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mature miRNA: CCACGACATTAAATTCTGGGA
species: Solanum tuberosum
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|115276668|gb|EG014904.1|EG014904 SDBN002B24u SDBN Solanum tuberosum cDNA clone SDBN002B24, mRNA sequence

CCACGACATTAAATTCTGGGA
|||.|||||||||| |||||
AGTGTTGTAATTTAA-ACCCT

EST sequence (targeted fragment marked with yellow):
GGGAAGAAAAAAGTGTAGAGGAGAGTCGAGGTTCCCTGCTCAGGTGAGGATCCGTGTTAGGAAACTTGGTAAGGCTTTGGAGGAAGATGCTTTTAGACCAGTTCTGCATCACTATGATGGACCCAAATTCCGTCTTGAGCTCTCTGTGCCTGAGACTTTGGGCTTGCTGGATCTCTGTGAAAATACCAGTGCGTAAGCGCCAGTCTGAAGTCATGGATTTATTAGCATACATTATAAACTCGTGAATGTTGTAGTTTAGTAGTGTTCTTCACTGTATTAGAAACGTGTTCTCCACAGATTTCCAAAGCACAAGTTTTGGTGTAAAGTCTGGCTGAGAGAGATTCTGAATAGCAGGGTTGGCTAATTTAGCCAATGAAGTGTGATTTTCTTTGGAGATGCTTGAATATGAGCTTCCCAAATTTAATGTTGTGATCTTACAATGAATTAGAGAAGTAATGATCGGGTGAGCGGCCGCTGCAGGTTTTACCACTGCAAAAGAGAGACTATCAGCAATACTCTCG