| mature miRNA: TTTTTCCTCAAATTCATCCTT species: Solanum tuberosum database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|160521072|gb|AM908386.1|AM908386 AM908386 Solanum tuberosum cv. Yungay leaf adult Solanum tuberosum cDNA clone 4H2, mRNA sequ TTTTTCCTCAAATTCATCCTT EST sequence (targeted fragment marked with yellow): CTTGATATCGAATTCCATCAGGCAGAGGACGAGACAGAACGCAGAAAATTTTTTCTTCTCCCCTATTTTGCACCAAAGATTTAGGCATGGCTGATGCATTAACAGAAGACCAAATTTCCGAGTTTCGTCAAGCCTTTTGGGTTATCGACAAGGATTGTGATGGGGTGATAAGAATGGAGGAACTTGCGTCAGTAATCCAATCTTTACATGAACATCCAACAAGGGAAGAGATACAGGAAATGATAAATGAAGTGGATCCTGATGGTGATGGTTCTATAGATTTTGAAGATTTCTTGAATATCATGGCTAAAAAACTCAAGGACAATGTAACGGAGGAGCTAAAAGAAGCATTCAAAGTATTTGATCGCGATCAAGATGGATTTATTTCGGCTAATGAGTTAAGAAATGTGATGATGAATTTGGGGGAAAGATTGACAGAGGAAGAAGCCCAACAGATGATTAGAGAGGCAGATCTTGATGGAGATGGCCTCGTAAGCTATGACGAATTTGTTAAAATCATGATTATTTAGTCCTTTTTTTTTGTAATTTACTTGCATATAATTAAACAGCTTAATTTCTACTGTTTA | |||||||||
gi|78750566|gb|DV626969.1|DV626969 97507.1 Cold Sweetening C Solanum tuberosum cDNA clone 97507 5', mRNA sequence TTTTTCCTCAAATTCATCCTT EST sequence (targeted fragment marked with yellow): AAACAGCAATTTCACTACATTAATCTGGTCAAAGTAATACATTAATAACTTATTAGAACCCTCCTACAATTCTCACATTGAACTACTACATATTCCTCATAAGTCATAATATTCATTCTCTTCCAGTTAGTTTTCTTCTTCACGAGTCGGCGGCGACAGCAACTGCAGAAGCTTCTGGTAAGGAAAAGATTTTCACAGGTGAAGTTTGGGTTTTGAGTGGGATGTGTGAAGAACCAAGTAACTCCTTCTCCTTCTGAATCCCAGCACCTACGATTTCAAGAACTTTCCGAACTTCATTTGCAAGCTCTATGATGTAATCATCTTCATGATCAATATCGTATAGAGCCTTCTCCATTTTGAATATGTATTCTCTGTTGTTTCCACAGGGACCATGAGCAGTCGCAATTTGCCAGGCCATCTCTTCCAACGGGGCAGGCCCTAGATAGTACTTATTATTCACTTTGTCAGGAGTGGATGTAAACACTATTACTCCTGTTAAAGCTGGCTGAGCAGAGTCTTCATCCGTGTAGAAGTCTACTAAGGTCTTGCTGTCATACTCACACTCTCTTCTTTCAAGATACTCCATTGCCTTCTTTTCCTTTTCAGGTCCTCCTCGCACACAATAAACAGCACCCCAGCAAATAGCTCCTTCGCTTTCTTCCAATGTGCAGGTTCTTGCAGGGTGTTCTGGTGTACCTCTATGATCAATGCAAGCAAGATCAAACACACGCTTGTAATCCTTGATGGTAACCAATCATTTTCTCATCATATTCAAAACCTGGATCCATACCAAGGAGCCATTAGCGAAATCAGAAGACCTGATTGTGAAGGTTCTTAAGCTGAGAACAATTTATGTTCAAATGGATGAAAAAGCAAGTTTTCTCTCTGAAAAAGTGAATTTGAGGAAAAAG | |||||||||
gi|115271577|gb|EG009813.1|EG009813 SSBT006E23x SSBT Solanum tuberosum cDNA clone SSBT006E23, mRNA sequence TTTTTCCTCAAATTCATCCTT EST sequence (targeted fragment marked with yellow): GGGGCTCTCGGAATTTTCTTCTCATCCTTTCGATAATGGCTTTACCAAACCAACAAACTGTAGATTATCCAAGCTTCAAGCTTGTTATTGTGGGTGATGGAGGAACTGGGAAGACAACTTTTGTCAAAAGGCATCTCACTGGTGAATTTGAGAAAAAATATGAACCCACTATTGGTGTGGAGGTGCATCCACTAGACTTCTTCACAAATTGTGGGAAAATTCGATTTTATTGCTGGGATACAGCCGGACAAGAGAAGTTTGGAGGTCTCAGAGATGGTTACTACATTCATGGGCAATGTGCAATTATCATGTTCGATGTTACAGCCCGTCTGACCTACAAGAGTGTTCCTACTTGGCATAGAGATCTTTGCAGGGGTTTGTGAAAACATCCCCATTGTTCTCTGTGGAAACAAAGTTGATGTGAAGAACAGGCAGGTTAAGGCAAAGCAAGTTACCTTCCACAGGAAGCAAAAATTTGCAATACTATGAGATCTCGGCAAAGAGTAACTACAACTTTGAGAAGCCTTTTCTGTACCTTGCTAGAAAGCTTGCTGGGGATGGCAATCTTCACTTTGTGGAATCACCAGCACTTGCTCCCCCAGAAGTACAAATTGACTTAGCTGCACAGGCACTGCATGAACAGGAGCTTCAACAAGGCCCTTAATTCAGGCACTTCCAGATGACGATGATGAAGC | |||||||||
gi|66838140|gb|DR036245.1|DR036245 20870.2 Swollen Stolon Solanum tuberosum cDNA clone 20870 5', mRNA sequence TTTTTCCTCAAATTCATCCTT EST sequence (targeted fragment marked with yellow): AAGAGAGGTCTGCTCTTGAATCAAGGTGATGGCAGTGATAAGTATGATTTTGAGGAAAAGATAAACTTTGCTGTTTTTCCTGCACTGCAAGGAGGGCCACACAACAACCATATTGCTGCCCTCGCCATAGCATTGAAGCAAGTGGCTACTCCTGATTACAAGGCTTATATGCAACAAGTTAAGAGAAATGCTCAGTCGTTGGCAGCGGCTTTATTGAGAAGAAACTGCAGACTGGTTACTGGAGGGACTGACAATCACATGATATTGTGGGATCTAAGAAATCTTGGGTTAACAGGTAAGAATTTTGAGAAGGTCTGCGAGTTGTGTCACATCACTCTCAACAAAGTAATGGTCTTTGATGATAATGGAAGTATTACTCCTGGAGGTGTGAGGATCGGGACCCCTGCTATGACATCACGAGGCTGTATAGAGAGTGATTTTGATACGATGGCAGATTTCCTCCTCAAGGCAGCACAGATTACAAATTCGATACAGAGAGAACATGGAAAGCTCGCTAAGGGTTTTCTGAAAGGCGTTGAGAACAATAAAGATGTTATCGAGTTACGAACACGTGTTGAAAATTTTGCATCCCTCTTTGCAATGCCTGGGTTTGAAGTATAATCTAGCTGGAAAACTTGTTCTGGTGGAGGAATTCTTTCTTTATTTGTTGACCAACCTTTGTTGTGGATGGGGAGAACAGCGGTGCACCCAACTTGTGGTTAGTGATTGAGTAGGCTTATATGATGTGTTCACGTTTCCCTTGAAGCTCAGCAAGCCCTGGATTAACCTTATGATATGCCACAATGGAGTGTTTTGCATCCTTATCTATTGCCATGGTAAATTGAAGTAATGGTCTGTGTCAGTT | |||||||||
gi|115277976|gb|EG016217.1|EG016217 SSBN001B12u SSBN Solanum tuberosum cDNA clone SSBN001B12, mRNA sequence TTTTTCCTCAAATTCATCCTT EST sequence (targeted fragment marked with yellow): GCTCGAGCGGCCGCTGCATTTGCTTTCGAATTCAAGTTCAAATCCCGAGCATGGGGTGAAGAAGAAGATATACAGGGGACCAATTTCGTGATGGAGTGGGATAGCGATTCGTATTTGAGTGGAGAAGAAGAAGATGGCGTGATTGAGGAAGAAGTTGAGGAAGAATTAGAGGAGCTAGGGTCTATGTTGAGTGGTGGTGGTTCGGCTTTGCCTTTCCCTATTGACTCGCTTTTGCAACCTGCACCTTGTGGTTTTGTTGTTAGCGATGTTTTTGAGCCTGACCATCCCATTATATATGTCAATTCTGTTTTTGAGATGGTTACTGGTTACCGTGCTGAAGGAGTCCTTGGCCAAAACTGGTAAAAAAAATTATCTATAGTTTGTTGTATGTTTTTGTTGCTGTCCTCTTTGATTTTCAGATTAAAATATCTATTTTTAATAAGTCTTATGGGGAATTATACCTACTGAAAAATACAAACACCTGATTTTGAGCGGCCGCTGAACAAGGCACATTACACATCCAAAGAAAAGAAAATACAAAAAAATGGTTTGCCCCTCTCATCCAAAAACTTCCCTGAAATCATCATCTACTAGCTTAAACTCTATGAAGCTGAAGAGCCTAGTGCAATCCTTCATATTCTCCCATGTATACCGAGCTATAGCGAAAGCGAAACCATTATTAGTTCAAATTATGAAGAAT | |||||||||
gi|115273838|gb|EG012074.1|EG012074 STDB003P23u STDB Solanum tuberosum cDNA clone STDB003P23, mRNA sequence TTTTTCCTCAAATTCATCCTT EST sequence (targeted fragment marked with yellow): GTCATTGTTGGTATTCTTGAGACAGATGATATCAAGGATCTGCAGCCCTTGAATGACAGAGTTCTAATCAAGGTGGCTGAAGTTGAGGAAAAAACTACTGGGGGATTGTTTTTGAGCCAGGCTGCAAAGGAGAAACCTTCATTTGGCACGGTGATAGCTGTTGGACCTGGTCCTCTCGACGAGGAAGGGAAAAGGAAAGCACTTTCAGTATCTCCTGGAAATACAGTTCTGTATTCCAAATATGCTGGCAATGACCTTCAAAGGAGCTGATGGTTCAGAGTACATCACATTGAGGGCATCTGATGTAATTGCTGTGCTTCAGTAGATGTTTTGTTATTTATATAAACAAGTCAGTTCATTCTCATTCCAAGTATTTTGCAAGTG | |||||||||
gi|78750628|gb|DV627031.1|DV627031 97579.1 Cold Sweetening C Solanum tuberosum cDNA clone 97579 5', mRNA sequence TTTTTCCTCAAATTCATCCTT EST sequence (targeted fragment marked with yellow): CTTCTATCTTGACAATTTCCAATTTACGGTGAATTTGTGGAAAAATCGATGAAAAATGTCGGTATCTGAGGCAGGTAGTGGAGTAATGAGCAGTAGAGATCATTTCAGTGTTGCCGGAGTTCAAAATTCTCCGGCGAATGTTCCGGCAACGACGCCGGTGGTTCAGAATATGCATATGGGTTACAGAGATGAAAATACAGCTGTGTTTGCCCCTCCACCGTACCAGTCGGCTGAAGGTTCTGCCGGAGCTGGGACTGTGATGTTGCAGAACTTGAACAATAATTCGTCGGAGCCGATGAAACGGAAGAGAGGAAGGCCTAGGAAATACGGGCCGGATGGGTCTATGGCATTGGGTTTGAATCCTGCTGGTTCGCCGCCGGTTGCTGGAGGTCCTCTCGGCGGTAGCTTGTCGCCCCGAGATCCGGGTAATTCTGCTGGTGCTCAAATGCTTTCTGGAGGACCAGCTTCGCCAAATTCTTTGAAGAAAGGTAGAGGGAGACCTCCTGGATCTGGCAAAAAAACAACAAATGGACAATCTTGGATCGACAGGATTTGGATTCACACCACATATTATCGCTGTGAAAACAGGAGAGGATGTGGCATATAAAATAATGTCGTTTTCTCAGAATGGTCCAAGGGCTGTGTGCATCTTATCTGCCAGTGGTGCAATATCAAATGTGACTCTTAGACAAACTGCCACGTCTGGTGGAACTGCGACCTATGAGGGACGGTTTGACATTTTGTCTCTCTCTGGTTCATTTATGCTGTCTGACATTGGTGGTCAACAAAGCAGAACAGGTGGATTAAGTGTATCATTAGCTGGATCTGATGGACGGATTTAGGCGGTGGTGTGGCGGGT | |||||||||
gi|203589591|gb|GD190345.1|GD190345 SS4T7snr005 Potato cv. Sante subtractive library of genes downregulated after PVY-NTN inocul TTTTTCCTCAAATTCATCCTT EST sequence (targeted fragment marked with yellow): CTTCTTACTGAAAATGGAAACACCAAAGATGACCTCAGACTTCCCACCGATGACGCCCTGTTGAACCAGGTTAAAGGTGGATTTGAGGAAGGAAAGGATCTCGTTCTGTCTGTGGTGTCTGCAATGGGTGAAGAACAGATCTGTGCTGTGAAGGACATTGGT | |||||||||
gi|66837404|gb|DR035510.1|DR035510 19306.3 Swollen Stolon Solanum tuberosum cDNA clone 19306 3', mRNA sequence TTTTTCCTCAAATTCATCCTT EST sequence (targeted fragment marked with yellow): TAAAGGTTTTGACACAACCAGCAAAGGAAGACCTTCACAAACTAACTATTGTGCCTTAAGAGGCCAATTCGAAGCTTGTTACGTGGTGAATTCCTGGTGGATGATGAAGTTGAAGAAGAAAAAGGGGCTTTTAAGAAACATGCTGCTGAACTTTTGGATTGTGCAACTACGGATGTCCGGAAAGCTTACTGTAACTGTTTGATTGACATATGTGTCAATCTTAACCAGTTGGAGAGAGCTTGTGAGTTGTTAGATGTTGGGCTAACTCTCAACATCTATACAGATATTATGTCTCGAACTGCTACTCAATGGTCTTTACATTTGAAGAGCCTCTCACTTGGGGCAGCTTTAACAGCATTGCACATCTGGGTTAATGACTTGAACAAAGCACTTGAAAGTGGGGAAGAGTTCCCATCATTGCTTGGAATCAACACAGGACATGGAAAACATAAATATTCCGAGAAAGGTCTGGCAGGTGTATTTGAGTCGCACCTTAAGGAATTAAACGCTCCATTCCATGAGGCACCTGATAAGGCTGGGTGGTTTTTGACTACAAAGGTTGCAGCTACATCATGGTTGGAGTCTAGACGTGCTCAAGAGGTGGTTGCTGCTTAGCAATGGTCAGGGTTCTTTGCTCTCTGGCCTTGATAATTCTTGTGCTACAGAGATTTTGTTTCTCTTACATCTGAAAGGTACCTTTAGTAGATTATTCATTGTTTAGGATACCTCTTGTTTCTAGATGGGGAGTTTTGAATTTTGAGTTCTGTAGCTATCCAAGTGTATCTCTTGCAATCAGCAATAGAAAAAGAATTTGAGGAAAAATGAATGAGATATCAT | |||||||||