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mature miRNA: CTAATGTGTTGTCTTTGTTAG
species: Solanum tuberosum
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|78747684|gb|DV624087.1|DV624087 93581.1 Cold Sweetening C Solanum tuberosum cDNA clone 93581 5', mRNA sequence

CTAATGTGTTGTCTTTGTTAG
|||||||||||||||||||||
GATTACACAACAGAAACAATC

EST sequence (targeted fragment marked with yellow):
CAAACACAACCACTGATATTAAAACTGGTAGTTCATTACAAACTAAGAGGAGGTGGAGAACGCACTTTAGTCCTCTTTATATTTTTCTAAAAATTTTCCCCTTTATTTATCAAAAATTTCATCAAACATAAACCTCCCCTTACTAACAAAGACAACACATTAGCTAAATTAACTTAAATCCAAAATACTTACTCAAGACACTGACCAAACATTACCAAAAGACCAATTCAAAGCAAGCTGAGTTTCTGTTCTAGTATTTCAGAGCTTGTTTTTGTACCAGAAGACACCTTTGCCTTGAGATGATTCGTCTTTCTCGACGTAGAGACACTCTTTAGCTTCCCTCCACATTGCCTTGAAAATCGGGGTTCCATCGAATTGGTAGTAGTCTCCGAGTAGTGGCTTGACTGCTTTGGTTGCCTCCATCGCGTTGTAGTGTGGCATGGTTGAGAACAGATGGTGCACCACGTGAGTGTCGGTGATGTTGTGGAAGACCTTGTTTAGAACCCCATAGTCTCTGTCACAGGTTGCCAAAGCTCCCCTAAGCCAATCCCACTCGGTTGAATCGTAGTGTGGCAATGATGGGTGAGTGTGCTGCAAGTAGGTGATCAAGACAAGGAAGCCGTTCACGACGAGGAGGGGTACACCGTAGATGCACACTAGCCAAGCTAGACCTTTCACTAAGGCAATACGG