| mature miRNA: TACCACTGAAATTATTGTTCG species: Pinus taeda database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|49444292|gb|CO362975.1|CO362975 RTK1_6_H05.g1_A029 Roots minus potassium Pinus taeda cDNA clone RTK1_6_H05_A029 5', mRNA sequ TACCACTGAAATTATTGTTCG EST sequence (targeted fragment marked with yellow): TCATGCTATTCTGCTGATTAGAACATGGTATTTCCAAAATAGTTGAAGATGATAAGAAGTTGACATCCATTGATACACTGAAGTTGACTATGATAATAAAAATCGCATGGATTCAGTTAGGAAACCTACCGTGGCCAATATATCAGCTATACATGCCAATATAATGAAGGACAAGATTGATCTTCATACCGTTTCAGAGATAAAAGATACTGCTAATGAGAATCTGGAACCCAGTATGAGAAATAAATGCAAATCTGAAGTAGATACATATGGGGTCATGAAAGCAACTGCTGATGACAGTATAGCAACTGCCTCCAATCATAAATATGAACAGGAGATTAAACTCTCATCTCTCAGTGGACCTACAAGTGTTAACCATCCATTATTGGTAGAAGAAATGGAAGTTCCTAATGGTAGGATTGCTAGAGCATCTGAATCAGATAATCTGTCAAAGGATGATGAGCTTAGTGTAAAGGACATTAGAGTTGATGAAGGGATGCCTTCAGAAGATAAACTGTTAGTATATTCAGATCATAACACTTGTGTTGAGAAAGTATTGACTGTAATGAACGATGGTTACAGTGGTAGTCTTGAAAATAGGGAATGTAAGATGGGATCTCAAAGTTCGTCTGCTCTTGATGTGAACAGGCTTACAAAGGATGCAGTGCCATGTTGCCAACTGAACAACAACAGTGGAAAAGAAGCATTTATTTTAGGGTTTTCAAATTTAGATGACAAGAATAGCCCTAATTCTCTTAAAGTGAATAAGGAAGCCAAATGGAATGGTATTGGACATCCCATTGATGAGTGCAGCAACTGTGCACTTTCTC | |||||||||
gi|74162852|gb|DT632783.1|DT632783 EST1147714 Normalized pine embryo library, Lib_D Pinus taeda cDNA clone PIMFN69 3' end, mRNA TACCACTGAAATTATTGTTCG EST sequence (targeted fragment marked with yellow): CGGCCGGGCGTTTGAACTGGTTGAGACCAGTAACTCCACGCTGCCTCCGATAATCAACGCTTATGAGTATTACTCGCAAGCTGGCAACGACAATGTAACGTATTCGCAAGACGTTGACGCTCTTTACGCTATCAAAAGGAGATTTCAGATTTCAGATTGGATTTCTGACCCTTGCTATATGATACCCTGGAACGGAATTGGCTGTGATGACACTACTATGCCCAATAGAATTTCTGAAATCGATTTATCCGGAAGGAAACTTACAGGGACGGTGCCTAGCGAAATTGCACAGTTAACTGCATTAGTTAATGTGTCACTAGACAATAATTATTTCAAGGGACCCATGCCAAATTTCACCAATTTCACCAACTTAGAGCGCCTATATTTACAAAACAACAACTTGAGTGGTACTCTCGAATGGTTATCTAAATTTAAAAACCTTAAAGAATTGAATATAAAAAACAATAATTTCAGCGGTGTAATTCCAGCGAAGCTTTTCCTCGATTGTTCGCTGAAGCTCAATTACTCAGGAAACCCGTACCTAATTCAAACAAGATTAAATGGAAAATTGACTGATTTCGGTTTTTCAAGGATGGCTATTGATGGGGAGGCTACTCACATTACCACCGCAGTGAAAGGAACGTTTGGATACCTGGATCCAGAATATTTCAACACTCAAATGTTGACGGAGAAGAGTGACGTGTATAGTTTTGGAGTAGTTTTGTTAGAGATCATATGCGGGCGAGCACCCATAGATATAAAACTGGCTGAAGAAAAAGTAAACATTGTTCGCTGGGTGACACCATATCTGGTAGAGATGGTTGAAAATGGTGGCGAAATAATAGAAATC | |||||||||
gi|61671469|gb|DN613969.1|DN613969 EST967019 Subtracted pine embryo library, Lib_B Pinus taeda cDNA clone PSABY51, mRNA sequence TACCACTGAAATTATTGTTCG EST sequence (targeted fragment marked with yellow): AGACTTAACATGAATCATTAGGTGAAGAATAAATGAACATTCCGCAAAGGATTCTACCTCAACCCTCCATCTGGAGCAGGCGGCGTCTATGAGCACCATTATAAAAGATAAATCCAAGCAATTTCATCCATTTAACATTTTGATGATCCTGTTCAAAAACTACTTTTAAGATCTAATCCATGTCGTGGACCAGCTCTGCATTACAAGGCCTAAGCCTATGATAAATAATATCTTCTATTAATAATCAGATTACATCACAAAATAGTGTAAGCCTTCACAACTTTGGACGTGCCACAAACAATAAGGTTTTCTGAATCGCGTGAAGTGGTGCACAACCAATTTACTTTTCTTTTGTTGTTGATGCTGAAACTTAAAGGACCTTCACTCCTGCTGCTACTTCCAATCTGACTTGTCCAATTCCATAGCTTGACAGATGCATCATTGCTGCCAGAAATAATAAACTTGCCTGCCTCACCAAACCTTGAGAACGCCACACAGGAAGCAGCAATACTGTGACCTCCTAGACCTGCGTGCAATTGGATCCTCATTCCCTTTGTAATTTCCCCACTTGCAATGTTCTCATTTACATTTGTATTTTTTGATGATTTGGACTGAAATCCTTTTCTAGCACGTGATGACTGCTTACTTTTTGCTCCTGTCACGTTTGACTCAAATCTGAGATCAATAATTTCAATGGTGCCATCACCTCTTGCTGCAGCAACAACCTGGTTATTTTTACCATCCATATTTTCCTCTGGAACTGCCAAAGCATGAACAAAGGG | |||||||||
gi|74163904|gb|DT633835.1|DT633835 EST1148766 Normalized pine embryo library, Lib_D Pinus taeda cDNA clone PIMFZ27 3' end, mRNA TACCACTGAAATTATTGTTCG EST sequence (targeted fragment marked with yellow): CGGCCGGGGACTCACAACCTTTGGCTTTGAAAGAAGAAGTTGGGAGAGAGAGAAATGGATCATAAATCTATTCTTCTGCTCATCACCATGTTTGTGCTCTCTTTTGCTCATCAACATCATGTGTATGAGTATGAGCAGGCGGGTGGATTCACTGCCTTCAATGGACGCAATATGACGGGGGAACCCTCTTCCTCCATGCCCGATAAAAGGGACTTGGAGGCGCTTCTGAGCTTCAAAAGGGGCATCGTATCAGATCCACATGGATGTCTCTCCAACTGGACGGCCCATAACTCACAGAACGTCTGCCGCTGGAACGGAATTTCGTGCACACCAAACACGAAACGAGTGGTTTCAATTTCTCTCCCTGGCTATTGCGGATTGAATGGTACGCTATCCCCGTCTATTGGCAACCTCTCTCTGTTGGGGACTTTAGATCTTTCCGAGAATGATTTCAGTGGAAGAATTCCACCGTCTATTGGCAAACTCTCTCTGTTGCGGACTTTAGATCTTTTCGGGAATGATTTCAGTGGAAGAATTCCACCGTCTATTCGCAACCTCTCTCTGTTGCGGACTTTAGTTCTTTCCCTGAATGATTTCAGTGGAAGAATTCCACCGTCTATTGGCAACCTCTCTCTGTTGCGGACTTTAGATCTTTCCGATAATGATTTCAGTGGAAGAATTCCACCGTCTATTGGCAACCTCTTTCTGTTGCGGATTTTAGATCTTTCCTGGAATGATTTCAGTGGAAGAATCCCACCAGAACTCGGCCGTCTGGTCCAGTTGGAATCT | |||||||||
gi|70784239|gb|DR693887.1|DR693887 EST1083977 Normalized pine embryo library, Lib_D Pinus taeda cDNA clone PWAE548 3' end, mRNA TACCACTGAAATTATTGTTCG EST sequence (targeted fragment marked with yellow): GACAGATCTGACGGATAGAAATTTGGAGAAGCGTTTTTTCCCTAATAAGGTCGAATAGAAGAGGTTTGATTTGTTCCATCCATGTCCATGGCTTATGTAAACGACAATGATTTCAGCGGTACATTTATTGTACACAGCAAGCCCCCCAGAAAGGAAATATCATTGGCAATTGCACTGTTAATCCTCGGCACTATCGTCATTGCCATTGGCCTCTTCATGTTCTCTCAGCAAATCGGCGGTGACAGAACCCATGGTATGTTGTTTGCATTGTTGGGAACAGTCCTGTTTGTCCCAGGGTTCTATTATTCGAGAATTGCATGGTACGCGTACAAGGGCTACAAGGGCTTCTCTTTCTCAAACATTCCAGCAGTGTGAATATTTTCAAAAACTTTCTTTGGTTTGCAGTCTGATCTTATATGTATTACTTGGGGTTTAGTGGGATATTTATTTCTGGGGTTAGGGTTTAAGGTTACGCTATTCAACCTTAAAATTATGGCCAAATTTTGAAAAATTGAAAATTTGCTGGCCTCTCCTGTAAATGAAAGATTGTTCAAATCTTTTCCTGAGGTTTTTTTATTTTCAGGTGCCAATTCAATTACATCGTATAAAGGATATGAGTGTTTGTTAATTCTATAAAAAGCTAAGAAAACTTTGGAGATTATATAAGATTTCAGGCTACGGGAAGAGTCTCCTCCTTT | |||||||||
gi|66690538|gb|DR013032.1|DR013032 HEAT1_16_C05.g1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone HEAT1_16_C05_A029 5', mRNA TACCACTGAAATTATTGTTCG EST sequence (targeted fragment marked with yellow): TCGCCAGATGCCCATATGGAAGATCACCACGTCAAAACCTGGTGCTGTACGCACTGGTTCATTTCACAGCTTTCTTACCTTTAATATCGCTCACATCATCTCCATCTTTGGGATTTTCTTCCTGCACCGTCTGCACCCATGGGCTCGATTTTTGTTCCCACGCATCACAAAGCTAGTTTGTATTTTATTGGCAGATATCGAAGGACACTGGACTTGGTTTGAAGGACACTGAACTTGTATAAGAAATACATGGTTGCTTGATGTTTCTATGTAATAATGTCTTTCCTTTTTGGTTGCTCCTCTTCCCGGTGGTATTCTACCACTGAAATTATTGTTCGAAATAACACCTGCAATTCATGGATGTATACTGCCGTGGTATCGCCAGTCTAACCTAGTTGCAGGGTTGCAACACATGGCATGGTGGGGGATCTATTGGGCAATAACCAAGTTGCATGGGTGTATTTATCCAACAATAATTTCAGTGGAAGACTTCCATCGATCTGGAAGACTCATGGGGATTTCGAATCAGCAGGTTATGGCTATGTCATGTTCATCTTTTATATGTGTTGATTTTGTGTATTAAAATGGAAAAAGTTGAGTATTTTCTGAATTATGAGCTGGAAAAAGAAGGGTTCGGTTATTTGCGCATTGAAATGTC | |||||||||
gi|8050171|gb|AW888160.1|AW888160 NXNV_129_H05_F Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone NXNV_129_H05 5', mRNA seq TACCACTGAAATTATTGTTCG EST sequence (targeted fragment marked with yellow): TATCGAATTGCTAGAAACCGGGACGCCGAATATTGATTTCAGTGGTCATAGTGAGAACACATTCCGTATCATTGATTTTTCTGTGCCTCCCACGGCTTATGGCAAGTTTATGTCAACCATTTTTATGCAATGGGTTAAAAACGATGTGGGTGAAATTTTCATCCGTCAGTTTGAAAGCTTTGTCAGCCGTTTTTTGGGGAATGGGCATACCAGTTGTATTTTCCAGGAGTCCTGCAAGGATAATCTGGTTGTTGAAAGTAATGGAGACATTTACGAATGCGACCATTTTGTCTATCCACAGTACAAAATTGGAAACATTAATAAATCTGAACTCAAAACGATGAACAGTGTACAACTGACAGCGCNNNNNNAACGGATTCNANCGAAATGTCAGCNNTGTGCATATNNACCTATCTGCAATGGCNNNNGTCCTAAGCATCGTATTACTNNAGT | |||||||||