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mature miRNA: TTTGGATTGAAGGGAGCTCTA
species: Musa ABB Group
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|197647499|gb|FL659832.1|FL659832 Embrapa_Musa_ABB_Stressed_Cachaco_D057TFB Embrapa_Musa_Cachaco_ABB_Stressed Musa ABB Group c

TTTGGATTGAAGGGAGCTCTA
|||||| ||||.|||||| |
CAACCTACCTTCTCTCGAGCT

EST sequence (targeted fragment marked with yellow):
GGCGGACGTAAAATTTATGCCTCTTGACTCGAGCTCTCTTCCATCCAACCCTACGCGCTATATCCTTATCCGTCCGAAACCATTACACTCAAATCGAACCCTCATTCTCAATTCCTCTTTCTTCCTCCCTGCCCTTCCGCAGCCGCTTCTCATCGCACCGTCTCGTAGTTTCGCCCTCTTCGTCTTCCCCATCATGAACCGAGAAAAACTCATGAAGATGGCAGGTGCAGTCCGCACTGGTGGAAAAGGCAGTATGCGCAGGAAGAAGAAGGCAGTTCACAAGACCCCAACTACAGATGACAAAAGGCTTCAAAGCACTCTGAAAAGAATTGGGGTGAACACTATCCCTGCTATAGAAGAAGTCAATATTTTTAAAGATGACATTGTCATCCAGTTTCCTAATCCAAAAGTGCAAGCTTCAATTGCAGCCAATACATGGGTGGTCAGCGGTTCTCCCCAGACTAAAAAACTTCAAGATTTGCTACCTGCAATCATCAACCAACTAGGCCCCGATAATCTAGAGAACTTGAGGAAGCTTGCAGAACAGTTCCAGAAACAAGCACCAGCTGCTTCTGTTGCTACGGGTGAAGAAGATGATGATGATGTCCCAGAGCTGGTGCCTGGAGAGACATTTGAAGAGGCTGCAGAGGAAAAACAAGCTTCATAATCGCAATACTCGAGGGCAACTCTAGTCTTTTTCTCTCAGTTTTCTTGATCATCGTTACTTATCAGTTGTGATTTGGTGATAGTACCATAAGTCAACTCCTCCAGCCTATTCTAACTAGGAAGACTCTTGTCAGATGTCGTAATCTTTGTTCCTTTTGCATGCTTGCGATGT