| mature miRNA: TCGTTGAGTGCCGCGTTGATG species: Mimulus guttatus database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|238378935|gb|GR126525.1|GR126525 CCBX12734.b1 CCBX Mimulus guttatus IM62 floral buds (N) Mimulus guttatus cDNA clone CCBX1273 TCGTTGAGTGCCGCGTTGATG EST sequence (targeted fragment marked with yellow): GAAAAGAAATGGATTTGCGGGTTCGGGTTTTGATCCTCGCAGCATGTTTGCTTCCGTGTTTTGTCGAATGCGAAGTTCGGCGCTACCAATTTAACGTTGTGATGAAAAACACCACCCGTGTGTGCTCGACCAAATCAATCGTCACGGTCAACGGAAAATTCCCGGGCCCCACTATCTACGCTAGAGAAGACGATACAGTCCTCATCCGGGTCATCAATCGGGTCAAATACAACGTCTCGATCCATTGGCATGGTGTTAGACAACTCCGAACCGGGTGGTCAGATGGGCCGGCATATATAACGCAGTGCCCCATACAACCCGGACACAGCTACGTGTACAATTTCACTATCACTGGGCAAAGGGGCACACTCTTCTGGCACGCGCACATCCTATGGTTGAGATCCACCGTCCACGGTGCCCTCGTCATCTTACCTAAGCTCGGCGTCCCCTATCCTTTTCCTAAACCCGACCACGAATCGGTCGTCGTTTTAGGTGAATGGTGGAAATCCGACACCGAAGCTGTCATAAACGAGGCTCTAAAATCCGGCCTCGCTCCCAATGTTTCCGATGCTCATACGATCAACGGTCATCCTGGACCGACCTCGAATTGTCCCTCCACAGGTGGTTTCTCGTTAAACGTTTCACCGGGGAAAAACTACATGCTACGACTAATCAACGCTGCACTCAATGAAGAACTCTTTTCAAGATCGCC | |||||||||
gi|238391289|gb|GR145774.1|GR145774 CCBX23783.b1 CCBX Mimulus guttatus IM62 floral buds (N) Mimulus guttatus cDNA clone CCBX2378 TCGTTGAGTGCCGCGTTGATG EST sequence (targeted fragment marked with yellow): CAGGTCCAACTATTTACGCTAGAGAAGACGATACAGTCCTTGTTAAGGTCGTCAACCATGTCAACTACAATCTTTCCATCCACTGGCATGGAATAAGGCAACTTCGAACAGGATGGGCAGATGGACCAGCATATATAACACAATGCCCTATTCAGCCAGGTCAAAATTACGTCTACAATTTCACCATCACAGGTCAAAGGGGCACACTCCTCTGGCACGCGCATATCCTGTGGCTTAGGTCCACTGTACACGGTGCCATCGTCATCTTGCCTAAGCTTGGTGTACCTTATCCTTTTCCCAAACCCAACCACGAAAGAGTTATCATCCTAGCTGAGTGGTGGAAATCAGACACTGAAGCTGTGATAAACGAGGCTTTGACATCAGGCCTGGCGCCAAATGTCTCCGATGCCCACACAATCAACGGTCACCCTGGGCCTGTCACCAATTGTCCTTCCTCAACTGCAGATGGATTCACGTTGAAAGTCAAAGCCGGAAAAACGTACCTCCTCCGTCTGATCAACGCTGCACTCAACGAAGAACTCTTCTTCAAAATCGCCGGCCACAATTTGACCGTCGTCGACGTGGACGCCACCTACGTAAAGCCCTTCAAAACCGGCACGATCGTGATCGCCCCGGGGCAAACAACCACCGCAATCCTGACCGCCGATCGGAACACCGGCAAGTACATCGTGGCGGCGTCTACTTTCATGGACACCCCCCAAGGGGTGGC | |||||||||
gi|238356314|gb|GR112787.1|GR112787 CCBG5560.g1 CCBG Mimulus guttatus IM62 floral buds (H+L) Mimulus guttatus cDNA clone CCBG556 TCGTTGAGTGCCGCGTTGATG EST sequence (targeted fragment marked with yellow): TTTATTTCCACCCGGCTGATTGCATGCAACAAATGCTCGGACAAGTCAGGCGCCACAGAGTCAATATGATGGCAATATTTGCACTGTCATCGTAACTACCATGGTGTTGGAGGGATGGCAGCGGAAGCTTGACCCAGAGTACGACGCGATGCAAACGTTGCAAAAATTGCTTTTCAAAGCCGATTGGGTGGATTCTCTCTTCTATACAATCGAAGGAGTCATGGCCCCATAAGGTGCCCCCCTCATATTCTTCAGTTATTATATAAAACAATAAATCTGAAACATTTACTGCTCAGATAGTTACAATGTATTCGAAAATACATTCATGTGAAAATGCACAGGCGAAAAACCCGATGAGTGAGAATTGAAGAAACGTACCTAGAATTTGCTTTTTCGATCTTTCTAATGCTTCGAAGAATTAAAAGCATTATTGAATGCAGCGTTGGTGAAACGACATTTGTAGATGATGAAACCATCGGAAAAGAACGAACGAAGATATCATCAACGCTGCACTCAATGAGGTTTTTTAAGCTCTAACCTCAAATCTTCTCCTCCCACCTTTTTTCCCTACCGGTTTCAGTTCCCGAAAATGTTGGTTTATGATTTGTTAATATAGGGCTATCACAAAGTACACATCAGGTTGTAATAACATTGTACTATTTTTGCTTCTTATAGTTAAAAGTTAAAACACAGCTTCACTGGTTGTACTGAAATTGTGTGTGTAGTACGCACCACTTGACATTTTTTCTGTATATTGTAAATTCAACTCTTGTCACGTGGAAGC | |||||||||
gi|238169555|gb|GR042123.1|GR042123 CCIC20525.g1 CCIC Mimulus guttatus IM62 roots (H) Mimulus guttatus cDNA clone CCIC20525 3', TCGTTGAGTGCCGCGTTGATG EST sequence (targeted fragment marked with yellow): AAAAATACCAGTTCGACATTCAAGTGAAGAATGTGAGCAGGTTGTGCCATTCGAAGCCAATTGTAACGGTAAACCGGGATGTTTCCCAGGGCCAACGATCTACGTTAGAGAAGGAGATCGACTTCTTATTAACGTCACTAACCATGCACAATATAACATGTCCATTCACTGGCATGGAATGAAGCAATACCGAAACGGGTGGGCAGATGGACCGGCTTATATAACACAATGTCCGGTTCAGACCGGTCAAAGTTACACGTACGATTATAATGTAACCGGTCAACGAGGAACACTATGGTGGCATGCACATATATTTTGGCTAAGAGCTACTGTTTATGGTGCTATTGTAATTATGCCCAAAATTGGGGTTCCTTATCCTTTTCCTCAGCCTGCTTTCGAGTTTAATTTAGTCCTAGGGGAGTGGTGGAATGATGATGTTGAAGAGATTGTTAAACAAGGAAATAAGCTCGGATTGCCTCCGAAGATGTCCGATGCGCATACTATCAACGGCAAGCCGGGCCCACTCTACCCGTGTTCCGAAAAACACACTTACGCAATAGAAGTCGAGCAAGGCAAAACCTACCTCCTGCGGATCATCAACGCGGCACTCAACGACGAGCTCTTCTTCGCCATCGCAAACCACACGCTAACCGTAGTGGAAGTCGACGCGGTCTACACAAAGCCCTTCTCGACCGAAGCAATCCTGATTGCCCCGGGCCAGACAACGAATGTCCTGGTCCGGCGCCAACCAAGCCC | |||||||||
gi|77491225|gb|DV208765.1|DV208765 0089P0116Z_H03_T7 Mimulus guttatus library 2 Mimulus guttatus cDNA clone 0089P0116Z_H03 3', m TCGTTGAGTGCCGCGTTGATG EST sequence (targeted fragment marked with yellow): GAAACCTCAATTATATTATTTAAAAATCGAATCTTTACTCACACCAAACACAAACAGGGACTCCAGAAACGAAAGATCAACTGGCACTCAACGATTTTATGTCGTCAATCAGACGCTTCAAGTTACTAAAAGACGATCCGCCTTCGGTCAAGCTTGTTTTAGCCGATTTCGCCATGTCATCAGCCCTAAGCAGAAACTCGTCTTTCCTCACCTCCATAAGATTCTTGATTGTCTTCTCAATCAAACTTCTATCACAAGTGTCTTTC | |||||||||
gi|238378632|gb|GR126222.1|GR126222 CCBX665.b1 CCBX Mimulus guttatus IM62 floral buds (N) Mimulus guttatus cDNA clone CCBX665 5' TCGTTGAGTGCCGCGTTGATG EST sequence (targeted fragment marked with yellow): ACAGATGTAACTCAGTTCAACAACCAACCGCTCTGCACACTGTCACGATAACCAAATCGTTATATGGGTCGGGTCGGGCTGTGATTTCGCGGTCGAGATTTTTCGATGGCGAGTTCAAACGGAGGAGGAGATGTGTGGAGGGCACATACGGCGATGGCGGCGGCGCAGCTGTTCTACGGCGGCTACCACGTCATCACCAAGGTGGCGCTCAGCGACGGCGTCAACCAGTTCGTCTTCTGCGTCTTCCGCGATCTCCTCGCCCTTTCCATTCTCGCCCCCGTCGCCTATTTCCGCGAAAAAGGGCTAAGACCGCCGATGAACAGACACTTTTTATTCACGTTTGTCTTTCTCGGTTTAACCGGGGTTTTCGGGAACCAGCTTTTATTTCTTTTAGGTCTTGGCTACACAAATCCAACGTATACTGCAGCCATACAACCTGCTATTCCAGTCTTTACTTTCGTCTTAGCCATAATTATGGGTACAGAAAAGTTGGATTTACGAAAAACCGATGGTCGAACAAAGTTAGGAGGTACTCTTGTCTGTATTTCCGGTGCCGTTCTAATGGCTACTTTCCGTGGGCCCACTGTGTTTGGGAATAAGGAATCGGATATTTCATCATCTCAAAGTGAGAGAACTTTCGAACAAGGGTTACCGTCTACTTTTCTTGATTTAGGGATCGACAATTGGCATCTCGGGG | |||||||||
gi|238431892|gb|GR163638.1|GR163638 CBPF10050.b1 CBPF Mimulus guttatus IM62 roots, seedlings, fruits, callus (H) Mimulus guttatu TCGTTGAGTGCCGCGTTGATG EST sequence (targeted fragment marked with yellow): TGGAAATCCGACACCGAAGCTGTCATAAACGAGGCTCTAAAATCCGGCCTCGCTCCCAATGTTTCCGATGCTCATACGATCAACGGTCATCCTGGACCGATCTCGAATTGTCCCTCCACAGGTGGTTTCTCGTTAAACGTTTCACCGGGGAAAAACTACATGCTACGACTAATCAACGCTGCACTCAATGAAGAACTCTTTTTCAAGATCGCCGGCCACAAACTGACGGTGGTGGAAGTGGACGCCACCTACGTAAAGCCCTTCAAAACGGACACGATCCTGATCGCACCGGGGCAAACCACCAACGTGATCGTAACGGCGGATCAGGGCGCCGGCAAGTACATGGTGGCGGCGTCGCCGTTCATGGACACTCCGGTGGTCGCCGTCGACAACAAAACCGCCACCGCCACGATCCACTACTCCGGCACGCTCGCCAACTCCCCGACATCCTTCACCGCCACGCCCCCGCAGAACGCCACCCCAGTCGCCAACAATTTCGTGAACTCGCTCCGAAGTTTGAACTCGAAGAAATATCCGGCGAAAGTTCCGATGAAAATCGACCACAGCCTCCTCTTCACCGTCGGACTCGGAATCAACCGCTGCCCGAGCTGCAAAGCCGGAAACGGGAGCAGGGTGGTGGCGAGCGTGAACAACGTGACTTTCGTGATGCCGACGGTTGCTCTACTCCAAGCGCACGTGCAAAATATCAAGGGGGTTTTCACCTCCGATTTTCCCGGAAACCCTCCTCACGCGTTTAACTACACG | |||||||||
gi|238359563|gb|GR109697.1|GR109697 CCBG3900.g1 CCBG Mimulus guttatus IM62 floral buds (H+L) Mimulus guttatus cDNA clone CCBG390 TCGTTGAGTGCCGCGTTGATG EST sequence (targeted fragment marked with yellow): ACATGTCTCTCACGCATATCATCGAACAGTTCTCGTCCAAGGGCTTCTCCGTCCAGGAGATGGTCGCCCTCACCGGGGCCCATACCATCGGGTTCTCCCACTGCTCTGAGTTCGCCAACCGAATCTACAACTTCAGCAGCACCGCAGACTACGACCCCACCATGAACCCCGACTACGCGCAGGGGCTCAAGAAGCTCTGCGCAAACTACAAGAACGACTCCACCATCGCCGCATTCAACGACCCCATGACCCCCGGAAAATTCGACAACATGTACTATCTGAACCTGCAGAAGGGCGTCGGACTGCTGGCCAGCGACCAAATTATGGCCTCCGATCCAAGAACGAAGCCGTTCGTCGATCTTTACGCGGCGAACCAGTCGGCATTTTTCGAGGCATTTGCTCACGCGATGGAGAAAGTGAGCGTACACAATGTGAAGACGGGGAAGAAGGGAGAGGTTCGGAGGAGGTGCGACGCGCCAAATACACTCCAAGGAAGTTAAAAATTGTTAATAAAATTTTATGGTATTATTATTAATATTATTATTATTGTTCTTTAAGTATATATATATATATATATAAAATATAGATGATTTGTGATGAAAATATTTTAAATTATGTTTGGAAATTTTTTATTGGAGATGTTAAGACTAAAGTGGTGGGATGTTTTAT | |||||||||
gi|238130948|gb|GO999942.1|GO999942 CCIG14921.b1 CCIG Mimulus guttatus DUN10 floral buds (H) Mimulus guttatus cDNA clone CCIG149 TCGTTGAGTGCCGCGTTGATG EST sequence (targeted fragment marked with yellow): CACACACACACATACACACACTAAACTCAGATCATACATACATACAGAGCAATGGGCTGCCTGACCCGAAGTTTCCTGGTCGGAGCTCTGGCGGTGCTCCTTGCCATGGCCACGGCAGCGGACGCCTGCACCCCGGCGGACCACTCAGCCCTGCTGGATTTCAAGGCGGCTCTCAACGAACCCTACTTGGGCATCCTAAACACGTGGTCCGGCGCCGACTGCTGCACCAACTGGTACGGAGTCACGTGCGACCCGGAAACTAAACGGATCGCCGACATCGTCCTCCGTGGCGAGTCGGAAGACCCGATCTTCGAAAAAGCCGGCCGGTCCGGTTACATGACCGGTTCAATCTCCCCCTCCGTCTGCCACCTCGACCGCCTCACCACCCTCGTCGTCGCCGACTGGAAGGGAATCTCCGGCGAGATCCCCTCCTGCATCGCCTCCCTCCCCCACCTCAGAATCCTCGATCTCATCGGAAACAAACTCTCCGGCCAAATCCCCGCCGACATCGGCAAGCTCAGCCACCTCACCGTCCTGAACCTAGCCGACAACCAAATCTCCGGCCACCTCCCGCCGTCCATTGTCAACCTCAACAGCCTAATGCACCTAGAACTCAGCAACAACAAACTCACCGGAGAAATCCCCTCCGACATCGGAAAATTATCCATGATGAGCCGGGCACTACTAACTCGGAACGAGTTCACCGGGTTCAATACCGAGTTCACTCGCCAAATATACAGGCTGGCGATTTGGATCTATCCATGAACCAAATAACCG | |||||||||
gi|238108016|gb|GO988969.1|GO988969 CCIG8618.g1 CCIG Mimulus guttatus DUN10 floral buds (H) Mimulus guttatus cDNA clone CCIG8618 TCGTTGAGTGCCGCGTTGATG EST sequence (targeted fragment marked with yellow): CCCGGGATAAATGTATCCGATTATATACTCCGTGATGATGTTCAATCCCGGTGACTGGTTAGTAATGGCAGTAATGATTCCGATCGGGAGGGTAAAGAAAATGGCGATTACGCATGCTAACACGACACCCCACCACGGCAATTGAAGTTGCTCCTTGTAATACTCGCATGCAAAGATAGTTAGTGCAATATTTACCACGAGAATCGCCCAAAACCACCACTCGGGTACTTGTCTATACTTGCTCATCAGTTTCGTGTGTATGTCCATTTTCTTTTCACTAAAACTCGATTTGCTTTGCTCCCATATTTCTCTTCCGTGAAAGAGAAGCACATGCATTATCGTGGCGCTCAACGCGGCGAATCCCACCCCATATGTCATAGCGAAAAACGTGCTAAGATGAAGAGGCCCTTCACGCTCATAGGCCGCGTTGTCAAGGTGGAAATTCGAATCAACGATGCTAGAAATATCGTATATTTGCCCCGAGCTAGTGAATAAATCGTCGGAAAATATAGGGAAAGTTTTGGCGTCATAGATGTTGAACCAATAGCTAAGTGGAGTCACAACGTACATAACAAAGAAAAATCCGACCGCCACATTGGCGGTTGCGAACCACGGGCTGGCTAACGGGCTTCCTAGGTAGGACGAAATGGTTGACCAATCGAGCCCGATGGCTCCTATGCCAAGCCCGCTTAGGCCCGAACCGAGTTGTTGGGCTAGAACCGATTTGGGAAAGACCCAACATATCCATGAGAGTGAGGTCAACATTTCGCTAGATCGCGA | |||||||||
gi|77494023|gb|DV210206.1|DV210206 0089P0137Z_H08_T7 Mimulus guttatus library 2 Mimulus guttatus cDNA clone 0089P0137Z_H08 5', m TCGTTGAGTGCCGCGTTGATG EST sequence (targeted fragment marked with yellow): AAGGGACAAACGCAATCGATAACAATTTTATATGTAAAATTTGCATCGCTATTATCGCAATCCACATATAATAGTAAACATACATAGTTTTAATTAAAACACCAACCACAGTTATTTCATATAGATTCTACACCTAGTTAATAGCGGTTCTTCGTCTTCTTCAAACACATATTCACAAAATTTGTAATCCAACATCGAAAATAAAATTCAGCATTGTTCGAATACGTCTTTCAGAGATTCGCCTCTCTACTCCTCCTCTTCTCCGTTATTGGCAAGTTCACACTCGTCAATCCATTCGCTATATATATCTATAGCCTCGGTCAAAGCTGTCACGTTGGTGCTAAAGCTCTCTTGGCAAATACGGCAAGATGCCTCACCGATCAAGTTCTTCATATCAATTCGGCATTCAACGCTGGTGCCATGGTTACAGAAGGGGCAGCTGAAAACAGTGTCGAGTTTGTCCATACGCTTCTTTGGTGGCGGCTTCGCCCTCGACTTTCTCTTACCCATTTAGTTCAAGTAGGGATTACTGTAACTTACAATTTTGCTTCGTCCTGTATTCGGATAGATTCTTGCTACGAACACACGATAATTCC | |||||||||