Parental gene: | APEX1, ENSBTAG00000002745 |
| Aliases: | APEX1, APEN, BAP1, REF-1 |
| Description: | DNA-(apurinic or apyrimidinic site) lyase DNA-(apurinic or apyrimidinic site) lyase, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:P23196] |
| Organism: | Cow (Bos taurus) |
| Coordinates: | 10:26706594..26709174(-) |
>ENSBTAG00000002745
ATGCCGAAACGTGGGAAAAAGGGAGCGGTGGTCGAAGACGCGGAAGAGCCCAAGACTGAGCCAGAGGCGAAGAAGAGTAA
GGCAGGAGCGAAAAAGAACGAAAAAGAGGCAGTAGGAGAGGGCGCAGTTCTGTATGAAGACCCCCCAGATCAGAAAACCT
CACCCAGTGGCAAATCAGCCACACTCAAGATCTGCTCGTGGAATGTGGATGGGCTTCGAGCCTGGATTAAGAAGAAAGGT
TTAGATTGGGTAAAGGAAGAAGCCCCAGACATCCTGTGCCTCCAAGAGACCAAATGTTCAGAGAACAAACTACCAGTTGA
ACTTCAAGAATTGTCTGGATTGTCCCATCAGTACTGGTCAGCTCCTTCAGACAAGGAAGGGTACAGTGGTGTGGGCCTCC
TCTCCCGCCAGTGCCCACTCAAAGTCTCTTATGGCATTGGTGAGGAAGAACATGATCAGGAAGGCCGAGTGATTGTGGCT
GAATATGACGCATTTGTGCTGGTGACAGCCTATGTGCCTAATGCAGGCCGAGGTCTGGTGCGCCTGGAGTATCGCCAGCG
CTGGGATGAAGCTTTTCGCAAATTCCTGAAGGGTTTGGCATCCCGCAAGCCCCTTGTGCTATGTGGGGACCTCAATGTGG
CTCATGAAGAAATTGACCTTCGCAACCCGAAGGGAAATAAAAAGAATGCTGGCTTCACTCCACAAGAGCGGCAGGGCTTC
GGGGAATTGCTGCAGGCTGTGCCACTCACTGACAGTTTCCGGCATCTCTACCCCAACACCGCCTATGCCTACACCTTCTG
GACCTATATGATGAATGCGCGATCCAAAAACGTTGGTTGGCGCCTTGATTATTTTTTGTTATCTCAGTCTCTGTTGCCTG
CATTGTGTGACAGTAAAATCCGTTCCAAGGCTCTGGGCAGTGACCACTGTCCCATTACCCTATACCTAGCTCTGTGA
ATGCCGAAACGTGGGAAAAAGGGAGCGGTGGTCGAAGACGCGGAAGAGCCCAAGACTGAGCCAGAGGCGAAGAAGAGTAA
GGCAGGAGCGAAAAAGAACGAAAAAGAGGCAGTAGGAGAGGGCGCAGTTCTGTATGAAGACCCCCCAGATCAGAAAACCT
CACCCAGTGGCAAATCAGCCACACTCAAGATCTGCTCGTGGAATGTGGATGGGCTTCGAGCCTGGATTAAGAAGAAAGGT
TTAGATTGGGTAAAGGAAGAAGCCCCAGACATCCTGTGCCTCCAAGAGACCAAATGTTCAGAGAACAAACTACCAGTTGA
ACTTCAAGAATTGTCTGGATTGTCCCATCAGTACTGGTCAGCTCCTTCAGACAAGGAAGGGTACAGTGGTGTGGGCCTCC
TCTCCCGCCAGTGCCCACTCAAAGTCTCTTATGGCATTGGTGAGGAAGAACATGATCAGGAAGGCCGAGTGATTGTGGCT
GAATATGACGCATTTGTGCTGGTGACAGCCTATGTGCCTAATGCAGGCCGAGGTCTGGTGCGCCTGGAGTATCGCCAGCG
CTGGGATGAAGCTTTTCGCAAATTCCTGAAGGGTTTGGCATCCCGCAAGCCCCTTGTGCTATGTGGGGACCTCAATGTGG
CTCATGAAGAAATTGACCTTCGCAACCCGAAGGGAAATAAAAAGAATGCTGGCTTCACTCCACAAGAGCGGCAGGGCTTC
GGGGAATTGCTGCAGGCTGTGCCACTCACTGACAGTTTCCGGCATCTCTACCCCAACACCGCCTATGCCTACACCTTCTG
GACCTATATGATGAATGCGCGATCCAAAAACGTTGGTTGGCGCCTTGATTATTTTTTGTTATCTCAGTCTCTGTTGCCTG
CATTGTGTGACAGTAAAATCCGTTCCAAGGCTCTGGGCAGTGACCACTGTCCCATTACCCTATACCTAGCTCTGTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP017611_brain | 34 .49 RPM |
| SRP017611_kidney | 41 .25 RPM |
| SRP017611_liver | 29 .90 RPM |
| ERP005899_muscle | 61 .08 RPM |
| ERP005899_liver | 34 .61 RPM |
| SRP030211_testis | 38 .44 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Echinops telfairi | ENSETEG00000004855 | ortholog_one2many | 1 retrogene | |
| Loxodonta africana | ENSLAFG00000021872 | ortholog_one2one | 1 retrogene | |
| Mus musculus | ENSMUSG00000035960 | ortholog_one2one | 2 retrogenes | |
| Otolemur garnettii | ENSOGAG00000013335 | ortholog_one2many | 3 retrogenes | |
| Rattus norvegicus | ENSRNOG00000009663 | ortholog_one2one | 1 retrogene | |
| Ictidomys tridecemlineatus | ENSSTOG00000010096 | ortholog_one2one | 1 retrogene | |
| Tupaia belangeri | ENSTBEG00000006405 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_btau_1729 | 87.89 | 90.25 | Please wait, loading  | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSBTAG00000002745 retrocopies