| mature miRNA: ATTGAGTGCAGCGTTGATGA species: Mimulus guttatus database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|53842368|gb|CV515836.1|CV515836 0048P0011Z_C02_SP6 Mimulus guttatus library 1 Mimulus guttatus cDNA clone 0048P0011Z_C02, mRN ATTGAGTGCAGCGTTGATGA EST sequence (targeted fragment marked with yellow): AATCAACCCATCAACAGCGCTGTATTCAAGAACCCCCTTTCTAATTCCCAAGGATTTTCCGGCGGAATTATGCCGGTTATCGCCGAACCAGAAACCCCTCTCGAGGAATCCAGAAAATGGGTTCTCCAAGAAATTTACAACCAGAGCCAAGGCGGCCGCCGGCGTGGCCGAGCCGGCAAGAGCCGAGCCGCCGTCTAAGGAAAATAAGAAGATGAGGGTTTTGGTGGCCGGCGGCGGAATTGGGGGGCTGGTTTTCGCTTTGGCGGCGAAGAGGAGAGGGTTTGACGTGGTGGTGTTTGAGAAGGATTTGAGTGCAATTAGAGGGGAGGGGCAATACAGGGGGCCGATTCAGATACAGAGCAACGCATTGGCTGCTTTGGAAGCCATTGATATGGATGTTGCTGATGAGGTTTTGAGCTCCGGTTGTATCACCGGCGATCGGATTAATGGCTTGCTTGATGGCATTTCCGGCAATTGCTACGTGAAGTTCGATACTCTCACCCCTGCAGCACAACGAGGACTTCCACTTACTACAGCCATTAGCCCAATGACTTTACAACAAATCCTAGCTCGCGCAGCCGGCTCCGACATTATTATTAATGATACCAACGGCTCTGATCTTAATGACGACCGCTCCCATCGCGACTGTACCTC | |||||||||
gi|238356314|gb|GR112787.1|GR112787 CCBG5560.g1 CCBG Mimulus guttatus IM62 floral buds (H+L) Mimulus guttatus cDNA clone CCBG556 ATTGAGTGCAGCGTTGATGA EST sequence (targeted fragment marked with yellow): TTTATTTCCACCCGGCTGATTGCATGCAACAAATGCTCGGACAAGTCAGGCGCCACAGAGTCAATATGATGGCAATATTTGCACTGTCATCGTAACTACCATGGTGTTGGAGGGATGGCAGCGGAAGCTTGACCCAGAGTACGACGCGATGCAAACGTTGCAAAAATTGCTTTTCAAAGCCGATTGGGTGGATTCTCTCTTCTATACAATCGAAGGAGTCATGGCCCCATAAGGTGCCCCCCTCATATTCTTCAGTTATTATATAAAACAATAAATCTGAAACATTTACTGCTCAGATAGTTACAATGTATTCGAAAATACATTCATGTGAAAATGCACAGGCGAAAAACCCGATGAGTGAGAATTGAAGAAACGTACCTAGAATTTGCTTTTTCGATCTTTCTAATGCTTCGAAGAATTAAAAGCATTATTGAATGCAGCGTTGGTGAAACGACATTTGTAGATGATGAAACCATCGGAAAAGAACGAACGAAGATATCATCAACGCTGCACTCAATGAGGTTTTTTAAGCTCTAACCTCAAATCTTCTCCTCCCACCTTTTTTCCCTACCGGTTTCAGTTCCCGAAAATGTTGGTTTATGATTTGTTAATATAGGGCTATCACAAAGTACACATCAGGTTGTAATAACATTGTACTATTTTTGCTTCTTATAGTTAAAAGTTAAAACACAGCTTCACTGGTTGTACTGAAATTGTGTGTGTAGTACGCACCACTTGACATTTTTTCTGTATATTGTAAATTCAACTCTTGTCACGTGGAAGC | |||||||||
gi|238431892|gb|GR163638.1|GR163638 CBPF10050.b1 CBPF Mimulus guttatus IM62 roots, seedlings, fruits, callus (H) Mimulus guttatu ATTGAGTGCAGCGTTGATGA EST sequence (targeted fragment marked with yellow): TGGAAATCCGACACCGAAGCTGTCATAAACGAGGCTCTAAAATCCGGCCTCGCTCCCAATGTTTCCGATGCTCATACGATCAACGGTCATCCTGGACCGATCTCGAATTGTCCCTCCACAGGTGGTTTCTCGTTAAACGTTTCACCGGGGAAAAACTACATGCTACGACTAATCAACGCTGCACTCAATGAAGAACTCTTTTTCAAGATCGCCGGCCACAAACTGACGGTGGTGGAAGTGGACGCCACCTACGTAAAGCCCTTCAAAACGGACACGATCCTGATCGCACCGGGGCAAACCACCAACGTGATCGTAACGGCGGATCAGGGCGCCGGCAAGTACATGGTGGCGGCGTCGCCGTTCATGGACACTCCGGTGGTCGCCGTCGACAACAAAACCGCCACCGCCACGATCCACTACTCCGGCACGCTCGCCAACTCCCCGACATCCTTCACCGCCACGCCCCCGCAGAACGCCACCCCAGTCGCCAACAATTTCGTGAACTCGCTCCGAAGTTTGAACTCGAAGAAATATCCGGCGAAAGTTCCGATGAAAATCGACCACAGCCTCCTCTTCACCGTCGGACTCGGAATCAACCGCTGCCCGAGCTGCAAAGCCGGAAACGGGAGCAGGGTGGTGGCGAGCGTGAACAACGTGACTTTCGTGATGCCGACGGTTGCTCTACTCCAAGCGCACGTGCAAAATATCAAGGGGGTTTTCACCTCCGATTTTCCCGGAAACCCTCCTCACGCGTTTAACTACACG | |||||||||
gi|238378935|gb|GR126525.1|GR126525 CCBX12734.b1 CCBX Mimulus guttatus IM62 floral buds (N) Mimulus guttatus cDNA clone CCBX1273 ATTGAGTGCAGCGTTGATGA EST sequence (targeted fragment marked with yellow): GAAAAGAAATGGATTTGCGGGTTCGGGTTTTGATCCTCGCAGCATGTTTGCTTCCGTGTTTTGTCGAATGCGAAGTTCGGCGCTACCAATTTAACGTTGTGATGAAAAACACCACCCGTGTGTGCTCGACCAAATCAATCGTCACGGTCAACGGAAAATTCCCGGGCCCCACTATCTACGCTAGAGAAGACGATACAGTCCTCATCCGGGTCATCAATCGGGTCAAATACAACGTCTCGATCCATTGGCATGGTGTTAGACAACTCCGAACCGGGTGGTCAGATGGGCCGGCATATATAACGCAGTGCCCCATACAACCCGGACACAGCTACGTGTACAATTTCACTATCACTGGGCAAAGGGGCACACTCTTCTGGCACGCGCACATCCTATGGTTGAGATCCACCGTCCACGGTGCCCTCGTCATCTTACCTAAGCTCGGCGTCCCCTATCCTTTTCCTAAACCCGACCACGAATCGGTCGTCGTTTTAGGTGAATGGTGGAAATCCGACACCGAAGCTGTCATAAACGAGGCTCTAAAATCCGGCCTCGCTCCCAATGTTTCCGATGCTCATACGATCAACGGTCATCCTGGACCGACCTCGAATTGTCCCTCCACAGGTGGTTTCTCGTTAAACGTTTCACCGGGGAAAAACTACATGCTACGACTAATCAACGCTGCACTCAATGAAGAACTCTTTTCAAGATCGCC | |||||||||
gi|238375422|gb|GR129295.1|GR129295 CCBX14297.b1 CCBX Mimulus guttatus IM62 floral buds (N) Mimulus guttatus cDNA clone CCBX1429 ATTGAGTGCAGCGTTGATGA EST sequence (targeted fragment marked with yellow): AACGAGAAGAAAAATGGTGTTTGTCAAGGGACCAGGCCTTTACCCCGACATTGGCAAGAGAGCTAGAGATCTTCTCTACAAGGATTATCAGGGTGACCAGAAGTTTACTCTCACTACGTACACTTCAAATGGCGTGGCAATTACTTTGTCTGGAACTCAGAAAGGCGATCTGTTTTTGGCTGATGTCAGCACGCAGATGAAGAACAAGAACATCACAACTGACGTCAAAGTCGATACCAACTCTAATGTGTACACAACCTTCACTGTTGACGAGCCTGCTCCTGGAGTGAAGGCTATCTTTAGCTTTGTTGCTCCTGACCAAAAGTCCGGAAAGGTGGAACTTCAACATTTCCACGAGTATTCTGGAATCAGTACAAGCCTTGGTCTCACTGCAAAGCCCATCGTCAACTTCTCTGGTGTTGCGGGCAATCACACCTTCGCTTTCGGTACTGATGTGTCATTCGACACCGAAACTGGAAATTTTATCAAATCAACGCTGCACTCAGTTTTACCACCGCTGACCTCGTTGCTTCCTTGGGACTGAGTGATGAGGGCGAAACAGTCACTGCTTCCTACTTCCACACGGTAAGCCCGTTGACCAATACTGCAGTTGGAGCATAGATGGTCCACAGCTCTTC | |||||||||
gi|238118100|gb|GO994772.1|GO994772 CCIG12073.g1 CCIG Mimulus guttatus DUN10 floral buds (H) Mimulus guttatus cDNA clone CCIG120 ATTGAGTGCAGCGTTGATGA EST sequence (targeted fragment marked with yellow): GGAACTTGGTGGAAGCAGGAAGGTTAGAAAAGGTTTCAGTCCTGTGACCACAAGTGAATTAATAGTATTGCCATCATGCTGAGGTCCGTTGCGATGCGTCTGCACGGCGCTGTCCGAAGTGGAGTACTCCAGACTGCCGTCAGATCCCCAGCAGCTATCCAACAGCGACTTTCTCACGGCAAGCCTGAACTGTCTGAAGAAGAGTTCGATCAAAAGTACGTCGACTTCTTCAGCCGTCCCAACATTGACGGATGGGAAATCCGCACTGCAATGAATGACTTGGCCCGAATGGACCTTATTCCTGAGCCCAAGATCATCGTCGCTGCTCTCAAGGCATGCCGTCGTCTGAACGACTATGCCGTTGCAGTAAGGTTCCTCGAGTCCGTCAAGGACAAGTGCGGGACCAAAGCCAACGAAATCTACCCCTGGATCATTCAAGAGATTAGGCCGACCCTTGACGAGCTTGGCATCAGCACTCCAGAGGAGCTAGGTTACGACAAACCTGAGCTTGCCATCCAGGATGTAGAGGACATGCATTAGATTAGCTTGTTGCGAACATGTAGCAAATTCATTCAGTCAACATCGACTGTTCTTTCTTTTAAATTTTAACTTCCAACCTTCTTGCAAGATGATTTCTCTGGTCTGTTATGATTGTAAATAATGTGGATTAAAAGTGTTAAGGAAGTGT | |||||||||
gi|238385444|gb|GR132995.1|GR132995 CCBX16380.b1 CCBX Mimulus guttatus IM62 floral buds (N) Mimulus guttatus cDNA clone CCBX1638 ATTGAGTGCAGCGTTGATGA EST sequence (targeted fragment marked with yellow): TCCATAAGCCTGCCATCAAGGCTGCACCCAATCAACTCCACAGGATTTGAATCTGAGTTACAAAAGCTCAGATCTTCAAAAACTGCTCCTTTTTCCTCGGAAGCAATCCGACGTGGCATCCTGGGATTGGCTGAGCTCTACAACTCCATTGAAGAACAACAGTCACTCTCTTCCAACAAGCATCATCGCAATCAAGCAATCGAAGAATCTCTGGAGGAATCTATCGAGATTCTAGATTCTTGCAGCAGCATCAGGGAATTAGTTCAGATGATCAAGGAAAACACACAAGCCCTCCAGTCAGCACTCCGCCGCAAGGGCGGCGTGGACCCCACCATACAAAACGACGTCGCTTCGTATTTTTCGTTCAGAAAAAAAGACGAACAAATCCATAGCCAAAGCTCTCAGAACACTCAAGAATAATGCATCTTCATCAAAAAAATATTCATGATGACGATTTCACTAGGGTTATGAGGGAGGTGAATGACGTCACCATTGCAATCTTCAAGTCTGCTCTGGTTCACCTGTCGTCTTCTCCGGCGGTTAAATCCGGCGGCGGGAATCTGGTCTCGAGGCTGATGGTGGCGGCGAAATCTGCGGATTGTAGTGTTATTACCGAGGTGGGGTGTGTGGATATTGCACTGAAAAACCTTCAAGTGTGTGTAAAGAATGGAGATTCGAAGATTTTCGATGCGCAGACGGTGGCGCGAAGGAGCTTGCAGAATCTTGATTCTGTGGT | |||||||||
gi|238176431|gb|GR048567.1|GR048567 CCIC24090.b1 CCIC Mimulus guttatus IM62 roots (H) Mimulus guttatus cDNA clone CCIC24090 5', ATTGAGTGCAGCGTTGATGA EST sequence (targeted fragment marked with yellow): CAAGATTTCAAAAAAAATAATAATAATAAAAAAATAAAAGAAAATGGCATTTTCGCAAATTCAACTCAGATCCATAAGCCTGCCATCAAGGCTGCACCCAATCAACTCCACAGGATTTGAATCTGAGTTACAAAAGCTCAGATCTTCAAAAACTGCTCCTTTTTCCTCGGAAGCAATCCAACGTGGCATCCTGGGATTGGCTGAGCTCTACAACTCCATTGAAGAACAACAGTCACTCTCTTCCAACAAGCATCATCGCAATCAAGCAATCGAAGAATCTCTGGAGGAATCTATCGAGATTCTAGATTCTTGCAGCAGCATCAGGGAATTAGTTCAGATGATCAAGGAAAACACACAAGCCCTCCAGTCAGCACTCCGCCGCAAGGGCGGCGTGGACCCCACCATACAAAACGACGTCGCTTCGTATTTTTCGTTCAGAAAAAAGACGAACAAATCCATAGCCAAAGCTCTCAGAACACTCAAGAATAATGCATCTTCATCAAAAAATATTCATGATGACGATTCACTAGGGTTATGAGGGAGGTGAATGACGTCACCATTGCAATCTTCAAGTCTGCTCTGGTTCACCTGTCGTCTTCTCCGGCGGTTAAATCCGGCGGCTGGAATCTGGTCTCGAGGCTGATGGTGGCGGCGAAATCTGCGGATTGTAGTGTTATTACCGAGGTGGGGTGTGTGGATATTGCACTGAAAAACCTTCAAGTGTGTGTAAAGAATGGAGATTCGAAGATTTTCGATGCGCAGACG | |||||||||
gi|238362307|gb|GR113596.1|GR113596 CCBG5982.g1 CCBG Mimulus guttatus IM62 floral buds (H+L) Mimulus guttatus cDNA clone CCBG598 ATTGAGTGCAGCGTTGATGA EST sequence (targeted fragment marked with yellow): AGAGATTCTAACAACGGGGTATCGTAGATTTGAATTCCCCAGGTTTTAGAGACAATTTGCTCCCATTCATTTTTCATCAAGCTGCACTGAATTTAGTTGTGCTTGTTTGCGGGGAACATTTTTCGGTTTCGGTTTGTATTGAGACATACACCCATAAATAGGAAATGGGAAGTCTTGGGTAAACGAAGTCTATAAACGAATTATATTTTCATGTAATAATAAACAATACAGCTACCCTTCTATAAATTAATCCAGTTGGGACTCCGAAAATTTTTTTT | |||||||||
gi|238209430|gb|GR081345.1|GR081345 CCIF15189.g1 CCIF Mimulus guttatus IM62 leaves (H) Mimulus guttatus cDNA clone CCIF15189 3', ATTGAGTGCAGCGTTGATGA EST sequence (targeted fragment marked with yellow): ATCATCTAGGTACTCTATTTGGCTCGATAGCAAGCTTCGACTAAATGCTGATCCAATGAAGATAATCGAATACTTTTTGTGGCGAAAGGGTTCAGAATATGCTATTTCGAATCATTATATTCGCCACTGCGTGTGGGATGAAATACTCCAAAATAAAAGGCTAAATAAGTACAATCACTCTGCTTTAGACGAACAGTTTTATTTCTATCAATCTGATGGTCTCACAAAGTACGACTCGTCAGACCCGAAAATCCCTCTTCCAAGCTTTGTACCAGAAGGATCGTTCATTGTGAGGGCGCATACGCCAATGTCGAATTTATTTTCGTGCCTTTGGTTTAATGAAGTTGATCGATTTACGTCACGTGATCAGCTGAGCTTTGCGTATACTTACTTGAAGCTGAAGAGACTTAATCCCGACAAACGCTTCCATTTGAATATGTTCAAGGACTGCGAGCGAAGGGCAATCACAAAGCTGTTTCGTCATAGAACCGACACGTAGAGATTCTAACAACGGGGTATCGTAGATTTGAATTCGACAGGTTTTAGAGACAATTTGCTGCCATTCATTCTTCATCAAGCTGCACTGAATTTAGTTGTGCTTGTTTGCGGGGAACATTTTTCGGTTTCGGTTTGTATTGAGACATACAGCCATAAATAGGAAATGGGAAGTCTTGTGTAAACGAAGTCTATAAACGAATTATATTTTCATGTAATAATAAACAATACAGCTACACTTCTATAAATTAATACAGTTGAGACT | |||||||||
gi|238378883|gb|GR126473.1|GR126473 CCBX12704.b1 CCBX Mimulus guttatus IM62 floral buds (N) Mimulus guttatus cDNA clone CCBX1270 ATTGAGTGCAGCGTTGATGA EST sequence (targeted fragment marked with yellow): ACACTTCATAATTTTCTCAACTCGAAGAAAGTTTTAGTTTAATGGCTTTTTATTTTTATTTTAATTGTTTGACAAAATGCACGCAAGCGCAGATTGATGAAAATGTAGCGAGAGAAATTATAAACCACCGATCGCTTCGACATCCGAATATAATTCGTTTCAAAGAGGTTGTATTGACACCAACACATCTGCTAATTGTGATGGAGTATGCATCCGGTGGCGAACTATTCGATCGAATCTGCAGTGCCGGTAGATTTAGTGAAGACGAGGCGAGGTACTTCTTTCAGCAGTTGATTTCTGGAGTCTGCTACTGCCACTCCATGAACATATGCCATAGAGATTTGAAATTGGAAAACACGCTTTTAGATGGCAGCCCTGCACCCCGCCTTAAAATCTGCGATTTTGGTTATTCCAAGTCGTCGGTGCTGCACTCGAGACCCAAATCCACCGTCGGAACTCCGGCTTACATTGCACCGGAAGTTCTCTCTCGCCGTGAATACGACGGCAAGTTGGCAGATGTGTGGTCGTGTGGAGTGACTCTATATGTAATGCTGGTGGGAGCTTACCCATTTGAAGACCCAACCGACCCAAAGAATTTCAGAAAAACTATTTCAAGAATAATGGGTATTCAGTACAAAATCCCAGACTATGTTCACATCTCCCAGGAATGCAAGCACCTACTCTCCCGTATCTTCGTCACGAATCCCTCAAGGAGAATAAATATAAAGGAGATCAAAAGCCATGCATGGTTCATGAAGAACTTGCCGAGAGAACTCGCAGAAACTAACCAAGCCACTTGTACTACAAGAAAAGATAACCCGAGCTTTTCAC | |||||||||
gi|238391289|gb|GR145774.1|GR145774 CCBX23783.b1 CCBX Mimulus guttatus IM62 floral buds (N) Mimulus guttatus cDNA clone CCBX2378 ATTGAGTGCAGCGTTGATGA EST sequence (targeted fragment marked with yellow): CAGGTCCAACTATTTACGCTAGAGAAGACGATACAGTCCTTGTTAAGGTCGTCAACCATGTCAACTACAATCTTTCCATCCACTGGCATGGAATAAGGCAACTTCGAACAGGATGGGCAGATGGACCAGCATATATAACACAATGCCCTATTCAGCCAGGTCAAAATTACGTCTACAATTTCACCATCACAGGTCAAAGGGGCACACTCCTCTGGCACGCGCATATCCTGTGGCTTAGGTCCACTGTACACGGTGCCATCGTCATCTTGCCTAAGCTTGGTGTACCTTATCCTTTTCCCAAACCCAACCACGAAAGAGTTATCATCCTAGCTGAGTGGTGGAAATCAGACACTGAAGCTGTGATAAACGAGGCTTTGACATCAGGCCTGGCGCCAAATGTCTCCGATGCCCACACAATCAACGGTCACCCTGGGCCTGTCACCAATTGTCCTTCCTCAACTGCAGATGGATTCACGTTGAAAGTCAAAGCCGGAAAAACGTACCTCCTCCGTCTGATCAACGCTGCACTCAACGAAGAACTCTTCTTCAAAATCGCCGGCCACAATTTGACCGTCGTCGACGTGGACGCCACCTACGTAAAGCCCTTCAAAACCGGCACGATCGTGATCGCCCCGGGGCAAACAACCACCGCAATCCTGACCGCCGATCGGAACACCGGCAAGTACATCGTGGCGGCGTCTACTTTCATGGACACCCCCCAAGGGGTGGC | |||||||||