Parental gene:

ENSCPOG00000003750

Aliases:None
Description:40S ribosomal protein S6 [Source:UniProtKB/TrEMBL;Acc:H0V1L6]
Organism:Guinea Pig (Cavia porcellus)
Coordinates:scaffold_21:1727961..1731138(+)


>ENSCPOG00000003750
ATGAAGCTGAACATCTCCTTCCCCGCCACTGGCTGCCAGAAACTCATTGAGGTGGATGATGAACGTAAACTTCGTACGTT
CTATGAGAAGCGTATGGCCACAGAAGTTGCTGCTGACTCTCTAGGAGAAGAGTGGAAGGGTTATGTGGTCCGGATCAGTG
GTGGGAACGACAAGCAAGGTTTCCCTATGAAGCAAGGCGTCTTGACTCATGGCCGAGTTCGCTTGCTACTGAGCAAGGGG
CATTCCTGTTATAGACCAAGGAGAACCGGAGAGAGAAAGCGTAAATCTGTCCGAGGTTGCATTGTGGATGCCAATCTGAG
CGTTCTCAACTTGGTTATTGTAAAAAAAGGAGAGAAAGATATTCCTGGATTGACTGATACTACTGTGCCTCGGCGCCTGG
GGCCCAAAAGAGCAAGCAGAATCCGCAAACTTTTCAATCTCTCTAAAGAAGATGATGTTCGCCAATATGTTGTCAGGAAG
CCCTTAAACAAAGAAGGTAAGAAACCCAGGACTAAAGCCCCTAAGATTCAGCGTCTTGTTACTCCGCGTGTCCTCCAACA
CAAGCGCCGCCGTATTGCTCTGAAGAAGCAGCGTACTAAGAAAAACAAAGAGGAGGCTGCAGAATATGCTAAGCTTCTTG
CCAAGAGAATGAAGGAAGCTAAAGAAAAACGCCAGGAACAAATTGCCAAGAGACGTAGGCTTTCCTCTCTGAGAGCTTCT
ACTTCTAAGTCTGAGTCCAGTCAGAAATAA

Library Parental gene expression (RPM)
SRP017611_liver 140 .33 RPM
SRP017611_kidney 271 .56 RPM
SRP017611_brain 155 .47 RPM
SRP040447_lung 255 .36 RPM
SRP040447_skeletal_muscle 296 .45 RPM



Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000017634 possible_ortholog 1 retrogene
Ailuropoda melanoleuca ENSAMEG00000002925 possible_ortholog 14 retrogenes
Canis familiaris ENSCAFG00000001615 possible_ortholog 4 retrogenes
Choloepus hoffmanni ENSCHOG00000004622 possible_ortholog 15 retrogenes
Callithrix jacchus ENSCJAG00000020612 possible_ortholog 6 retrogenes
Dasypus novemcinctus ENSDNOG00000007241 possible_ortholog 1 retrogene
Dipodomys ordii ENSDORG00000012057 possible_ortholog 2 retrogenes
Equus caballus ENSECAG00000016190 possible_ortholog 5 retrogenes
Echinops telfairi ENSETEG00000001584 possible_ortholog 18 retrogenes
Ficedula albicollis ENSFALG00000003078 ortholog_one2many 1 retrogene
Felis catus ENSFCAG00000002541 possible_ortholog 26 retrogenes
Homo sapiens ENSG00000137154 possible_ortholog 16 retrogenes
Gorilla gorilla ENSGGOG00000002652 possible_ortholog 13 retrogenes
Loxodonta africana ENSLAFG00000010766 ortholog_many2many 4 retrogenes
Microcebus murinus ENSMICG00000007262 possible_ortholog 24 retrogenes
Myotis lucifugus ENSMLUG00000007588 possible_ortholog 27 retrogenes
Macaca mulatta ENSMMUG00000003412 possible_ortholog 1 retrogene
Monodelphis domestica ENSMODG00000004095 possible_ortholog 1 retrogene
Mus musculus ENSMUSG00000028495 possible_ortholog 45 retrogenes
Nomascus leucogenys ENSNLEG00000017532 possible_ortholog 14 retrogenes
Otolemur garnettii ENSOGAG00000016254 possible_ortholog 21 retrogenes
Ochotona princeps ENSOPRG00000000751 possible_ortholog 6 retrogenes
Ochotona princeps ENSOPRG00000012290 ortholog_one2many 5 retrogenes
Pongo abelii ENSPPYG00000019193 possible_ortholog 15 retrogenes
Pan troglodytes ENSPTRG00000039153 possible_ortholog 19 retrogenes
Rattus norvegicus ENSRNOG00000007663 possible_ortholog 21 retrogenes
Rattus norvegicus ENSRNOG00000049025 possible_ortholog 8 retrogenes
Sorex araneus ENSSARG00000006549 possible_ortholog 6 retrogenes
Sarcophilus harrisii ENSSHAG00000005486 possible_ortholog 1 retrogene
Sus scrofa ENSSSCG00000005169 possible_ortholog 6 retrogenes
Tupaia belangeri ENSTBEG00000003474 possible_ortholog 33 retrogenes
Tarsius syrichta ENSTSYG00000008569 possible_ortholog 8 retrogenes
Tursiops truncatus ENSTTRG00000001787 possible_ortholog 11 retrogenes
Vicugna pacos ENSVPAG00000006030 possible_ortholog 10 retrogenes

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cpor_22 96.79 100.00
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2. retro_cpor_317 54.17 57.43
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3. retro_cpor_486 58.43 69.88
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4. retro_cpor_1244 73.88 51.81
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Download FASTA sequences of all ENSCPOG00000003750 retrocopies