| mature miRNA: TTTTGCTGCCCTTGTTTTTAA species: Triphysaria versicolor database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|159065853|gb|EX999317.1|EX999317 CBAH1088.g1:P T. versicolor peonidin treated reverse SSH library Triphysaria versicolor cDNA TTTTGCTGCCCTTGTTTTTAA EST sequence (targeted fragment marked with yellow): CATCGTCGCCGCTGTGTTTCGGATTATCCATCCGAACAATCTCTCAGAAAACCTAATTGTGGCCGATTTATCATTTATGCATTTTTCCAAAACAAATAAGAAACAATAAGACGCTCAGTTACGAACCAAACCTCAATCTCCACTCGCCGCCGCACATCCGGTCTTGCCGCCTCTGCTTTTCTGATCAACCAACATATCGGAATGAGTCGACCGCCTGTCAATCCTTCCCTCCTTAAGAGGAAAAGACCCGAAACCCAACTGCCCGGCCCGGTCGGAGATGCCGAAAGCACAATCCTCAGATTGATCAAGAACACAGGGGATTCAGGCATCTTGTTAAGAGATATCAAAAGAGAATCCAGAATTCCAGATAATATGTGCACCAAAGCTCTAAAGTCTTTGTCGGTTAAGAATATGATAAAGCAAGTGGTAAGTATTAAAAACAAGGGCAGCAAAATCTACATGGCTGTTGAGTTTGAACCGTCTAAGGAACTCAGTGGCGGCGATTGGTACCTGCCCGGGCGGCCA | |||||||||
gi|159054414|gb|EX991559.1|EX991559 CBAF2976.b1:P T. versicolor host exudate reverse SSH library Triphysaria versicolor cDNA, mR TTTTGCTGCCCTTGTTTTTAA EST sequence (targeted fragment marked with yellow): TGATTTTTTTTGTGAATGATGACGTGCTTTTCGCACCAACATGATGAGGAGCGTTTTTTTATATGCCCCCTTTTTAAAAAAAGGGGCGGCAAATTCTCCCTTGGGAGGGGGGCCGGGGCAGAGATATCATCGGGGTTGATAAATTCGTGTTCGGGAAGATCTGGATGCCCCGATTCCTTGCTCCACAGGGCATTTTACTAAG | |||||||||
gi|159068583|gb|EY003621.1|EY003621 CBAH3350.b1:P T. versicolor peonidin treated reverse SSH library Triphysaria versicolor cDNA TTTTGCTGCCCTTGTTTTTAA EST sequence (targeted fragment marked with yellow): GATTATCCATCCGAACAATCTCTCAGAAAACCTAATTGTGACCGATTTATCATTTTATGCATTTTTCCAAAACAAATAAGAAACAATAAGACGCTCAGTTACGAACCAAACCTCAATCTCCACTCGCCGCCGCACATCCGGTCTTGCCGCCTCTGCTTTTCTGATCAACCAACATATCGGAATGAGTCGACCACCTGTCAATCCCTCCCTCCTTAAGAGGAAAAGACCCGAAACCCAACTGCCCGGCCCGGTCGGAGATGCCGAAAGCACAATCCTCAGATTGATCAAGAACACAGGGGATTCAGGCATCTTGTTAAGAGATATCAAAAGAGAATCCAGAATTCCAGATAATATGTGCACCAAAGCCCTAAAGTCTTTGTCGGCTAAGAATATGATAAAGCAAGTGGTAAGTATTAAAAACAAGGGCAGCAAAATCTACATGGCTGTTGAGTTTGAACCGTCTAAGGAACTCAGTGGCGGCGATTGGTA | |||||||||
gi|159068324|gb|EY003497.1|EY003497 CBAH3285.g1:P T. versicolor peonidin treated reverse SSH library Triphysaria versicolor cDNA TTTTGCTGCCCTTGTTTTTAA EST sequence (targeted fragment marked with yellow): GGCTCGAAGCCCATTCTTCCATATATGAACCTACTACTGAAGAGTGGATGAGACCCGCCCCAAGCGCCGCTTACATAATGGGAATTCCGAGGGTGAATTTTTTTAAAAAATGGGCAGTAAAAAAAAGAATTGAACGTTGTTATGTAGAAACCTATTGACCACTCTCTGGTAAAAAAAAAACATAATTTAA | |||||||||