| Basic information from miRBase |
| hairpin accession number: MI0002216 |
| Located between position 12933923 and 12934077 on chromosome scaffold_16 strand + |
| mature miRNAs for MI0002216: |
| ptc-miR164e (MIMAT0001922): TGGAGAAGCAGGGCACGTGCA |
| References |
| [1]Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL, Plant Cell. 17:2186-2203(2005)., "Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa that are absent from Arabidopsis" |
| [2]Zhang BH, Pan XP, Wang QL, Cobb GP, Anderson TA, Cell Res. 15:336-360(2005)., "Identification and characterization of new plant microRNAs using EST analysis" |
| [3]Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants" |
| [4]Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm, Science. 313:1596-1604(2006)., "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)" |
>promoter (3kb upstream pre-miRNA, by PMRD):
AAATGACATGAATCACAAGTGATGATTTTTGTATCCAAATTAGACATTAATTTGGTGAGAAAAATTTCAGAGGGATTTGC
TAAATGTTGATGCCATAAAACTTGATCCTGACAAAAATAGAAAAAAACCAGAAACTTGAATAAACTTATTTCTCCGagga
ttgcttgaaaaataatgaagtcattgaaaaaaaaacccttctccaatcatcttcttggtgatgaggtcctgaaaaataac
ccggtgtgaatcaaatataactagacaacttaaagtttgagtgagttttccaatggaaagcaattggaaaggaaaataaa
gaacatatagaacctaagattctacattttcagaaaacaatttaatctttattttactcttaacaaaaacatgttttata
tttgcaatagatacataagttggaatagaaatgtttttcaaaattatataaactggtcacttTGTTTGTTATATGATTAG
GAGCACCCAAATCACCAACCCAAAAACTATGCTCAATACTAGCAACTAAAGCAGTTTTAAATGCAGTCAAAATACCTTTT
ATATGTTTTTATGATAGATGAGTACAGTTTTTCAAGAAACAAACAATCTTACCAAAAAGAGTTGTGGAATCATAATTTTC
AAAAATTGACAAAACATGATCACCCTTCTTCTGAAGACATGCAACAAAATCATTAAAAAAAGACAGTTAGATTGGTAGAA
AAAATTACCACATCACTAAAAGAAGAATCAATGGAGTGAGCAGCGACATGAGCTCTATGTTCATAGCCTTTTTGAAGTCC
TTTCTTTTTTTCAAACTTAGGTTTCAACTCCAGATGAAGGGTCTAGCATCGCCCAATTAAATGACCAAGATTATGACAGT
GCCGACACTTCAAATCTTGTCATTTCCCTCGATAAGTCTTATCTTTCCTTATTTATCTATTAACGACATAAGCATGGGTC
TCTAACATAGTGGTTTTTTGCTCTAGATTCATGACTTTCTTGCGAGTTTCTTCTCTTTGAATTGTAGCACATACACTTGC
AAAAGATGGAAGATCAGGATTCATAAGAAATCGACTGCGGAGATCTTTATAATCTGGATCAAGGCTAGATAAAAGCTGGA
ATATCTTGTCTTCTTCCTCTTATTTCTTTAATACTACAACATCAACACTATGAGGGTGATATAATGCGAGTTCACTCCAC
ATACCTTTTAGTATTCCAAGCAATTGCACACAAGTCTTGTTATTTTGATGAAGGTTAGTAAGATCTTTTTTATTTAAGAA
ACATGAGTCATATTGTTCTAATTTCCATACATTTCTTTCATAGCCTCTAGAGATCAAAAAAAGATTCTGAATGGCTAAAT
ATTTGCATTATCAAGCTTTATAGGTTTGTGAGGAAGGATCAAAAGGTTTAATATGGCAATTAACATAGCCAAGTTTGGAC
CTTCCACCAAGGGCAATTATCACAACCCTTTACCAAAGAAGATAGTTAAGTTCATTCAACAATATAGAGCCCAGACGCTA
ATTAGAATTTGGTTCTCCTTCTAAAATGTTAGAAGGTTTGTTTCCAGCATCAACACTATCAGATTTAGAAGTTTCTGTCA
TAATAATCTTAAACAAAAAATAAAACAATAAGAACCTACTCTAATACCATGAAGATTCTTAATCTGTTACTATCCACAAA
AAATAAAACAATAAGAACCTACTCTAATACCATGAAGATTCTTAATCTGTTACTATCATAATTAATTACATGTACATAAT
ACAAGTTTTAAATAGAAAGGATACTAAAAATCTTACTCTACAATCTTGGCATATCAATTCATATTCTTATCATATCTACA
ATAATGTGAATCCACAACAATTAATTTACATAACAAATAGCAATAATATCGGCAAAAATTTAGCTTTCCTTCAATACAAT
TATTATAGTGAACTAGAATATTAATGCACATCACTACTAACATATAAGGTTTTCTTTTCTTTTTATTATAGATGGAGATT
GACCTAGAAGTTTTACTTTCTTAATCTCTCTTAAATCTCACTAATTAAGTGCAGGCATATCATGCATAAATAGTTATTGT
TGCTAGATAAATTATTACACCTGATTTTAGATCTGATCACTAGACTGTGTTTAATAACTTTAGTATAAAGTTTTTTAAAT
GATTTTTTGAAAATCCAAACTTAATTATCTAATTCAAACTTCTAGATGATTCAATACTTTTTAAGTGGGATAAACAAGGT
GAGTGAGACATGATGTTTATTTTCACTTTTTTTTTTTTTTTATGTAGACAAGAGACGGTGATGCATTTATCTCTCTAAAT
TTATCAATACATAAAAAGTTGAATCATTTAAAATTGCTAAGCATGTGAGCACTTCACATTGGACTCCTAATGAGTATGGG
ATCTAAAGCTAATGAATTGATAATATCTATTGTTAAATTTGTTTAACTATTGTGGCTTTCTTGCCTTGGAGACCAAATAA
AGTATAAACTTAAGATTAGAACATTTGAATAAACAATAGTGACATGCCATTTTGAAATGCACTTCGAACTATTGTTCAGG
TGCCACCAACAAAATAATGGGATTAATCTTTTTAGTTGTCTTGAATTAAGAATTGCAAGCCATAGCTAGGGCATAGAAGT
AAATCTATTTTGCGTTAGTGATGCTGTGGTCCAATGCTATTCATGATTGTTGTGACAAGCTGTGCTTCGAGGTAAATTGC
TTTGCAAACTCACTAGGTCCCACATCCAACTAAGCCTTTTCATTTCTTGCCTCACAACCACCTTGGAACACACATTCATT
TACCTCCTGTTATAAATTAGTGGACACCGCGTACTGAAAATTGCAGATAGGTGTCCCAAATTCACCATTTTAAGAAAACT
CCACTCCACCTCTCCCACCCCCTTTCTTTCTCACTCATTTTCTTATGTGAGAGAGGAGCTAGCTAGGCTGAGTTTCTAGC
TAGAGCTATATCAGCGATATCAAGTGAAGAGAAGGTGTGT