miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse




mature miRNA: TATTCGGTTCGGTTCGGTTTT
species: Mimulus guttatus
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|238151510|gb|GR022536.1|GR022536 CCIC10158.g1 CCIC Mimulus guttatus IM62 roots (H) Mimulus guttatus cDNA clone CCIC10158 3',

TATTCGGTTCGGTTCGGTTTT
|||||||||||||.||||
CCAAGCCAAGCCAAGTCAAAT

EST sequence (targeted fragment marked with yellow):
GGAGTGGCTTACACAGAGGAAGAAACTAAAGCTATGGCAGCAGAGATTGAAGTGGTTGATGGTCCTAACGACGAAGGTGAGATGTTTAGTAGGCCAGGTAAGCTAAGCGACCGTTTTCCTCAGCCTTATGCGAACGAACAAGCTGCAAGGTTTGCAAATGGTGGGGCCTACCCTCCCCGATTTAAGTCTTATCACCAAGGCCCGTCATAATGGTCAGAATTATGTTTTTGCTCTTCTAACTGGGTATCGTGACCCTCCAGCTGGCGTCACGATTAGAGACGGGCTTCACTATAATCCGTACTTCCCTGGTGGAGCAATTGCCATGCCTAAAATGCTTAACGATGGCGCTATTGAGTATGAAGACGGTACCCCTGCCACTGAAGCACAGATGGGAAAAGATATTGTGTCATTTTTGTCTTGGGCTGCTGAACCAGAAATGGAAGAACGAAAGCTGATGGGATTTAAATGGATACTTGTATTGTTTCTTGCGCTTCTCCAAGCGGGATATTACAGACGGCTGAGATGGTCGGTTCTCAAATCGCGTAAGTTGGTTCTTGATGTAGTCAACTAAACTGAACCGAACCGAACCTCTGTATTTTTATTTTCTTTCCCCATGGGTTTGAGAAGAGACGAAAGATTGGTTAATAATATGCCCATTAGCATTT



gi|238364298|gb|GR115695.1|GR115695 CCBG7082.b1 CCBG Mimulus guttatus IM62 floral buds (H+L) Mimulus guttatus cDNA clone CCBG708

TATTCGGTTCGGTTCGGTTTT
| |||||||||.||| ||| |
ACAAGCCAAGCTAAGACAACA

EST sequence (targeted fragment marked with yellow):
CACATTGTTGAGAGTACAACAACACATATACAACTCATAAAGGAAAACAGACAACAGAATCGAACCGAACATTCGACAGGACAAGCGGACGAAGTTTACCTCAGCTAAATCGAAGAAATAGAAGGATTACTTCCATGATTTCCCCTTTCCAGATCATCGCCCAAAGTCTTGCAATCCAACCCACACCCACATTGCGGACAGATAAGAAAATTATCAATCCCAAATTCGGCAGATGCAATTCCGACAGAGAATTCAAGTCAACTTATCTTTGTAGATGGAACCACTGATTTGGGACTTGTACCTCAGCTGATACGATCCTTCCAGGGAGAAACTGCACGAACCGCTTAGGTAGGCGTTGAATTTGCCGGAAGACGGGTCGAGATCGTAGTGTGTTACGCCTATTGGGAGGATGCCGACGGGAAAATCGAATGATTGGATTACATCGTACGCCGTGAGAACGGCGGATCCGCCACCGGCGGCGGAGAGTACGAACAGACAGATGATTAAAGCGGTGGTGGTTTCGCAATTCGATACCATTCTGCCTCTTTTCCGATTCCCAATTGATTCGCCGGATTATAACAGAAAGAAAATTCGATGAATTTCACGCAATTTCCCCCCCAAAAAAGTAGAGATTGAACGGAACTAAATTCAGGTTTTTTGGGTGGAATTTGTTGACGGAGGAGAAATCGGAATTGAGTTGTGTAGGAGAACTACCAGGCAATTATGGTACAA



gi|238359900|gb|GR110034.1|GR110034 CCBG4081.g1 CCBG Mimulus guttatus IM62 floral buds (H+L) Mimulus guttatus cDNA clone CCBG408

TATTCGGTTCGGTTCGGTTTT
|||||||||||||||||||||
ATAAGCCAAGCCAAGCCAAAA

EST sequence (targeted fragment marked with yellow):
CACTTTCCGATATGGTGCAGAGGGGCTTGTGAAGGAGGAGGATTTGCACTCGTTTAACATTCCGATATACGCCCGTCTATACAAGAAATCAGTACGGCAATCGAGAGTGAAGGGTCCTTTCAATTTGGACAAGATGGAAGTTGTTTTTGGTTCCATTAGACGCCAACGAAGACGACAACAACTACGACAACATGGTTTCAAACAAAAACAACACGAGCGGTAAATTTGTGGCGAACTATGTTCGGGCTTTCGCGGAGCCCATGTTAGTTGCCCACTTTGGGAGCTCAATTAATGTTGATGTTGTCTTTGATGTTTATGCGAAAAAAACGGACGAGCATTTGTCCGTTGAGAGATCGTCGTATTTTACTCCGGTCATTTCCTTAACTAGGAAAACAATGACAGATTGAAGCGGTGTATGGTGTAGGGGTGTGCATGGGTCGGTTTGGTTCGGTTCGGTTTTAGCCAAAAACCGAACCGAACCGAATATATCGGTTTTTGTAAAATTAAAAACCGTGTATGTCGGTTTTTTATCGGTTCGGTTTCTTTCGGTTTCGGTTCGGTTTCGGTTTTTTTCGGTTCGGTTTCGGTTATTTTTCGGTTCAAGTGTCAATATATATTCAAGTTGTTGTACAAACAAAAAAATACAATTACAATTACTTTCACAACTTACTAATGC



gi|77488940|gb|DV207614.1|DV207614 0089P0098Z_E08_T7 Mimulus guttatus library 2 Mimulus guttatus cDNA clone 0089P0098Z_E08 3', m

TATTCGGTTCGGTTCGGTTTT
.|.|||.|||||||||. ||.
GTGAGCTAAGCCAAGCTTAAG

EST sequence (targeted fragment marked with yellow):
ACATGTTCCAAATTTAACCGCGTTTTTTAGAACAGCGGGGATAGTGGCGCGAGGAAGTTCTCGAATCATCGAGGCGGGAAATAACTGTCACCAAAAACCAAAGACTNTCGGTCATAGATTAATACAGTTAATACGGTTATTTATGGATTTACCCTGAATTAAATCAAGAGAGGTTAATTCGTTATCGATCCCTATATATCATTTATACTAATTAATCAGCTAACAGAATACGAACGACTTTCTATTTCCGGTAACATTTGATCCAAGTTCCGGGAATACAATTCAGATATTAATAATTTAATAATTAGTAGTGATACGATATAAAAATCGAAAAAAATTATCGGAGGAGAAAATAGTGGGAACGAGAGTCGAGAGTAATTACCAGTCCGAAGGTGTGGCTGATATGCGATTTCGATAAAACCAAATCGAAATATGGCTTCCCCGAAAGATAACGAATTTCATCTTCGTCTAATTTAGCTGGTTCGGAATTCGAACCGAATCGAGTGTGTCGGATTTCTTCATTTTCCGGAGCATTTTCTGTTGTGCAGGCCTCCATTTTCACCGCGGCGAGTTGAGCAACTCGCTTGGAAGGAGTCACCATTTTTACCACTGTTAGTTGGGTTAATTTTCCTGCTTCTGCTGATAAATTAAACAAGGAAAATTGAAAATGGAAGAGTGGGGTAGGAAGAAAGCCCTGGTTTTGTTTGATGTTTGGTCACTC



gi|238355004|gb|GR106852.1|GR106852 CCBG2212.g1 CCBG Mimulus guttatus IM62 floral buds (H+L) Mimulus guttatus cDNA clone CCBG221

TATTCGGTTCGGTTCGGTTTT
| |||||||||..|||| |||
AGAAGCCAAGCTGAGCCCAAA

EST sequence (targeted fragment marked with yellow):
ATTTAAAGGTGAAGGCACTGACATACTGGAGTTTATTTGCTCTGCATGGCTGATAGTATCGAGATTCGCAACGTATTTACGCGTGGGCATAATCGAATATCAGATTACCATTACATGGGTCCCGGTTTCAAGGAATTGGATGATGAACTGCAGACGTCGCTCTATGATTACTTAGAAACGAGGGGAGTAGATGATAAGTTGGCTGAATTTCTGCATCGGTATATGATAAACAAGGATAAAAACGAGTACCTTCGTTGGATGGAAAAGCTGAAATCTTTCATTGAAAAGAAATAGAGACAAAAAAAACGAGGTATCTTATTTTCCTTACTAACTTCGGCTCCCTTCAACTTTGAAATTCATTTGTCCTTTTTCATGGTATTCATGGAATGCAATCATTCGGTGTTCTGTCTTAGTGCTTATATGTTTGTAATGTAAGAATAACTTACAAACCCGAGTCGAACCGAAGAAAACATAGAATGAAAATTCTCCAAATATTTTTGCAGCCC



gi|238460466|gb|GR190953.1|GR190953 CCBF436.g1 CCBF Mimulus guttatus IM62 floral buds (L) Mimulus guttatus cDNA clone CCBF436 3'

TATTCGGTTCGGTTCGGTTTT
|||||||||||||.||||
CCAAGCCAAGCCAAGTCAAAT

EST sequence (targeted fragment marked with yellow):
TATCTTATCGAGATCTCGTTGGAGTGGCTTACACAGAGGAAGAAACTAAAGCTATGGCAGCAGAGATTGAAGTGGTTGATGGTCCTAACGACGAAGGTGAGATGTTTAGTAGGCCAGGTAAGCTAAGCGACCGTTTTCCTCAGCGTTATGCGAACGAACAAGCTGCAAGGTTTGCAAATGGTGGGGCCTACCCTCCCGATTTAAGTCTTATCACCAAGGCCCGTCATAATGGTCAGAATTATGTTTTTGCTCTTCTAACTGGGTATCGTGACCCTCCAGCTGGCGTCACGATTAGAGACGGGCTTCACTATAATCCGTACTTCCCTGGTGGAGCAATTGCCATGCCTAAAATGCTTAACGATGGCGCTATTGAGTATGAAGACGGTACCCCTGCCACTGAAGCACAGATGGGAAAAGATATTGTGTCATTTTTGTCTTGGGCTGCTGAACCAGAAATGGAAGAACGAAAGCTGATGGGATTTAAATGGATACTTGTATTGTCTCTTGCGCTTCTCCAAGCGGGATATTACAGACGGCTGAGATGGTCGGTTCTCAAATCGCGTAAGTTGGTTCTTGATGTAGTCAACTAAACTGAACCGAACCGAACCTCTGTATTTTTATTTTCTTTCGCCATGGGTTTGAGAAGAGACGAAAGATTGGTTAATAATATGCACATTAGCATTTCGTATTAGATTATGGAATGTAGGCATGTACATTTTCAGAGCCTGCTCTAGTAGCTTTGGTTGTCTTCCGAGGGGAAATAAAGTTGTACTCACATTGAACTGAATTTATGAATTTCGTTGATTTCGAT



gi|238360631|gb|GR108180.1|GR108180 CCBG2976.g1 CCBG Mimulus guttatus IM62 floral buds (H+L) Mimulus guttatus cDNA clone CCBG297

TATTCGGTTCGGTTCGGTTTT
|||||||||||||||||||||
ATAAGCCAAGCCAAGCCAAAA

EST sequence (targeted fragment marked with yellow):
TGTTGTAGGGGGTGCATGGGTCGGTTTTGGTTCGGTTCGGTTTTAGCCAAAAACCGAACCGAACCGAATATATCGGTTTTTGTAAAATTAAAAACCGTGTATGTCGGTTTTTTATCGGTTCGGTTTCTTTCGGTTTCGGTTCGGTTTCGGTTTTTTTCGGTTCGGTTTCGGTTATTTTTCGGTTCAAGTGTCAATATATATTCAAGTTGTTGTAC