| mature miRNA: CCATGTTATATGATTCTTCAT species: Mimulus guttatus database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|238429318|gb|GR166635.1|GR166635 CBPF11855.g1 CBPF Mimulus guttatus IM62 roots, seedlings, fruits, callus (H) Mimulus guttatu CCATGTTATATGATTCTTCAT EST sequence (targeted fragment marked with yellow): CTGGATCACTTGATTGCCATATACGTTGAGAGGAGTTATATAATATGGAGGCTACCTGATCTGCACAAGTTTTTATATGAGTCGGCAGTTTTGGTGATTGAGAATCTGGAGAAGCATGCAAGTGATGTCAAGGACTGGGATTGCGTAAGGAAAGAAGCTTTCTCATCAGACAAGAATGAGTACTCTCATTTGTTGGTGTCGGATTTCTCCGATTCCATGCCAACAGTGCCACCTGAAAACTTGCAAGAGTTTATGGTTGGTGGTGGTGGGGTTGAGCACCATCAACATATGCCTGAAAATAATAATAATATGCCCATGCCGCGTGACGTTTCGAACCGGAATGCGTTAGCTGTTCTGTTCGAGTCTATGTTACCTTGGATTAACTATGGAAGCAGAGAGGAAGAGGAAGATGATCTCCCCGACCAAGCCAACCAAGATTAGATTCTTAAATATTGATTCAATCCAAGTTTTCTGTTTTTTATTTGAGACCTAGAGGTTTGCGTGGCACATGAATTGCTCTAATTAATAGGTTGCCAAAGTCCTGTTTAAGACATTGAAAGAATAATAATGTTTGGATCTTTTTTAATGTAATAGCTACTGTGAAATCATCGTCAT | |||||||||
gi|238427360|gb|GR160185.1|GR160185 CBPF7557.b1 CBPF Mimulus guttatus IM62 roots, seedlings, fruits, callus (H) Mimulus guttatus CCATGTTATATGATTCTTCAT EST sequence (targeted fragment marked with yellow): ATATGCCCAAGCTCAGAGGGCTTTTGAAAGTGCCAAGGCAATGCATGATCTTAATGGTATTGCAAGCATTCTTTTGAACCATCCCTATCACATAGACTCGCTGATAACATTAGCGGACTATTTCAAATTATCGGGCGAACACGAAATGTCAGCAGATGCTACTGCAAAGTGTCTGTATGCTCTGGAATGTGCATGGCATCCACTGTTCACTCCATCACACAAGTGCCAATTAAAGTACATCCATGACACCAACAGGCCATTATTCTCATCACTTTTTACGCACATGAAAAACATGGACAGGCGTGGTTGCCACAGATCTGCCCTTGAAATTTGTAAGCTGTTGCTCTCCTTAGATTCAGATGATCCAATGGGTGCTATTTTCTGTATTGACTACTACTCTTTGAGAGCTGAGGAGTATGCTTGGTTAGAACAGTTTGCAGAAGAATATAGCTGTGACAATTCCCTGTGGCTATTTCCTAATATTTCTTATTCACTGGCGGTGTGCCGGTTTTACCTTGAACGTGATGAACAAGTTTTAATAAACAAGAAAGAAAAGGATACAGGGAAAGCTGATTCTGTTGATCTGATGAAGCAGGCTTTGATGCTTCACCCATCAGTATTGAGAAAATTGGTAGCAAAGGTACCTCTGANAGATCGGATGTGGAACAATGTAGTANAGCATAGTCTGTTTAGGGGTGAGGAAAGTGGAAGCCCATCTCTGGATCACTTGATTGCCATATACGTTGAGAGGAGTTATATAATATGGAGGCTACCTGATCTGC | |||||||||
gi|77489996|gb|DV208146.1|DV208146 0089P0106Z_G01_T7 Mimulus guttatus library 2 Mimulus guttatus cDNA clone 0089P0106Z_G01 5', m CCATGTTATATGATTCTTCAT EST sequence (targeted fragment marked with yellow): GAGGAAAACAAATTGGAACAAAAGAAGGTGGAGGATCGAGTGCTGGAAATTACATATAATTATTAACACTGAAAGACAATTACATATGATAATATGAAGTAGAGCATCATATGAAGTAGTTGGATCAAGTGCTGCAAATTATATATAAATATTAAAACAGAAACATAATTGCATGTGATAATATGAAGTTGTTGGATCGAGTGTTGAAAATCACATTGTTGTGGGTGATTATATAACATGGATTATTACGTGATTTTGGAAATATTTTAAAAAATCAAAATTTGAATTTTAAAATGAGCGGCAATCTAAAATTTCGAAATTATTGATTATATAATTAAATGATTTGATTTAATTTGAATTGATTTGAAAATAGTTAATAATGGCAGTTAATAAATGCATATTACGTTAATTTGGTATTAATTAATTTTAATTGACAACTAATTGAGCCACCTAATTCGAGAAAAGTTAAGTCACAATAAATGACATAATTTTTCTTATTTTATGATGCGTATAATATGAGAAAAAATACAGCTATGAGAAAATGTAAAAATTGTCCGTATTGATATACACATAATCC | |||||||||
gi|238357675|gb|GR109504.1|GR109504 CCBG3794.g1 CCBG Mimulus guttatus IM62 floral buds (H+L) Mimulus guttatus cDNA clone CCBG379 CCATGTTATATGATTCTTCAT EST sequence (targeted fragment marked with yellow): AAAGCTGATTCTGTTGATCTGATGAAGCAGGCTTTGATGCTTCACCCATCAGTATGAGAAAATTGGTAGCAAAGGTACCTCTGAAAGATCGGATGTGGAACAATGTAGTAAAGCATAGTCTGTTTAGGGTGAGGAAAGTGGAAGCCCATCTCTGGATCACTTGATTGCCATATACGTTGAGAGGAGTTATATAATATGGAGGCTACTGATCTGCACAAGTTTTTATATGAGTCGGCAGTTTTGGTGATTGAGAATCTGGAGAAGCATGCAAGTGATGTCAAGGACTGGGATTGCGTAAGGAAAGAAGCTTTCTCATCAGACAAGAATGAGTACTCTCATTTGTTGGTGTCGGATTTCTCCGATTCCATGCCAACAGTGCCACCTGAAAACTTGCAAGAGTTTATGGTTGGTGGTGGTGGGGTTGAGCACCATCAACATATGCCTGAAAATAATAATAATATGCCCATGCCGCGTGACGTTTCGAACCGGAATGCGTTAGCTGTTCTGTTCGAGTCTATGTTACCTTGGATTAACTATGGAAGCAGAGAGGAAGAGGAAGATGATCTCCCCGACCAAGCCAACCAAGATTAGATTCTTAAATATTGATTCAATCCAAGTTTTCTGTTTTTTATTTGAGACCTAGAGGTTTGCGTGGCACATGAATTGCTCTAATTAATAGGTTGCCAAAGTCCTGTTTAAGACATTGAAAGAATAATAATGTTTGGATCTTTTTTAATGTAATAGCTACTGTGAAATCATCGTCATACTTG | |||||||||
gi|238427361|gb|GR160186.1|GR160186 CBPF7557.g1 CBPF Mimulus guttatus IM62 roots, seedlings, fruits, callus (H) Mimulus guttatus CCATGTTATATGATTCTTCAT EST sequence (targeted fragment marked with yellow): TGGAACAATGTAGTAAAGCATAGTCTGTTTAGGGGTGAGGAAAGTGGAAGCCCATCTCTGGATCACTTGATTGCCATATACGTTGAGAGGAGTTATATAATATGGAGGCTACCTGATCTGCACAAGTTTTTATATGAGTCGGCAGTTTTGGTGATTGAGAATCTGGAGAAGCATGCAAGTGATGTCAAGGACTGGGATTGCGTAAGGAAAGAAGCTTTCTCATCAGACAAGAATGAGTACTCTCATTTGTTGGTGTCGGATTTCTCCGATTCCATGCCAACAGTGCCACCTGAAAACTTGCAAGAGTTTATGGTTGGTGGTGGTGGGGTTGAGCACCATCAACATATGCCTGAAAATAATAATAATATGCCCATGCCGCGTGACGTTTCGAACCGGAATGCGTTAGCTGTTCTGTTCGAGTCTATGTTACCTTGGATTAACTATGGAAGCAGAGAGGAAGAGGAAGATGATCTCCCCGACCAAGCCAACCAAGATTAGATTCTTAAATATTGATTCAATCCAAGTTTTCTGTTTTTTATTTGAGACCTAGAGGTTTGCGTGGCACATGAATTGCTCTAATTAATAGGTTGCCAAAGTCCTGTTTAAGACATTGAAAGAATAATAATGTTTGGATCTTTTTTAATGTAATAGCTACTGTGAAATCATCGTCATACTTGAAATTAATTTTACACTCATTATCAATTTTAAATGGAACTTATTTACATC | |||||||||
gi|238390435|gb|GR144065.1|GR144065 CCBX22813.g1 CCBX Mimulus guttatus IM62 floral buds (N) Mimulus guttatus cDNA clone CCBX2281 CCATGTTATATGATTCTTCAT EST sequence (targeted fragment marked with yellow): GTGGCAGTTACAGTATCAGTGAGTTTTTCAGCCATCCGTCTGGAATTGAAGCGTCGCTGAACACGAGGGCCTTGCAAAGTTGCCAATCCCTTGATTCCAATTTGTACAGGTGCGTTCTGCCACAGCTTCAACTTCTTAACTTTAGGGTTGCGCCGGTGTTGGACTTACAAGTAACTCCAAGTAGTGAAGACTGTCTAGTTGAGATGTTATCATGCAAGTTTGAGGGTTCTGAAGTGGTGGAGCGCCAGAACGAGCACTTTTCAGCTTCGATGAAGAATCATATAACATGGGAGACTATCGATACCGAACAATTCTTGAATGTTGACGTGAAGTTGAATCTCGTTCTTGAGATTTACACACAGCCGTTTGCGTTACTGCCCGTATTAGCAGTTGAGGGTCCAGGAAATATAATGACGCAAACCCTAGTGGACAAGCTGGTACCTTTGCTCGTACAGCAGCTTCTGCAAAATTACGAAGAATGGATTCTTCAACAACAAATTCTTATTTCGTGATAGCAAAAATCTTTCTTATTCTACTCGTCCCATGCAATGTGAAAACCTTATCGGTCATATGCGACATAATGCCGTTGAAGAGAGAGAAAATTTGGCGCGGACACAGATGGTCTTTTTTTTCCGATTTTTTTTTCGAAGAAGGAAACAGATAATCTCATGATGTATATATAGTTTTCGAAACCAACATATTGTACATTCATTTATACTACATAAGTTTATATG | |||||||||