| mature miRNA: TCGGCCTTGAATGTTAGGAGAA species: Pinus taeda database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|5903525|gb|AW042996.1|AW042996 ST28A02 Pine TriplEx shoot tip library Pinus taeda cDNA clone ST28A02, mRNA sequence TCGGCCTTGAATGTTAGGAGAA EST sequence (targeted fragment marked with yellow): GGAGGCACGTATATGGGGAGTCTTTGAGATTAGATTGGAAGAACAAAAATGAAAATGTGTTTGAAAAGGCAGGGTAGCGAAGACCGGTTACCATTATAGTAAGCATCAGTTTGGATCAGGAATATAGTAAATTATAGGTTGTGGTCAATAAGATAAGATGAGATAAATATATTAATGTTCGACAAATGACCACTGAAGTAGGTCAATGGGACTCTCAGGTATGATGATGTGTAAACAAAGTGGGAGTGCTAAGGTAGCTCCTTTATAAAAGGCAAGAAGTAGAAAATGAAAACATGGTAAGGTCCAATCTAAAACCTAGAGAGTTGACTTAAAAAATGAAGATGTGTTCTAGGAGAAAGATGTACAAGATGTGTGTCACAAATGAATGGCACCAGAGGTAGGAGGTTGCTCTGGTTCACAAGAACCGTCTCTCCTAGCATTTAAGGCCGAATG | |||||||||
gi|74155597|gb|DT624330.1|DT624330 EST1158605 Sequencing ESTs from loblolly pine embryos Pinus taeda cDNA clone PIMAD46 5' end, TCGGCCTTGAATGTTAGGAGAA EST sequence (targeted fragment marked with yellow): CGTTTCTGAAGTGACAGAAATTGGGAAATTAATGACTGTTTTTTGTCCGTTATTTGACGTGAAGTATTAGGGTTCGTTAATGGCGAACGCTGCGAGTTTCGATTCTCAGACCTCTAGACTAGCGATGGATAACAGATCGGTACTGAAGCCCGAGCCTCTGGTGAAAATGAGTGTCAATATTTCTGGTTCTGGTGACGGCGGATTCACCGTCAATAGACAGGGGCAGATTTCCGTCAAGAAAGCCCGCGCTGTTCACATCCAGGTTATGAGAATCCGCGAAGAAGATGAGCATCTTGGTGAGGATTTAATGGAGGGCGTGAATCCGAAGGACAGGTTTGTGTTTTTCCCGATCGCGTCGCAGATGAAGGACATGTTCTTTGAGTATTCGAGGCCGACTTTCCCGTCGCCGCTCGGCATGAACGCTGGAGTTCGGTCGCTCTGAGAAGATTCTGACACTCATCTGAGTTTTGAGAAGGTTTTGTGTGTAGATATTTGGATCTGAGCCATGAGGCATTTGAGGCCTTCTGTATATTAATTGTTGTGAAGTTATTTCTGTCTGTAAATGCTTTCCCTGGCAGTTTTGTTTAAAACCTGCTGTGTTGGAAATGGGGCAGTTGCTTTCTGCCAGAATAATGTAAATGCAATACAGTGATCAT | |||||||||
gi|21821417|gb|BQ696101.1|BQ696101 NXPV_036_D04_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda cDNA clone NXPV_036_D04 5' TCGGCCTTGAATGTTAGGAGAA EST sequence (targeted fragment marked with yellow): CGCAGATGAAGGACATGTTCTTTGAGTATTCGAGGCCGACTTTCCCGTCGCCGCTCGGCATGAACGCTGGAGTTCGGTCGCTCTGAGAAGATTCTGACACTCATCTGAGTTTTGAGAAGGTTTTGTGTGTAGATATTTGGATCTGAGCCATGAGGCATTTGAGGCCTTCTGTATATTAATTGTTGTGAAGTTATTTCTGTCTGTAAATGCTTTCCCTGGCAGTTTTGTTTAAAACCTGCTGTGTTGGAAATGGGGCAGTTGCTTTCTGCCAGAATAATGTAAATGCAATACAGTGATC | |||||||||
gi|67050061|gb|DR072263.1|DR072263 RTDK1_25_D02.b1_A029 Roots, dark Pinus taeda cDNA clone RTDK1_25_D02_A029 3', mRNA sequence TCGGCCTTGAATGTTAGGAGAA EST sequence (targeted fragment marked with yellow): TTCCCTCGTGCCGAATTCGGCACGAGGCCACCATCAAAATATAGAATTACTAGACACTTGAAGAAATTCCATCACTAAACTACTCATCATTTGAGGGATTGTAATCTTAATCTCTCCATTTGATAAAGAGGTGCTCCAAAGAGGTATGAACACAACATAAAAAATGATATGTTTATTAATGTTCAACAAATGACTGAAATTTAGTCCACAGGACTATTCAATACAAAAGTGTCTGAGTGTTAAGGCTACTCCTATAAAAAGCAAAGCAAAACAAAGCTATTGTATAAAACTATACTCTGTTAGTGGAAAGCCAAAGTGATAAAATGTTTTGGTTAATCAAAAAGAAGAAAAGAGTCTCATCTCTCCTAGTGTTTGCCACGAGAAGGACAAGGGGGGTTGTCTCCCTAAGTGTTCGCTGTCAAATGTGTCGCTCTCTTACCATTCAAGGTCGAAGAGGTGGTTTGTCATTGGGATTGGGGGAAGGCATGTTGTTTGCTAGGTTGACGTANGATACCTTGAGATCTAAAATGGTACCTTGTGATCTAAAATGGTGGCTCCATAATGCCTTGTTGGAGCTAGGGGATCGATTTCACCTTGGAGTTTGATGGATGCAAACCTTGAAATGGTATCGCTCTTTGCTTGTCTCTTTG | |||||||||