTTCTTCTACTCAACCAAGCGGGAACAACAATGATTATAATCTGAATTTCACAATCTCTTCGGGCCTTGCTGGTTATAATAGGGGGACCCTTCAGTCCAATTCACCGTCTCTTTTGTCTCATCTTCAA | |||||||||
gi|57493136|gb|CX524417.1|CX524417 s13dNF15F04AT032_448178 Aphid-Infected Shoots Medicago truncatula cDNA, mRNA sequence TTGGACTGAAGGGAGCTCCC EST sequence (targeted fragment marked with yellow): GGCACGAGGAACTTCTGGTCTTTACTTTTTCCTTTTTATCTATTTGGAGAAGGTACTACCTTATAGATCTCAAAGTCCATCGTCATCAAAATATTGTGATGGATCTGATCTGAGACATGAGATCTAGTCTCTAGATTTTTTTGCAGTTAATTATTTTCTTTTTCCTATTTTTGTTAATTTCTCTATGATTCTCATATTTTCTAAACGATTTTTGCAGCTAATATTTTTTTGACTAGATTTACTTATTTTAAATTTTACTTTATACAAAATAAAATCTAAATTATTTCAATGAAGGTGAAGCTTTGATGTTAGGGTTTAAAGGGGTGGAGCTTCCTTTAGTCCAAATATGGATCTTGCTATGTTGATAGAGCTGCTTAGCTATGGGTCCCTCAACTCTACCCATCTTGTTCTTTGTGGTAGTTTTGTGGCTTCCATATCTAGGGAGCCTTATCACCTTTAGTTTAATCTTTCTTTGGATTGAAGGGAGCTCTACATCTTGCTCTCTTACTTTAATTTTA | |||||||||
gi|13373191|gb|BG454481.1|BG454481 NF112F05LF1F1044 Developing leaf Medicago truncatula cDNA clone NF112F05LF 5', mRNA sequence TTGGACTGAAGGGAGCTCCC EST sequence (targeted fragment marked with yellow): ATTTTTTTTACTCATAAGTCAGGATTCGATCGTAAGTTGATAATCCAAGTTATTGATGATCCAATTTGAATAATACTCTAAACAATAAAACCATCAGCCAGTTTTCCTAAATCAACAACTGTATTTTCAGGTCACCCCAGATCCAAAGAAGATCAAGATGCTCACTTTTCTATCATAAAGCTAACAAACCCTTCACTTGGCACTGTGCTTGGCCTTATTATGAGAACCTAAGGCATCTTCAGTCTTAAAAGACCTGTTACAGGGCTTGCAGCTGTAATCTCCACTAGACTTTGGAGTCTCCTGCTTCTCTGGCTGCTTGTTATTTGCAGCAGATTTACCAGCCTGCTTAGGGTAAGGAGTATCAACGTGGACACTACTCCTGCCACCAGTCTTCTCTGGAGTGACAAATTTTGCCTTCTTCACAGGTACAGGTGTTTCCTTGGAAGATTCAGCAACCCTCTTGTTGCTCCCTTCAGTCTAAAACAAAACTCAAAATTAAATTCAAATTCAGAGACAAATCGAAGCACAATATAGTCTCCAGTTACCTTCTTCGGTGTCTCCTCATCAGAATCTTCATCGCTTTCATCTTCACTACTACTTTTAATTTGACCATTCGCCATGAGCTAAACGGCACATTACCAAAATAAACTAAAAATATGAATT | |||||||||
gi|260525511|gb|GT140821.1|GT140821 METBK88TR JCVI-MT3 Medicago truncatula cDNA 3', mRNA sequence TTGGACTGAAGGGAGCTCCC EST sequence (targeted fragment marked with yellow): AAGATCAGCATCAGCATCATTTGCAGCATCCATTTTCATTCATACCAGATCATATGATGCAAAATGTGGTTACTTCTTCTTCTACTCAACCAAGCGGGAACAACAATGATTATAATCTGAATTTCACAATCTCTTCGGGCCTTGCTGGTTATAATAGGGGGACCCTTCAGTCCAATTCACCGTCTCTTTTGTCTCATCTTCAAAGGTTTGCAGTTTCACCTTTAGATGGATCCAACAATCTACCTTTTTTCATGGGAGGAGGTGGAGGAGGTGCTTCTGCTTCTTCTTCTCCTGCTTCAGCTTCACCTTCAGCTGCTCCTACAATGGAGAATAATCATCATCACCATCACCAGATTCAACACCATCTGATTTCATCTGTTTTTGATGGTAGCAGCTTGCAGCTCTATTCAGATCAGAAAGGGAAACCCAAAAACTGAAGAGTTTCACTTTTCCTCCATTTTCTTCTAGCAGGACTTTCGAAAAATGGAGTACTAGCAGCAAGATGTGTTCCAATTCAAGCTTGCCTTCACCAAAGCAGTTGAGATATATATGCTAGCTGTTGGCATCAAGTGTTGGTTGGGATCATTTTCAAGTCATTCAATTTGATTCAGTATTTTTGGATACAATTAAATATATTTATTTATTTATGTATGTGTGCAAAGATCATTGTGTTTTGGAGAAATGTAAAAGCTACTTAATTTGACATCTGAATTTACTTTTTCCCTCATTTTTAAAGTCCAGTAGCACAACACTACTACATAAGCTGAAAAAAAAAAAAAAAAAA | |||||||||
gi|11962708|gb|BE322664.2|BE322664 NF048C12IN1F1087 Insect herbivory Medicago truncatula cDNA clone NF048C12IN 5', mRNA sequence TTGGACTGAAGGGAGCTCCC EST sequence (targeted fragment marked with yellow): GTTGTGTTGGGTTCTCTCTTCAATCCAATCCAATTCAACCCATCCTTCACCACCATGTCCTTCCAATCCCGATCCATCTTCTTCCTCTTCTTCTCTCTCTTCATTTCTTCAACCTTCGCTTCAGAATCAGATCACAAGTATCAACGGGATGATCCAGTTAACCTTTGGGTGAACAAAGTTGGACCCTATAACAATCCTCAAGAAACTTACAATTATTACAGTCTCCCATTTTGCCACCCATCTAGTACTTCTGCTGCTGCACACAAATGGGGTGGTCTTGGTGAGGTTCTGGGTGGCAATGAACTCATCGACAGCCAAATTGAGATCAAGTTCCTAAGAAATGTGGAGAAGACTGTCTTTTGCCAGATGGTTCTTGATGATGCAAAGGTTAAACAGCTTCAAGCATGCAATAGAGAATAATTACTGGTTTGAATTTTTTCATGGATGATCTTCCTTTGTGGGGATATGTTGGTGAGCTACATCCTG | |||||||||
gi|7563585|gb|AW688849.1|AW688849 NF012D07ST1F1000 Developing stem Medicago truncatula cDNA clone NF012D07ST 5', mRNA sequence TTGGACTGAAGGGAGCTCCC EST sequence (targeted fragment marked with yellow): GTTGTGTTGTGTTGGGTTCTCTCTTCAATCCAATCCAATTCAACCCATCCTTCACCACCATGTCCTTCCAATCCCGATCCATCTTCTTCCTCTTCTTCTCTCTCTTCATTTCTTCAACCTTCGCTTCAGAATCAGATCACAAGTATCAACGGGATGATCCAGTTAACCTTTGGGTGAACAAAGTTGGACCCTATAACAATCCTCAAGAAACTTACAATTATTACAGTCTCCCATTTTGCCACCCATCTAGTACTTCTGCTGCTGCACACAAATGGGGTGGTCTTGGTGAGGTTCTGGGTGGCAATGAACTCATCGACAGCCAAATTGAGATCAAGTTCCTAAGAAATGTGGAGAAGACTGTCTTTTGCCAGATGGTTCTTGATGATGCAAAGGTTAAACAGTTCAAGCATGCAATAGAGAATAATTACTGGTTTGAATTTTTCATGGATGATCTTCCTTTGTGGGGATATGTTGGTGAGCTACATCCTGATAAGCATAGTGATAATGGCAAGCACGTCCTTTACACACACAAGAATATTATTGTTAAATACAATAATGANAGATCATTCATGTTAATCTCACTCAAGACGTCCCAAAGCCTTTGGAGGCANGAAAACATTTGGATTTGACATATTCTGNCAAATGGGTTNCTACTAATAT | |||||||||
gi|83666618|gb|DW017026.1|DW017026 EST1225987 MTY Medicago truncatula cDNA clone MTYAO56, mRNA sequence TTGGACTGAAGGGAGCTCCC EST sequence (targeted fragment marked with yellow): CGGCCGGGGGTGTAGTAATGCCCCAAAAGATATTACGAGCCCTTGATATTAAACCTCTGCCTGTGTTATGGCATGAAGACAATAGTAGGCGGCATCAAGCCAGAGAAAGACAACAGGTACCTGGAGCAATTGCCGGTCCTCAACTAGGAGTAGCAGCTCACCGTCTTGTCAGAAACTCCCTTCAGTTCAATAATAATACATCCTATCCGGACCAGTTTCCAAGCCAGCATACAATGAACAGGGTCAGACCAACTGGAGCCTCTGGATCTGGAAAATATTACGGTGAGGAATCAAGTGGTTATTATGGACAAAATTACAATCCCCAGGGCATGATGACCAGGCCTAGATTTCCAATAGCGTCTAATGGTTGGCAAAATGACAGACAGAATATTAGGATACAAGATAGGTCACAGCATCATGAACAGTTCCACAACATGAAAACTGGATTCCAAGCTTTGACCATAGATGAAGGTGTGAGACCTAGGTCATCTGCAGTGCCTTCACCAAAAACACCTGCAATGATGTTAATGAGGCCGCAAAATTCAGGGCACACAACCAATCTACAACCCCAATTCGTCCAGAACATTGGTCCTCCTATTCCACCTCCAAATTGGATTAGTAAAGCTCCAGATACGAATGGAATGTATGCTAGACATCAAGAAGCTGCAGTAGGGGGAGCTTATGATAAACCCATCAAGAAGTGTACCAAATTAAAACTCG | |||||||||
gi|14863450|gb|BI262808.1|BI262808 NF094E10EC1F1083 Elicited cell culture Medicago truncatula cDNA clone NF094E10EC 5', mRNA seq TTGGACTGAAGGGAGCTCCC EST sequence (targeted fragment marked with yellow): CAATCTTCAACAACGTTAATTACTATTATAGTCTTTCTTCTGTTCAGTTTCTCTCTTTCTCTTCTCGTAACGCTTTTGTGTTGTGTTGTGTTGGGTTCTCTCTTCAATCCAATCCAATTCAACCCATCCTTCACCACCATGTCCTTCCAATCCCGATCCATCTTCTTCCTCTTCTTCTCTCTCTTCATTTCTTCAACCTTCGCTTCAGAATCAGATCACAAGTATCAACGGGATGATCCAGTTAACCTTTGGGTGAACAAAGTTGGACCCTATAACAATCCTCAAGAAACTTACAATTATTACAGTCTCCCATTTTGCCACCCATCTAGTACTTCTGCTGCTGCACACAAATGGGGTGGTCTTGGTGAGGTTCTGGGTGGCAATGAACTCATCGACAGCCAAATTGAGATCAAGTTCCTAAGAAATGTGGAGAAGACTGTCTTTTGCCAGATGGTTCTTGATGATGCAAAAGGTTAAACAGTTCAAGCATGCAATANAGAATAATTACTGGTTTTGAATTTTTCATGGATGATCTTCCT | |||||||||