Parental gene:

RPS3A, ENSCHOG00000007238

Aliases:None
Description:ribosomal protein S3A [Source:HGNC Symbol;Acc:10421]
Organism:Sloth (Choloepus hoffmanni)
Coordinates:GeneScaffold_4360:20714..24109(+)


>ENSCHOG00000007238
GTTGATCCATTTTCTAAGAAAGATTGGTATGATGTGAAAGCACCAGCAATGTTTAATATAAGAAATATTGGGAAAACACT
AGTTACAAGGACTCAAGGAACCAAAATTGCATCTGATGGCCTTAAGGGTCGTGTTTTTGAAGTGAGCCTTGCTGATCTGC
AGAATGATGAAGTTGCATTTAGAAAATTCAAGCTAATTACTGAGGATGTGCAGGGCAAAAACTGCCTAACCAACTTCCAT
GGCATGGATCTTACCCGTGACAAAATGTGTTCCATGGTTAAAAAATGGCAGACCATGATTGAAGCTCATGTCGATGTCAA
AACTACCGATGGTTATTTGCTTCGTCTTTTCTGTGTTGGTTTTACCAAAAAACGCAACAATCAGATTCGGAAGACCTCTT
ACGCTCAGCACCAACAGGTCCGCCAAATCCGGAAAAAGATGATGGAAATCATGACCCGAGAGGTGCAGACAAATGACTTG
AAAGAAGTGGTCAATAAATTGATTCCAGACAGCATTGGTAAAGACATAGAAAAGGCTTGCCAATCTATCTATCCTCTCCA
TGATGTGTTTGTTAGAAAAGTAAAAATGCTGAAGAAGCCCAAGTTTGAATTGGGAAAACTCATGGAGCTTCACGGTGAAG
GTAGTAGTTCTGGAAAAGCAACTGGAGATGAGACAGGTGCTAAAGTGGAACGAGCTGATGGTTATGAGCCACCAGTCCAA
GAATCTGTTTAA

Species Parental gene accession Homology type Retrogenes number
Macaca mulatta ENSMMUG00000021821 possible_ortholog 1 retrogene
Monodelphis domestica ENSMODG00000000969 ortholog_one2one 6 retrogenes
Mus musculus ENSMUSG00000028081 possible_ortholog 2 retrogenes
Rattus norvegicus ENSRNOG00000011893 possible_ortholog 1 retrogene
Sarcophilus harrisii ENSSHAG00000015088 ortholog_one2many 2 retrogenes
Tursiops truncatus ENSTTRG00000013094 ortholog_one2one 10 retrogenes

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_chof_126 92.95 63.79
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2. retro_chof_220 76.87 53.91
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3. retro_chof_342 99.59 100.00
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4. retro_chof_370 86.67 74.07
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5. retro_chof_685 90.45 64.61
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6. retro_chof_824 97.59 68.31
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7. retro_chof_826 97.90 97.94
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8. retro_chof_912 75.61 50.21
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9. retro_chof_1076 87.08 85.60
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10. retro_chof_1092 88.17 68.72
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11. retro_chof_1207 76.58 64.20
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12. retro_chof_1309 83.06 50.21
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13. retro_chof_1311 87.58 62.96
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14. retro_chof_1341 97.81 56.38
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15. retro_chof_1362 92.31 90.95
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16. retro_chof_1377 70.20 100.00
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17. retro_chof_1393 93.85 100.00
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18. retro_chof_1395 78.81 61.32
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19. retro_chof_1441 90.31 92.59
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20. retro_chof_1488 97.94 100.00
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21. retro_chof_1490 95.06 100.00
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22. retro_chof_1598 85.07 55.14
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23. retro_chof_1626 95.24 51.85
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24. retro_chof_2056 99.59 100.00
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25. retro_chof_2179 72.41 58.85
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26. retro_chof_2201 89.31 52.67
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27. retro_chof_2282 98.35 100.00
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28. retro_chof_2417 90.95 100.00
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29. retro_chof_2465 89.75 100.00
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30. retro_chof_2500 97.02 68.31
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31. retro_chof_2613 88.02 68.72
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32. retro_chof_2628 91.30 56.79
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33. retro_chof_2635 85.71 57.61
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34. retro_chof_2668 65.93 55.56
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Download FASTA sequences of all ENSCHOG00000007238 retrocopies