Parental gene:

HSD17B10, ENSCAFG00000016277

Aliases:None
Description:hydroxysteroid (17-beta) dehydrogenase 10 [Source:HGNC Symbol;Acc:4800]
Organism:Dog (Canis familiaris)
Coordinates:X:45165408..45167815(-)


>ENSCAFG00000016277
ATGGCTGCGGCCTGTCGGGGCGTGAAGGGCCTGGTTGCTCTAGTAACCGGAGGAGCCTCTGGTTTAGGTCTGGCCACGGC
AGAGCGACTGGTGGGGCAAGGGGCCACTGCTGTGCTTCTGGACCTGCCCAACTCTGATGGCGAGGTACAAGCCAAGAAGT
TGGGGAAGAACTGCACCTTTGCCGCAGCTGATGTGACCTCAGAGAAGGACGTGCAAGCAGCCCTGACTCTAGCAAAAGAA
AAGTTCGGCCGTGTGGATGTGGCAGTCAACTGTGCAGGTATTGCAGTGGCCATCAAGACATACAACTTAAAGAAGAATCA
GGCCCATACCTTGGAGGACTTCCAGCGAGTTCTCAATGTGAATCTCTTAGGCACCTTCAATGTGATCCGCCTGGTAGCTG
GTGAGATGGGCCAGAATGAACCAGACCAGGGAGGCCAACGTGGGGTCATCATCAACACTGCCAGCGTGGCTGCCTTTGAG
GGCCAGGTTGGACAAGCTGCATACTCTGCTTCCAAAGGGGGCATAGTGGGCATGACCCTGCCCATTGCTCGGGATCTGGC
TCCTGTGGGCATCCGAGTGATGACCATTGCTCCAGGCCTATTTGGCACCCCGCTGCTGACCAGCCTCCCAGAAAAAGTGC
GCAACTTCTTGGCCAGCCAAGTGCCCTTCCCCAACCGACTGGGTGATCCCGCTGAGTATGCTCATCTGGTACAAGCCATC
ATCGAGAATCCATTCATCAACGGAGAGGTCATCCGGCTGGATGGGGCCATCCGCATGCAGCCTTGA

Library Parental gene expression (RPM)
SRP017611_brain 23 .90 RPM
SRP017611_kidney 159 .28 RPM
SRP017611_liver 39 .52 RPM
SRP012049_cerebellum 41 .07 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000005036 ortholog_one2one 1 retrogene
retro_amel_371,
Canis familiaris ENSCAFG00000005927 other_paralog 1 retrogene
retro_cfam_2172,
Canis familiaris ENSCAFG00000007520 within_species_paralog 1 retrogene
retro_cfam_1341,
Canis familiaris ENSCAFG00000014368 other_paralog 4 retrogenes
retro_cfam_1199, retro_cfam_1212, retro_cfam_1273, retro_cfam_568,
Choloepus hoffmanni ENSCHOG00000000939 ortholog_one2many 1 retrogene
retro_chof_582,
Cavia porcellus ENSCPOG00000009594 ortholog_one2one 1 retrogene
retro_cpor_535,
Dipodomys ordii ENSDORG00000004051 ortholog_one2one 1 retrogene
retro_dord_532,
Erinaceus europaeus ENSEEUG00000005080 ortholog_one2one 1 retrogene
retro_eeur_379,
Felis catus ENSFCAG00000013899 ortholog_one2one 1 retrogene
retro_fcat_1827,
Macropus eugenii ENSMEUG00000008565 ortholog_one2one 1 retrogene
retro_meug_2184,
Myotis lucifugus ENSMLUG00000000175 ortholog_one2many 1 retrogene
retro_mluc_4,
Otolemur garnettii ENSOGAG00000002951 ortholog_one2one 1 retrogene
retro_ogar_1823,
Tarsius syrichta ENSTSYG00000005340 ortholog_one2one 3 retrogenes
retro_tsyr_1000, retro_tsyr_1542, retro_tsyr_2078,
Xenopus tropicalis ENSXETG00000007721 ortholog_one2one 1 retrogene
retro_xtro_39,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cfam_545 70.95 55.94
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Download FASTA sequences of all ENSCAFG00000016277 retrocopies