| mature miRNA: TACTCCCTCCGTCCCATAATG species: Triticum turgidum subsp. durum database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|197667131|gb|FL577935.1|FL577935 KL-232 KI7LS Triticum turgidum subsp. durum cDNA, mRNA sequence TACTCCCTCCGTCCCATAATG EST sequence (targeted fragment marked with yellow): ACATTTAAGGTAGAACAAGGTTTGCAATAAACATCATTCAATCTTTAGAACAAAGAAGAGGTGCCTCAGTGCATGGATACATGTGTTCCTCTGCTTGCGATTTTGCAGAGGCAATGGGCACTGGGTCTTGCATTTCCACATTGAGGCGGAGTCTTACAACATAAATTTAAATGCAGAGAACAAAGCAGGAACTACAAAGACGGGTTTATGCAAGAGAAAGGAAGGACACTGACACAATATTTTTGAGTAATAATATGTATTCCCTCCATCCGAAAATACTTGTTGGAGAAATGGATGTATCTAGACGTATTTTATTTCTAGATACATCCATTTTTATGCATTTCTACGACAAGTATTTCCGGACGGAGGGAGTATAAAGTTTATCAACGAAAGCTTAGGACAGCTCGAGCAAGAAAAGTAGAAAAGAAGTCATGATACAATCCACCAGGCCAGTCATCGGTCAGCATTTATCTGATAAGTA | |||||||||
gi|164703564|gb|FD473701.1|FD473701 P1_H11_SP6_092 frumisis1 Triticum turgidum subsp. durum cDNA clone P1_H11_SP6_092, mRNA sequ TACTCCCTCCGTCCCATAATG EST sequence (targeted fragment marked with yellow): TCGACCTGCAGGCGGCCGCGAATTCACTAGTGATTTCGAGCGGCCGCCCGGGCAGGTACAAAGTTAGTATAAAGTTGGGTCATCTATTTTGGAACGGAGGGAGTAGCATGGAAGGTTTCACGTCAGCATCCAGAACACCCTTGGCCTAGTAGCCCTGCTTCATCCTTTCCTCGAATCGGGTCTTCTCATCCTCAAAAGCTTGCTTCAGGTTCTCAAGCTCCTTGTCTAGATCATTGATTGCCTACCTCGGCCGCGACCACGCTAATCGAATTCCCGCGGCC | |||||||||
gi|164700153|gb|FD472882.1|FD472882 P2S_F03_SP6_027 frumisis1 Triticum turgidum subsp. durum cDNA clone P2S_F03_SP6_027, mRNA se TACTCCCTCCGTCCCATAATG EST sequence (targeted fragment marked with yellow): TCGACCTGCAGGCGGCCGCGAATTCACTAGTGATTTCGAGCGGCCGCCCGGGCAGGTACAAAGTTAGTATAAAGTTGCGTCATCTATTTTGGAACGGGGGGAGTAGCATGGAAGGTTTCACGTCAGCATCCAGAACACCCTTGGCCTAGTAGCCCTGCTTCATCCTTTCCTCGAATCGGGTCTTCTCATCCTCAAAAGCTTGCTTCAGGTTCTCAAGCTCCT | |||||||||
gi|49603475|gb|AJ716893.1|AJ716893 AJ716893 Triticum turgidum subsp. durum etiolated seedling 20 days Triticum turgidum subsp. d TACTCCCTCCGTCCCATAATG EST sequence (targeted fragment marked with yellow): GTATTTATCTGTGTCATAAAAAAGTGATATTTACCTATATACTATTCCTCCGTCCCATAATAAGTGTCTCAACTTTGTAGTAACTCTAGTACAAAGTTGTACTAAGCTTGAGACAGTTATTTTGGGACGGAGGGAGTACTATATGGCTCTCGTAGCCGTACGTGTGACCTACTACATACCCTAGCTACTGCATGTATTGTTCTAAAAAAAGGCTAATGCATGTACATGCAGTTAAATAAAATGGGCATCCTGTACAGTAAGCTGGAGTACTTAGCACTGGCTACGTACTCCATGCGATGGATAGATGGATCCCTGGCCTTTGCATGATCCCTGTATTTCATTGTACTGTATAATGTATCATATCTGTTGTTTGTACAAAAAAAAAAAAAAAAAAACTCGAG | |||||||||
gi|164699858|gb|FD468710.1|FD468710 BOT_8_6a BOT Triticum turgidum subsp. durum cDNA clone BOT_8_6a, mRNA sequence TACTCCCTCCGTCCCATAATG EST sequence (targeted fragment marked with yellow): CGCCATGGCGGCCGCGGGAATTCGATTAGCGTGGTCGCGGCCGAGGTACACGTTGTCCACACGACATGTCGTTGGCCAGAACTTGGCACCCCGAAGCCACGCCGCCGGGAACGCAGCATACTCCCTAGAGTATGGCTTAGTCCATGCGTCACCCATCAGGAGTTGGGGTGGGTGAGGAGCGCCCTTCAGGACATTGTTGTGCGCATCTGCTTTGCCATTTTCTACCTGTGCAATTTCCTCCCTGATAGAGATAAGGGCATCACAGAACCTGTCTAGTTCAGCCTTGCTTTCACTCTCAGTGGGTTCAATCATAAGTGTGCCTGGAACAGGCCATGACATGGTTGGTCCATGGAATCCATAGTCCATCAAGCGCTTCGCCACATCCTCGGGCTCAATACCGGCAGTTGCCTTGAACCCTCTTAGATCAATGATGAATTCATGGGCAACAGTTCCATTGACTCCACGGAAAAGAACCGGGTAGTGTTTCTGCAAAATTCGTTACATATTACTTCCTCCGTTCCTAAATAATTGTCTTTCTAGAGATTTCAACAAATGACTACATACGGAGCAAAATGAGTGAATCTACACTCTAAAACATGTCTACATACATCCGTATGTTGTAGTTCATTTGAGATAGCTAGAAAGACAATTATTTAGGAACGGAGGGAGTAGAAAAGTAGTTCAACAATAAATATATTTTTAGTAAAGGCCATGCAATGTATGACCATGAGTAACATCA | |||||||||
gi|39730303|gb|AJ613376.1|AJ613376 AJ613376 Triticum turgidum subsp. durum etiolated seedling 20 day Triticum turgidum subsp. du TACTCCCTCCGTCCCATAATG EST sequence (targeted fragment marked with yellow): GCGAGGTCGAGGAGCAGGGATCAAGCAAGACAAGTCTTTTAGGGAGCCTGAAATCGCTTGCTTCTGGGATCAGAAACTTCTGGAGAAATCTGTAAATTTGTCTCATTTTGGCTTGGAGCCAACACACATGAAGTCCCCTTATCTATCAATTTTATGAGCCTGGAGCAGCTTGTGAAGCTTTGTGAAGGCTACAGAGTTAATGATCTAAGTGCCCCTTGTTTAGCGTTTTTTGCGAGCCTGAAGAAAGCTGTAAAGTTTTATTTTTGCACTACGGAACATTGGTCTGACTCCCGCAGTGTCACGTTACTTATAAGCTACTCCCTCCCGTTCCAAATTACTCGTTGCAGAAATGAATGTATCTAGAACTAAAATACATCTAAATACATCCATACCTGTGACAAGTAATTTGGAACGGAGGGAGTAGATAAGAGCATATTTGGGTGCATCTAATGTTAACAGGCCGGTCTGTCATAGTGCAATGATGTGATGCTTATTGGCGACAGGGCGGTCCTATTTGCTTTGCTTGTTGTCAAAATGTACTAGTTGAAGATAGTATGATCGGTAACTTGGGACATAANAAAAAAAAAANAAAAA | |||||||||
gi|39727580|gb|AJ610653.1|AJ610653 AJ610653 Triticum turgidum subsp. durum etiolated seedling 20 day Triticum turgidum subsp. du TACTCCCTCCGTCCCATAATG EST sequence (targeted fragment marked with yellow): GAATTCGGCACGAGGCTGGTTTGAACTCCATGTTAGGATACACTACGTGACGTTTCTGTCTTATCTAAACCGAGCTCTGCCTTCTGTTACCAGTTGAGTTTATGAGTTACGGGGTCCACAGGGCCAACCTTAGGCATCGATGCTATTTTGCCTAAGATATACTCCCTTCGCTCCAAAATAGATGACCCAACTTTGTACTAAAGTTAATACAAAGTTGGTTCATCTATTTTGGAACGGAGGGAGTACGTATGACTTTCTGCATGGTCAGTTCTTTTTTCTGGGTTTAATCTGAATGGTATCCCCGTTGGTATTGACTTCTTGGAATGATTTATTTATCTATGGCAAAAAAAAAAAAAAAAAAAACTCGA | |||||||||
gi|49603812|gb|AJ717230.1|AJ717230 AJ717230 Triticum turgidum subsp. durum etiolated seedling 20 days Triticum turgidum subsp. d TACTCCCTCCGTCCCATAATG EST sequence (targeted fragment marked with yellow): GAATTCGGCACGAGGCCAAGGCTCCGCCCGGCAACCGGAGGCGACGCACCACCGCCTACACCTCCACGAACTGCTCCTCCGGCGGGGGCAACGGCGACCGGGGTCATCATCCTCCCTCTTCCCGGATCTCGTCTCTGCCCAGAGATCGAAGGACCTTCTCTGTTGTCTGAAATTTGTACCAAGTGAGCAGCTGTACTGAAGAACATCGAACGTTTTGCAGTGCATCTAACTAACCTGACCTCACAAGTGCTGATTTGTAGGTCTGCTCTGAAATTAGAAGTTGGCTTTATCTGAAGACCTTGTGTAAAATTGCTTGGTGCCTTTCGAAAGATTTCACTCAGAGCAAGAAAGGTACTCCCTCCGTCCGGAAATACTCGTCGGAGAAATGCATAAAAATGGATGTATCTAAAACTAAAATACGTCTAGATACATCCATTTATCCGACAAGTATTTTCGGACGGAGGGAGTATGTGACACAGACATCCTTTTGACATGGTCATTGAGGAAGCTTAAATTATGCAAAACTACTGCTCTTGTGATGTTATTTTTCTGTGCCTAGTAATGAAAGTGTTCTTATTTTAGTATATGAGAAAATTGTTGCTCTTAATTATGTATGTAGATGGCACAATAGAGATGGTATTATCTNCTGTATTCACTCCTGAGCCTTTCTTTTGCAGCATNAGAGATGGCATTATTAGTGGCTTTATTTATAAAAAAAAAAAAAA | |||||||||
gi|164701047|gb|FD473448.1|FD473448 P12S_A07_SP6_049 frumisis1 Triticum turgidum subsp. durum cDNA clone P12S_A07_SP6_049, mRNA TACTCCCTCCGTCCCATAATG EST sequence (targeted fragment marked with yellow): ATGTGTATGACAGCTACTCCCTCCGTCTCAAAATATAAGAGCGTTTTTGGCACTACACTAGTGTAAAAAATGCTCTTATATTTTGGGACGGAGGGAGTATGTTTGTTTGGAG | |||||||||
gi|49603782|gb|AJ717200.1|AJ717200 AJ717200 Triticum turgidum subsp. durum etiolated seedling 20 days Triticum turgidum subsp. d TACTCCCTCCGTCCCATAATG EST sequence (targeted fragment marked with yellow): GGTTCTGAACATTGTAGCGTTTTGTCAATGTTGTTACTTTTTGCTACAAAGTATGTGGAATGGCATCTTTATGATGTTCCTGTTTGAGATAAAACTACATGTTGTCTCTATCGTGCAAGACAAATGCTACAAAAAAAAAGCATTGTATACAGTTGTCCAATGATAAAATGTACTCCCTCCGTCCCATAATGTAGTGTCAAAAAACGTCTTACATTATGGGACGGAGGGAGTATATTTCAAAAATTGTAGAGCAATTAGTTCTAATGAAACATTGGCACNTTGGTCCTGATTATATATCAGATGCAGATATTCGGATTTTATTTTTGAATCTGATCTTACTTGCGGGGATGGACGTATCACGTATGGGTTCAGGTAAAACTGTTGCAACTTCTGATTGAAGAAGCTAAATTGACATGTCACAGCTCCCAGCATGTACTTCCAATAAGATGCATATCATGGTATTGGGATATATCAGCGTCTGATATATATGTGCATAAGTTGGCAGGGATATATCAGCGTCCGATATAATATATGTGCATCTGTTGGCAGAAATGTCAGATCCGCAAACTGTGATTCACCACTNGTTTTATTTTATTTTTCCTCANCATG | |||||||||
gi|110224256|gb|AM285483.1|AM285483 AM285483 Triticum turgidum subsp. durum etiolated seedling 20 day Triticum turgidum subsp. d TACTCCCTCCGTCCCATAATG EST sequence (targeted fragment marked with yellow): GAATTCGGCACGAGGCAGACAACCAAACTTCTATTTTTGAAGCAATTGCAATTTTGTAGCTTACGTTTCCACATTTTACCTGGTTGGATTCATGTTTTTGTTTATCTAGGATCTTAACCAATGGAAAATAGTTTATTATGCGTTGTTGCCATTTTCTGTGTCAGCTTCGCCATGTTTTTTTGTTAGTAATTGAAACTGCATGAACTTCATTTATGTTATATTTTGGTAGTGAATCCTCTCAGCTGTACAAGTTTCACAAGCAAAGTTCATGCACATGTCCATTATTTATGAGTTCGGGCGAATTGTTTTTGTTGTGGTTGCCTTCTTTCAACTCTTCCTCGGCCATATTTGGAATTATAGGGTACCTAACCTCCATCGTCCTATTTCTGTTGCTGGACGTGACTTCAGGATGGGACCAAACATTCCTGGGCAATATCAATAGGTCCACGACAAAATCTCTATTAGGTGCTTCTATTCCTTTACCCATGTCTCTTTTGGTGCTTCTATTCCTTTACCCCTGTCTCTTTTGTCTCTTTTGATTTTGATTTCCTAATGTATGGTTTATCTGACTACAATGTACTACTCCCTCCGTTTTAAATTAGATGACTCAATTCTGTACTAACTTTAGTACAAAGTTGGGTCGTCTATTTTGGAACGGAGGGAGTAGGTCTGAGAAAGAAGACAAATAGGA | |||||||||
gi|39730663|gb|AJ613736.1|AJ613736 AJ613736 Triticum turgidum subsp. durum etiolated seedling 20 day Triticum turgidum subsp. du TACTCCCTCCGTCCCATAATG EST sequence (targeted fragment marked with yellow): GAATTCGGCACGAGGACGACCTGTCGCCCCATCGCCTGTGTGACTACCTGTACACCCTATCTGAAAGATTCTCACAATTTTACACCAACTGCCAGGTTGTCGGGTCACCGGAGGAAACGAGCCGCCTGTTGCTGTGCCAAGCGTCGGCAGTCGTCATGCGGCAATGCTTCCACCTGCTGGGCATAACACCAGTGCACAAGCTATAGAAGTCGATGGATGCTCTAGTTAGTAAATTATCATTGAACTCATCTAACATGATAGGTTTAGTGGACGCGATCTTGTAAATATTACTCCCTTCGTCCCACAGTATAACTTGAAAAAGGATCTTATATTGTGGGACGGAGGGAGTAGTTGCAAATATCAGTATGTCGTCGATGCCACATAGTAGCTCGCAAGTATGTTTGTCTTTCCTACATCAGCATCAGCATAATAGCAAGGCTGTGGGATTTTATTGTTTGAAACTTTGGTGTGTTCTGGATATATGTTAGTTATAAGGGCAATACAAACGTTCACGAAAAAAAAAAAAAAAAAAAACTCGAG | |||||||||
gi|9427023|gb|BE429180.1|BE429180 MTD015.C06F990621 ITEC MTD Durum Wheat Root Library Triticum turgidum subsp. durum cDNA clone TACTCCCTCCGTCCCATAATG EST sequence (targeted fragment marked with yellow): GCAGACGAGCCCTAAGAAGACGTTCCGATGCGCCGATGCACGCGTCGACGACGGCACGCCCTGCAAGCCCTGCAAGAAGCACTGATAGCACATGCTCAGAACATAAGATGTTGCACCGAGAATAAAAGCTCGGATGGGTTGAGCAGAGCCGTTGTGGTTGTACGTACACGTGTTCCATGCCCAACAACAATTGTTGTTGTCATCGTCGTCGTTATGCTTTTATCTCTCTCCAACAAAAGCTGTGGTCGTTGCTCCCTGAATAAACACATATTCCCTTCGTTTCATAATGTAAGACATTTTTTGGCACTAGTGTAGTATCAAAAAACGTCTTATATTATGGGACGGATGGAGTACTTGTGTGTCAGTGTATTGCGTCTCTGCTCAATCAAATAAAAA | |||||||||
gi|164705904|gb|FD473365.1|FD473365 P4S_B05_SP6_041 frumisis1 Triticum turgidum subsp. durum cDNA clone P4S_B05_SP6_041, mRNA se TACTCCCTCCGTCCCATAATG EST sequence (targeted fragment marked with yellow): GTCGACCTGCAGGCGGCCGCGAATTCACTAGTGATTTCGAGCGGCCGCCCGGGCAGGTACAAAGTTAGTATAAAGTTGCGTCATCTATTTTGGAACGGAGGGAGTAGCATGGAAGGTTTCACGTCAGCATCCAGAACACCCTTGGCCTAGTAGCCCTGCTTCATCCTTTCCTCGAATCGGGTCTTCTCATCCTCAAAAGCTTGCTTCAGGTTCTCAAGCTCCTTGTCTAGATCATTGATTGCCTACCTCGGCC | |||||||||
gi|164705307|gb|FD474675.1|FD474675 2P6S_G05_SP6_036 frumisis2 Triticum turgidum subsp. durum cDNA clone 2P6S_G05_SP6_036, mRNA TACTCCCTCCGTCCCATAATG EST sequence (targeted fragment marked with yellow): TCGACCTGCAGGCGGCCGCGAATTCACTAGTGATTCGGCCGCCCGGGCAGGTACACTTATTTTGGGGAAAATCATGGAGCCAGATGCACACTCTTTGGCGGACGGAGGGAGTAGGCCAGTATGCCTTTTTATCAGATGCTTTTCTTCCCTCCCTCACAGCTGCTCATCAAAGTTTGGTCCTCTTCATATGCTTTTCTTGCCTCCCTCACAGCTGCTCATCAAAGTTTGGTCCTCTTCATATGCTTTTCTTGCCTCCCTCACGTAATGGGCCAAGAGTCTTAACATCCTATTCCTCAGACGACGGGCCCACACCATTTCTTTGAAGACAGTCTTGCAAGACACCTTCAATAGTTTACCTTCGTATTTAGGTCCATCATTCACCAACTTGGAATACTCCTCTGCTGAGAAAACCTCAAGAGGAATTCCAGGAAGTTCCTCTGTAGGGTAACATAATAACTTGAGAGCAGTCACTAGTTTAATTAAACACCAATCCTGCGAGTCAATGTCTGAAATCTTCTTAAGGTGCTCACCAG | |||||||||
gi|9426355|gb|BE428512.1|BE428512 MTD007.H02F990616 ITEC MTD Durum Wheat Root Library Triticum turgidum subsp. durum cDNA clone TACTCCCTCCGTCCCATAATG EST sequence (targeted fragment marked with yellow): AGGAGATTTGACAAACAGGTGCGATATGAGTCCCGCAAAGCTCGTGCGGACAGCAGGTTGAGAATCAAGGGCCGTTTTGCAAAGGCAAATCAGAGTTAAGTCTTGACTTTGCAGTATACTATTTTGCATCTTGGACAGAAGGAAGGACACTAATTAGGAGTGAGTGCAGATGATACATAAGGCGTGAACATTTTGTTGGTCTTCAGTTGGGCAGATGTTCATGTACAATCTGAATAATGTACTCCTTCTGTCTTAAAATAAGTGTCTCAAGCTTAGTACAATAAAAATTTATACTAAACTTGAGACACTTATTTTAGGACGGAGGGAGTACGTTGCAACATATGGGCTATATTAATGTTTTGGGGGGAGTTGTTAGTCCAACCCTTGTATATAGTT | |||||||||
gi|49603162|gb|AJ716580.1|AJ716580 AJ716580 Triticum turgidum subsp. durum etiolated seedling 20 days Triticum turgidum subsp. d TACTCCCTCCGTCCCATAATG EST sequence (targeted fragment marked with yellow): GAATTCGGCACGAGGGTTGGAGTGGATCGCGGCACACGACGTCCAAGCGATGGGGACGGCACGTAACGCCGGGTTTTGTTTGACCACGGGTTGGTCGGCCCACCAGACCACGGGTTGCCACCTGTTATTGGTCGCATGCATGTTGAATTACTGTCGCCATGGTTCAGTTGTACAGTGCCAAGCAATTTATTTCAGTAAGAAACAAACAAAAGCAGATGAAATTCTTGTTCAGGGAAATAACTAGACAAAAAACAAACCTAAAAATAAAAGTGAGAATTCAGAAGATCATGCACACAGCTAAACTTGATGCCAGGTAAATCACACGTAGTCTCGTTGATAGTCAATACAGCTCGTTGTCAAGTTGACACCTCCACCACACTAGTTGAACGCCCTTTGACATTTTTGTTTCCTAATTGCACACATAAATCTACTACTCCCTCAGTCTGAAAATACTTGTCATCAAAATGGATTAAAAAGAATGTATCTAGACGTATTTTAGTTCGAGATATATCATCTTTTATTCATTTTGATGACAAGTATTTTCGGACGGAGGGAGTATATCACTAGGCTTCTTAGGGTAAATGGTTCATGAATCAATTGAGGCTGGTGATTTTAGATTTGCATCCTTCGATTTTGACTTGGTCTCCTTACAGCGTCTACATTATTGGATAGCAAATCCGATCCCTCAAATGCCCGAGGAGACGCCCACGCCCCAAAT | |||||||||