| mature miRNA: TCCGGAGGGATTCCTTCTTTG species: Thellungiella halophila database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|209470964|gb|BY826778.1|BY826778 BY826778 RTFL1 Thellungiella halophila cDNA clone RTFL01-40-A22 5' similar to NM_116744.2 Ar TCCGGAGGGATTCCTTCTTTG EST sequence (targeted fragment marked with yellow): GGACAATTCGATTTTCTAAATCAAAAACACTTATCTCAATTCTCCAACGCGACTTACGATCAAGATGCAGATCTTTGTTAAGACTCTCACCGGCAAGACTATCACCCTCGAGGTGGAAAGCTCTGACACCATCGATAACGTTAAAGCCAAAATCCAGGATAAGGAAGGAATTCCTCCGGATCAGCAGAGGCTTATCTTCGCC | |||||||||
gi|114213827|gb|EC599161.1|EC599161 BB988-269.AD-F Thellungiella halophila pGAD-GH cDNA library Thellungiella halophila cDNA, mR TCCGGAGGGATTCCTTCTTTG EST sequence (targeted fragment marked with yellow): TCCCCCGGGCTGCAGGAATTCGGCACGAGGGACGAACTAAAAAAGATGCAGATCTTCGTGAAAACCCTAACCGGCAAGACCATCACCCTCGAGGTCGAGTCCTCAGATACCATCGACAATGTCAAGGCCAAGATCCAAGACAAAGAAGGAATCCCTCCGGACCAGCAGCGATTGATCTTCGCCG | |||||||||
gi|209479217|gb|BY805497.1|BY805497 BY805497 RTFL1 Thellungiella halophila cDNA clone RTFL01-08-H12 5' similar to AF542545.1 Nic TCCGGAGGGATTCCTTCTTTG EST sequence (targeted fragment marked with yellow): GGCAATTCGATTTTCTAAATCAAAAACACTTATCTCAATTCTCCAACGCGACTTACGATCAAGATGCAGATCTTTGTTAAGACTCTCACCGGCAAGACTATCACCCTCGAGGTGGAAAGCTCTGACACCATCGATAACGTTAAAGCCAAAATCCAGGATAAGGAAGGAATTCCTCCGGATCAGCAGAGGCTTATCTTCGCCGGAAAGCAGTTGGAAGACGGCCGGACTTTGGCCGATTACAACATCCAGAAGGAATCCACCCTTCACTTGGTCCTCAGGCTCCGTGGTGGTATGCAGATCTTCGTCAAAACCCTAACGGGAAAGACGATCACTTTGGAGGTCGAGAGTTCTGACACCATCGACAACGTGAAGGCTAAGATCCAAGACAAGGAGGGAATCCCACCAGACCAGCAGAGGTTGATCTTCGCCGGANAGCAGCTCGAAGATGGCCGTACTCTTGCGGACTACAACATCCAGAAGGAGTCGACCCTTCATCTAGTGCTCAGGCT | |||||||||
gi|209470456|gb|BY832714.1|BY832714 BY832714 RTFL1 Thellungiella halophila cDNA clone RTFL01-48-M15 5' similar to NM_102190.2 Ar TCCGGAGGGATTCCTTCTTTG EST sequence (targeted fragment marked with yellow): ATGGAGCAAAAACAGAGAGAAGAAAAATGCAGATTTTCGTGAAAACCCTAACGGGGAAGACGATAACACTAGAGGTTGAATCATCGGATACGATCGACAATGTGAAGGCGAAGATCCAGGACAAGGAAGGAATCCCGCCGGATCAGCAGCGACTGATCTTCGCCGGAAAGCAATTGGAAGACGGGAGGACACTGGCGGATTACAACATCCAGAAGGAATCGACGCTTCACTTGGTTCTCCGTCTGAGAGGAGGAGCGAAGAAGAGGAAGAAGAAGACGTACACGAAGCCGAAGAAGATCAAGCACAAGCACAAGAAAGTGAAGCTCGCGGTTCTGCAGTTTTACAAGGTGGATGGGACCGGTAAGGTTCAGAGGCTGAGGAAAGAGTGTCCTTCGGTTAGCTGTGGACCGGGGACTTTCATGGCGAGTCATTTCGATAGGCATTACTGTGGAAAGTGTGGAACCACTTATGTCTTCAAGAAGCCTGATGAAGAGTGATGATGATGATGATTCTTAAGTCGTCATTTTTCTCCTCTTTTTTTATACTTGCTGTTTTGAACTATCAGTGATTTTATTATGGAACTACATTGGTATGTTGGATTCTAAATTTTTGA | |||||||||
gi|114214103|gb|EC599465.1|EC599465 D05.B0305311.700 Thellungiella halophila pGAD-GH cDNA library Thellungiella halophila cDNA, TCCGGAGGGATTCCTTCTTTG EST sequence (targeted fragment marked with yellow): CCACCAAACCCAAAAAAAGAGATCCTAGAACTAGTGGATCCCCCGGGCTGCAGGAATTCGGCACGAGGCCTCGTGCCGAATTCGGCACGAGGCCGTGGTGGTATGCAGATCTTCGTGAAGACTCTTACCGGCAAGACAATTACCCTCGAGGTTGAAAGCTCTGACACCATTGACAACGTCAAGGCCAAGATTCAGGATAAGGAAGGCATCCCTCCGGACCAGCAGAGGTTGATCTTCGCCGGAAAGCAGCTTGAGGATGGTCGTACCTTGGCAGATTACAATATTCAGAAGGAGTCGACCCTTCATTTGGTGTTGCGTCTGCGTGGTGGCATGCAGATATTCGTGAAGACCCTTACAGGCAAGACGATTACTCTTGAAGTCGAGAGCTCCGACACCATTGACAATGTCAAGGCTAAGATCCAGGACAAAGAAGGCATCCCTCCGGACCAGCAACGTCTCATCTTCGCTGGAAAGCAGCTCGAGGATGGTCGTACCTTGGCGGATTACAACATTCAGAAGGAATCGACCCTTCACTTGGTTCTGCGTCTGC | |||||||||
gi|209478998|gb|BY830358.1|BY830358 BY830358 RTFL1 Thellungiella halophila cDNA clone RTFL01-45-F02 5' similar to NM_130278.1 Ar TCCGGAGGGATTCCTTCTTTG EST sequence (targeted fragment marked with yellow): GGGCTAGCCAGAAGCAAAAATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACAATCACCCTCGAGGTCGAGTCCTCCGATACGATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAAGGAATCCCTCCGGACCAGCAGCGATTGATCTTCGCCGGGAAGCAGCTCGAGGACGGACGCACCCTCGCCGACTACAACATCCAGAAGGAATCGACGCTTCACCTCGTCCTCCGTCTCCGTGGTGGCGCGAAGAAGAGGAAGAAGAAGACCTACACCAAGCCTAAGAAGATCAAGCACAAGCACAGGAAGGTCAAGCTCGCCGTTCTCCAGTTCTACAAGGTCGATGGCTCCGGCAAGGTCCAGCGTCTGAGGAAGGAGTGCCCTAACGCGACATGTGGTGCTGGAACCTTCATGGCTAGCCATTTCGATCGTCACTACTGTGGTAAGTGCGGTCTCACTTACGTCTACCAGAAAGAAGGAGGCGAAGAGTGATCTCGCTTTATCCTAACATCTCCATCTTGGATTACTGCTTTTCTTAATTTTTGGGAATTTTCGAAGTGTTTTTGCTGTTATGGATCTTATTATGTTGAACATCTATGGTTCTGGATTTCGTATCTAGAACCCGAATTTCTAGGTT | |||||||||
gi|114213994|gb|EC599328.1|EC599328 C02_XQ-plate-1 Thellungiella halophila pGAD-GH cDNA library Thellungiella halophila cDNA, mR TCCGGAGGGATTCCTTCTTTG EST sequence (targeted fragment marked with yellow): CAAAAAGAGATCCTAGAACTAGTGGATCCCCCGGGCTGCAGGAATTCGGCACGAGGCTCTTGCGGACTACAACATCCAGAAGGAGTCGACCCTTCATCTAGTGCTCAGGCTCCGTGGTGGTATGCAAATCTTCGTGAAAACTTTGACCGGAAAGACCATTACTTTGGAGGTTGAGAGCTCTGACACCATCGACAACGTGAAAGCCAAAATTCAAGACAAGGAAGGTATCCCCCCGGACCAGCAGAGGTTGATCTTCGCCGGCAAGCAGCTTGAGGATGGTCGCACCTTGGCCGATTACAATATCCAGAAGGAGTCAACACTTCACTTGGTCTTGCGTCTTCGTGGTGGTATGCAGATCTTTGTGAAGACTCTTACCGGCAAGACAATCACACTGGAGGTTGAGAGCTCCGATACCATCGACAACGTGAAGGCCAAGATCCAGGACAAGGAAGGTATCCCTCCG | |||||||||
gi|114214103|gb|EC599465.1|EC599465 D05.B0305311.700 Thellungiella halophila pGAD-GH cDNA library Thellungiella halophila cDNA, TCCGGAGGGATTCCTTCTTTG EST sequence (targeted fragment marked with yellow): CCACCAAACCCAAAAAAAGAGATCCTAGAACTAGTGGATCCCCCGGGCTGCAGGAATTCGGCACGAGGCCTCGTGCCGAATTCGGCACGAGGCCGTGGTGGTATGCAGATCTTCGTGAAGACTCTTACCGGCAAGACAATTACCCTCGAGGTTGAAAGCTCTGACACCATTGACAACGTCAAGGCCAAGATTCAGGATAAGGAAGGCATCCCTCCGGACCAGCAGAGGTTGATCTTCGCCGGAAAGCAGCTTGAGGATGGTCGTACCTTGGCAGATTACAATATTCAGAAGGAGTCGACCCTTCATTTGGTGTTGCGTCTGCGTGGTGGCATGCAGATATTCGTGAAGACCCTTACAGGCAAGACGATTACTCTTGAAGTCGAGAGCTCCGACACCATTGACAATGTCAAGGCTAAGATCCAGGACAAAGAAGGCATCCCTCCGGACCAGCAACGTCTCATCTTCGCTGGAAAGCAGCTCGAGGATGGTCGTACCTTGGCGGATTACAACATTCAGAAGGAATCGACCCTTCACTTGGTTCTGCGTCTGC | |||||||||
gi|209481834|gb|BY817439.1|BY817439 BY817439 RTFL1 Thellungiella halophila cDNA clone RTFL01-26-C22 5' similar to NM_116090.2 Ar TCCGGAGGGATTCCTTCTTTG EST sequence (targeted fragment marked with yellow): GGCAGCCGAGATACGCTTTTGCCGCAAAGATGCAGATCTTTGTGAAAACCCTAACGGGGAAGACAATAACCCTTGAGGTCGAATCGTCAGACACCATCGACAATGTGAAAGCGAAGATCCAAGACAAGGAAGGAATCCCACCGGACCAGCAGCGATTGATATTCGCCGGAAAACAGCTGGAAGACGGGCGCACACTCGCCGACTACAACATACAGAAGGAGTCGACGCTTCATCTCGTGCTCCGTCTTCGTGGTGGTGCGAAGAAGAGGAAGAAGAAGACGTACACGAAACCGAAGAAAATCAAGCATAAGCATAGGAAGGTGAAGCTCGCTGTTCTCCAATTCTACAAAGTCGATGGATCTGGTAAGGTTCAGCGTCTCAGGAAAGAATGCCCAAACGCAACTTGCGGTGCTGGAACGTTCATGGCTAGTCACTTCGATCGCCATTACTGTGGCAAGTGTGGTCTCACTTACGTCTACCAAAAAGAGGGAGCTGAGGAATGATACCTTAAATCGGTAGATGTATCACTCTCTCTCTCTCTTTCTCTATCTCTTAAGAACTGGTTACGATTTGGTACTTTTATAAGTTTTGTTGGTTGTAATGGATTCGGTGTTAAACATCTTTTGTTCTGGATTTCTTATCTGGAGTGAT | |||||||||
gi|114213994|gb|EC599328.1|EC599328 C02_XQ-plate-1 Thellungiella halophila pGAD-GH cDNA library Thellungiella halophila cDNA, mR TCCGGAGGGATTCCTTCTTTG EST sequence (targeted fragment marked with yellow): CAAAAAGAGATCCTAGAACTAGTGGATCCCCCGGGCTGCAGGAATTCGGCACGAGGCTCTTGCGGACTACAACATCCAGAAGGAGTCGACCCTTCATCTAGTGCTCAGGCTCCGTGGTGGTATGCAAATCTTCGTGAAAACTTTGACCGGAAAGACCATTACTTTGGAGGTTGAGAGCTCTGACACCATCGACAACGTGAAAGCCAAAATTCAAGACAAGGAAGGTATCCCCCCGGACCAGCAGAGGTTGATCTTCGCCGGCAAGCAGCTTGAGGATGGTCGCACCTTGGCCGATTACAATATCCAGAAGGAGTCAACACTTCACTTGGTCTTGCGTCTTCGTGGTGGTATGCAGATCTTTGTGAAGACTCTTACCGGCAAGACAATCACACTGGAGGTTGAGAGCTCCGATACCATCGACAACGTGAAGGCCAAGATCCAGGACAAGGAAGGTATCCCTCCG | |||||||||
gi|209463269|gb|BY806855.1|BY806855 BY806855 RTFL1 Thellungiella halophila cDNA clone RTFL01-10-H17 5' similar to NM_116771.2 Ar TCCGGAGGGATTCCTTCTTTG EST sequence (targeted fragment marked with yellow): GACAATTCACAATTCAGTTTCCGAAACTTAAAATCAACTTCTCAATCCTCTCGTAATCGCGAGTTATCATCAAGATGCAGATCTTCGTTAAGACTCTCACCGGAAAGACTATCACCCTTGAGGTGGAAAGCTCCGACACGATCGATAACGTTAAAGCAAAGATTCAGGATAAGGAGGGAATCCCACCGGATCAGCAAAGGCTTATCTTCGCCGGAAAGCAGCTGGAAGATGGCCGGACCTTGGCCGATTACAACATCCAGAAGGAATCCACCCTCCACTTGGTCCTCAGGCTCCGTGGTGGTATGCAGATCTTCGTCAAAACCCTAACGGGAAAGACGATCACACTCGAGGTGGAGAGTTCTGATACCATCGACAATGTCAAGGCTAAGATCCAAGACAAGGAGGGAATCCCACCGGACCAGCAAAGGTTGATCTTTGCCGGAAAGCAGCTCGAGGACGGTAGAACTCTCGCTGACTACAACATACAGAAGGAGTCGACCCTTCATCTAGTCCTCAGGCTCCGTGGTGGTATGCAGATCTTCGTTAAAACTTTGACTGGAAAACCATCACTTTGGAGGTCGAGAGTTCGGACACTATTGACAACGTTAAGGCTAAGATCCAGGACAAGGAGGGAAT | |||||||||
gi|209478159|gb|BY812961.1|BY812961 BY812961 RTFL1 Thellungiella halophila cDNA clone RTFL01-19-I21 5' similar to NM_115119.2 Ar TCCGGAGGGATTCCTTCTTTG EST sequence (targeted fragment marked with yellow): GACGGGATAGAAGACGAACTAAAAAAGATGCAGATCTTCGTGAAAACCCTAACCGGCAAGACCATCACCCTCGAGGTCGAGTCCTCAGATACCATCGACAATGTCAAGGCCAAGATCCAAGACAAAGAAGGAATCCCTCCGGACCAGCAGCGATTGATCTTCGCCGGAAAACAGCTCGAAGATGGCCGTACTTTGGCTGACTACAACATCCAGAAAGAATCCACGCTTCATCTTGTGTTGAGGCTCAGAGGAGGTATCATTGAGCCTTCTTTGATGGCGTTGGCTCGTAAGTACAACCAAGACAAGATGATTTGCCGCAAGTGTTACGCTCGTCTTCACCCAAGGGCCGTGAACTGCAGGAAGAAGAAATGTGGCCATAGCAACCAGTTGAGGCCTAAGAAGAAGATCAAGTAGACTCATTTCAACAATCTGATCTTGCT | |||||||||
gi|209453304|gb|BY818322.1|BY818322 BY818322 RTFL1 Thellungiella halophila cDNA clone RTFL01-27-I14 5' similar to NM_122069.2 Ar TCCGGAGGGATTCCTTCTTTG EST sequence (targeted fragment marked with yellow): TTAGGTGACACTATAGAACCAGAGTTCCGTCGCAGCCGGGATTTGGGTCGCAGTTCTTGTTTGTGGATTGCTGTGATCGTCACTTGACAATGCATATCTTCGTGAAGACTCTGACTGGTAAGACCATCACCCTCGAGGTTGAGCCCAGTGACACCATCGAGAATGTCAAGGCTAAGATCCAAGATAACGAAGGCATCCCTCCTGACCAGCACAGGCTGATCTTTGCTGGAAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAACATCCAGAAAGAGTCCACCCTGCACCTGGTGCTCCGTCTCAGAGGTGGGATGCAAATCTTCGTGAAGACTCTCACTGGCAAGACCATCACCCTTGAGGTCGAGCCCAGTGA | |||||||||
gi|209463269|gb|BY806855.1|BY806855 BY806855 RTFL1 Thellungiella halophila cDNA clone RTFL01-10-H17 5' similar to NM_116771.2 Ar TCCGGAGGGATTCCTTCTTTG EST sequence (targeted fragment marked with yellow): GACAATTCACAATTCAGTTTCCGAAACTTAAAATCAACTTCTCAATCCTCTCGTAATCGCGAGTTATCATCAAGATGCAGATCTTCGTTAAGACTCTCACCGGAAAGACTATCACCCTTGAGGTGGAAAGCTCCGACACGATCGATAACGTTAAAGCAAAGATTCAGGATAAGGAGGGAATCCCACCGGATCAGCAAAGGCTTATCTTCGCCGGAAAGCAGCTGGAAGATGGCCGGACCTTGGCCGATTACAACATCCAGAAGGAATCCACCCTCCACTTGGTCCTCAGGCTCCGTGGTGGTATGCAGATCTTCGTCAAAACCCTAACGGGAAAGACGATCACACTCGAGGTGGAGAGTTCTGATACCATCGACAATGTCAAGGCTAAGATCCAAGACAAGGAGGGAATCCCACCGGACCAGCAAAGGTTGATCTTTGCCGGAAAGCAGCTCGAGGACGGTAGAACTCTCGCTGACTACAACATACAGAAGGAGTCGACCCTTCATCTAGTCCTCAGGCTCCGTGGTGGTATGCAGATCTTCGTTAAAACTTTGACTGGAAAACCATCACTTTGGAGGTCGAGAGTTCGGACACTATTGACAACGTTAAGGCTAAGATCCAGGACAAGGAGGGAAT | |||||||||
gi|209469645|gb|BY807551.1|BY807551 BY807551 RTFL1 Thellungiella halophila cDNA clone RTFL01-11-J13 5' similar to NM_116744.2 Ar TCCGGAGGGATTCCTTCTTTG EST sequence (targeted fragment marked with yellow): GACAATTCGATTTCCAAATATCAAAAATCAATCTCACCAATTCTCTTTTCTTAATAGCGATTTACGATCAAGGTAAATTCCGTGCTCCTTCCTCGATTACGTGTTTCGTTCGATCGCAGCAACTTTCTCTGCTCTGGATTCGATTTGATTCTGTATTCGATTCGATGCAGATCTTTGTTAAGACTCTCACCGGCAAGACTATCACCCTCGAGGTGGAAAGCTCTGACACCATCGATAACGTTAAAGCCAAAATCCAGGATAAGGAAGGAATTCCTCCGGATCAGCAG | |||||||||