| mature miRNA: TATTCGGTTCGGTTCGGTTTT species: Mimulus guttatus database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|238151510|gb|GR022536.1|GR022536 CCIC10158.g1 CCIC Mimulus guttatus IM62 roots (H) Mimulus guttatus cDNA clone CCIC10158 3', TATTCGGTTCGGTTCGGTTTT EST sequence (targeted fragment marked with yellow): GGAGTGGCTTACACAGAGGAAGAAACTAAAGCTATGGCAGCAGAGATTGAAGTGGTTGATGGTCCTAACGACGAAGGTGAGATGTTTAGTAGGCCAGGTAAGCTAAGCGACCGTTTTCCTCAGCCTTATGCGAACGAACAAGCTGCAAGGTTTGCAAATGGTGGGGCCTACCCTCCCCGATTTAAGTCTTATCACCAAGGCCCGTCATAATGGTCAGAATTATGTTTTTGCTCTTCTAACTGGGTATCGTGACCCTCCAGCTGGCGTCACGATTAGAGACGGGCTTCACTATAATCCGTACTTCCCTGGTGGAGCAATTGCCATGCCTAAAATGCTTAACGATGGCGCTATTGAGTATGAAGACGGTACCCCTGCCACTGAAGCACAGATGGGAAAAGATATTGTGTCATTTTTGTCTTGGGCTGCTGAACCAGAAATGGAAGAACGAAAGCTGATGGGATTTAAATGGATACTTGTATTGTTTCTTGCGCTTCTCCAAGCGGGATATTACAGACGGCTGAGATGGTCGGTTCTCAAATCGCGTAAGTTGGTTCTTGATGTAGTCAACTAAACTGAACCGAACCGAACCTCTGTATTTTTATTTTCTTTCCCCATGGGTTTGAGAAGAGACGAAAGATTGGTTAATAATATGCCCATTAGCATTT | |||||||||
gi|238364298|gb|GR115695.1|GR115695 CCBG7082.b1 CCBG Mimulus guttatus IM62 floral buds (H+L) Mimulus guttatus cDNA clone CCBG708 TATTCGGTTCGGTTCGGTTTT EST sequence (targeted fragment marked with yellow): CACATTGTTGAGAGTACAACAACACATATACAACTCATAAAGGAAAACAGACAACAGAATCGAACCGAACATTCGACAGGACAAGCGGACGAAGTTTACCTCAGCTAAATCGAAGAAATAGAAGGATTACTTCCATGATTTCCCCTTTCCAGATCATCGCCCAAAGTCTTGCAATCCAACCCACACCCACATTGCGGACAGATAAGAAAATTATCAATCCCAAATTCGGCAGATGCAATTCCGACAGAGAATTCAAGTCAACTTATCTTTGTAGATGGAACCACTGATTTGGGACTTGTACCTCAGCTGATACGATCCTTCCAGGGAGAAACTGCACGAACCGCTTAGGTAGGCGTTGAATTTGCCGGAAGACGGGTCGAGATCGTAGTGTGTTACGCCTATTGGGAGGATGCCGACGGGAAAATCGAATGATTGGATTACATCGTACGCCGTGAGAACGGCGGATCCGCCACCGGCGGCGGAGAGTACGAACAGACAGATGATTAAAGCGGTGGTGGTTTCGCAATTCGATACCATTCTGCCTCTTTTCCGATTCCCAATTGATTCGCCGGATTATAACAGAAAGAAAATTCGATGAATTTCACGCAATTTCCCCCCCAAAAAAGTAGAGATTGAACGGAACTAAATTCAGGTTTTTTGGGTGGAATTTGTTGACGGAGGAGAAATCGGAATTGAGTTGTGTAGGAGAACTACCAGGCAATTATGGTACAA | |||||||||
gi|238359900|gb|GR110034.1|GR110034 CCBG4081.g1 CCBG Mimulus guttatus IM62 floral buds (H+L) Mimulus guttatus cDNA clone CCBG408 TATTCGGTTCGGTTCGGTTTT EST sequence (targeted fragment marked with yellow): CACTTTCCGATATGGTGCAGAGGGGCTTGTGAAGGAGGAGGATTTGCACTCGTTTAACATTCCGATATACGCCCGTCTATACAAGAAATCAGTACGGCAATCGAGAGTGAAGGGTCCTTTCAATTTGGACAAGATGGAAGTTGTTTTTGGTTCCATTAGACGCCAACGAAGACGACAACAACTACGACAACATGGTTTCAAACAAAAACAACACGAGCGGTAAATTTGTGGCGAACTATGTTCGGGCTTTCGCGGAGCCCATGTTAGTTGCCCACTTTGGGAGCTCAATTAATGTTGATGTTGTCTTTGATGTTTATGCGAAAAAAACGGACGAGCATTTGTCCGTTGAGAGATCGTCGTATTTTACTCCGGTCATTTCCTTAACTAGGAAAACAATGACAGATTGAAGCGGTGTATGGTGTAGGGGTGTGCATGGGTCGGTTTGGTTCGGTTCGGTTTTAGCCAAAAACCGAACCGAACCGAATATATCGGTTTTTGTAAAATTAAAAACCGTGTATGTCGGTTTTTTATCGGTTCGGTTTCTTTCGGTTTCGGTTCGGTTTCGGTTTTTTTCGGTTCGGTTTCGGTTATTTTTCGGTTCAAGTGTCAATATATATTCAAGTTGTTGTACAAACAAAAAAATACAATTACAATTACTTTCACAACTTACTAATGC | |||||||||
gi|77488940|gb|DV207614.1|DV207614 0089P0098Z_E08_T7 Mimulus guttatus library 2 Mimulus guttatus cDNA clone 0089P0098Z_E08 3', m TATTCGGTTCGGTTCGGTTTT EST sequence (targeted fragment marked with yellow): ACATGTTCCAAATTTAACCGCGTTTTTTAGAACAGCGGGGATAGTGGCGCGAGGAAGTTCTCGAATCATCGAGGCGGGAAATAACTGTCACCAAAAACCAAAGACTNTCGGTCATAGATTAATACAGTTAATACGGTTATTTATGGATTTACCCTGAATTAAATCAAGAGAGGTTAATTCGTTATCGATCCCTATATATCATTTATACTAATTAATCAGCTAACAGAATACGAACGACTTTCTATTTCCGGTAACATTTGATCCAAGTTCCGGGAATACAATTCAGATATTAATAATTTAATAATTAGTAGTGATACGATATAAAAATCGAAAAAAATTATCGGAGGAGAAAATAGTGGGAACGAGAGTCGAGAGTAATTACCAGTCCGAAGGTGTGGCTGATATGCGATTTCGATAAAACCAAATCGAAATATGGCTTCCCCGAAAGATAACGAATTTCATCTTCGTCTAATTTAGCTGGTTCGGAATTCGAACCGAATCGAGTGTGTCGGATTTCTTCATTTTCCGGAGCATTTTCTGTTGTGCAGGCCTCCATTTTCACCGCGGCGAGTTGAGCAACTCGCTTGGAAGGAGTCACCATTTTTACCACTGTTAGTTGGGTTAATTTTCCTGCTTCTGCTGATAAATTAAACAAGGAAAATTGAAAATGGAAGAGTGGGGTAGGAAGAAAGCCCTGGTTTTGTTTGATGTTTGGTCACTC | |||||||||
gi|238355004|gb|GR106852.1|GR106852 CCBG2212.g1 CCBG Mimulus guttatus IM62 floral buds (H+L) Mimulus guttatus cDNA clone CCBG221 TATTCGGTTCGGTTCGGTTTT EST sequence (targeted fragment marked with yellow): ATTTAAAGGTGAAGGCACTGACATACTGGAGTTTATTTGCTCTGCATGGCTGATAGTATCGAGATTCGCAACGTATTTACGCGTGGGCATAATCGAATATCAGATTACCATTACATGGGTCCCGGTTTCAAGGAATTGGATGATGAACTGCAGACGTCGCTCTATGATTACTTAGAAACGAGGGGAGTAGATGATAAGTTGGCTGAATTTCTGCATCGGTATATGATAAACAAGGATAAAAACGAGTACCTTCGTTGGATGGAAAAGCTGAAATCTTTCATTGAAAAGAAATAGAGACAAAAAAAACGAGGTATCTTATTTTCCTTACTAACTTCGGCTCCCTTCAACTTTGAAATTCATTTGTCCTTTTTCATGGTATTCATGGAATGCAATCATTCGGTGTTCTGTCTTAGTGCTTATATGTTTGTAATGTAAGAATAACTTACAAACCCGAGTCGAACCGAAGAAAACATAGAATGAAAATTCTCCAAATATTTTTGCAGCCC | |||||||||
gi|238460466|gb|GR190953.1|GR190953 CCBF436.g1 CCBF Mimulus guttatus IM62 floral buds (L) Mimulus guttatus cDNA clone CCBF436 3' TATTCGGTTCGGTTCGGTTTT EST sequence (targeted fragment marked with yellow): TATCTTATCGAGATCTCGTTGGAGTGGCTTACACAGAGGAAGAAACTAAAGCTATGGCAGCAGAGATTGAAGTGGTTGATGGTCCTAACGACGAAGGTGAGATGTTTAGTAGGCCAGGTAAGCTAAGCGACCGTTTTCCTCAGCGTTATGCGAACGAACAAGCTGCAAGGTTTGCAAATGGTGGGGCCTACCCTCCCGATTTAAGTCTTATCACCAAGGCCCGTCATAATGGTCAGAATTATGTTTTTGCTCTTCTAACTGGGTATCGTGACCCTCCAGCTGGCGTCACGATTAGAGACGGGCTTCACTATAATCCGTACTTCCCTGGTGGAGCAATTGCCATGCCTAAAATGCTTAACGATGGCGCTATTGAGTATGAAGACGGTACCCCTGCCACTGAAGCACAGATGGGAAAAGATATTGTGTCATTTTTGTCTTGGGCTGCTGAACCAGAAATGGAAGAACGAAAGCTGATGGGATTTAAATGGATACTTGTATTGTCTCTTGCGCTTCTCCAAGCGGGATATTACAGACGGCTGAGATGGTCGGTTCTCAAATCGCGTAAGTTGGTTCTTGATGTAGTCAACTAAACTGAACCGAACCGAACCTCTGTATTTTTATTTTCTTTCGCCATGGGTTTGAGAAGAGACGAAAGATTGGTTAATAATATGCACATTAGCATTTCGTATTAGATTATGGAATGTAGGCATGTACATTTTCAGAGCCTGCTCTAGTAGCTTTGGTTGTCTTCCGAGGGGAAATAAAGTTGTACTCACATTGAACTGAATTTATGAATTTCGTTGATTTCGAT | |||||||||
gi|238360631|gb|GR108180.1|GR108180 CCBG2976.g1 CCBG Mimulus guttatus IM62 floral buds (H+L) Mimulus guttatus cDNA clone CCBG297 TATTCGGTTCGGTTCGGTTTT EST sequence (targeted fragment marked with yellow): TGTTGTAGGGGGTGCATGGGTCGGTTTTGGTTCGGTTCGGTTTTAGCCAAAAACCGAACCGAACCGAATATATCGGTTTTTGTAAAATTAAAAACCGTGTATGTCGGTTTTTTATCGGTTCGGTTTCTTTCGGTTTCGGTTCGGTTTCGGTTTTTTTCGGTTCGGTTTCGGTTATTTTTCGGTTCAAGTGTCAATATATATTCAAGTTGTTGTAC | |||||||||