Parental gene:

RPS23, ENSCPOG00000022705

Aliases:None
Description:None
Organism:Guinea Pig (Cavia porcellus)
Coordinates:scaffold_1:21653415..21654943(+)


>ENSCPOG00000022705
TTAGGCAAGTGCCGCGGGCTGCGTACTGCCCGGAAGCTCCGCAGTCACCGGCGGGACCAGAAGTGGCACGATAAGCAGTA
CAAGAAGGCCCACCTGGGCACAGCCCTGAAAGCTAACCCTTTCGGAGGGGCCTCCCACGCCAAGGGAATCGTGCTGGAAA
AAGTGGGTGTTGAGGCCAAGCAGCCTAATTCCGCCATCAGGAAGTGCGTCAGGGTCCAGCTGATCAAGAACGGGAAGAAG
ATCACAGCCTTCGTCCCCAATGATGGTTGCTTGAACTTCATCGAGGAAAATGATGAAGTTCTAGTCGCTGGATTTGGTCG
AAAAGGTCATGCCGTTGGTGACATTCCTGGAGTCCGCTTTAAGGTTGTTAAAGTAGCCAATGTCTCTCTTCTGGCTCTCT
ACAAAGGCAAGAAGGAGAGACCAAGATCATAA

Library Parental gene expression (RPM)
SRP017611_liver 70 .91 RPM
SRP017611_kidney 101 .23 RPM
SRP017611_brain 49 .23 RPM
SRP040447_lung 175 .21 RPM
SRP040447_skeletal_muscle 135 .13 RPM



Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000011136 ortholog_one2one 1 retrogene
retro_acar_85,
Ailuropoda melanoleuca ENSAMEG00000015966 ortholog_one2one 3 retrogenes
retro_amel_1096, retro_amel_341, retro_amel_751,
Bos taurus ENSBTAG00000013358 possible_ortholog 3 retrogenes
retro_btau_173, retro_btau_205, retro_btau_80,
Callithrix jacchus ENSCJAG00000011247 possible_ortholog 2 retrogenes
retro_cjac_126, retro_cjac_256,
Dipodomys ordii ENSDORG00000001813 possible_ortholog 2 retrogenes
retro_dord_187, retro_dord_93,
Equus caballus ENSECAG00000020523 ortholog_one2one 2 retrogenes
retro_ecab_275, retro_ecab_500,
Erinaceus europaeus ENSEEUG00000001849 ortholog_one2one 7 retrogenes
retro_eeur_102, retro_eeur_262, retro_eeur_326, retro_eeur_462, retro_eeur_515, retro_eeur_53, retro_eeur_662,
Felis catus ENSFCAG00000008839 ortholog_one2one 7 retrogenes
retro_fcat_1557, retro_fcat_1601, retro_fcat_1876, retro_fcat_2000, retro_fcat_5, retro_fcat_609, retro_fcat_644,
Loxodonta africana ENSLAFG00000031506 ortholog_one2one 3 retrogenes
retro_lafr_1117, retro_lafr_1216, retro_lafr_606,
Macropus eugenii ENSMEUG00000012931 possible_ortholog 1 retrogene
retro_meug_811,
Microcebus murinus ENSMICG00000013964 ortholog_one2one 2 retrogenes
retro_mmur_1354, retro_mmur_872,
Myotis lucifugus ENSMLUG00000013939 ortholog_one2one 2 retrogenes
retro_mluc_1676, retro_mluc_2183,
Macaca mulatta ENSMMUG00000003578 possible_ortholog 4 retrogenes
retro_mmul_1239, retro_mmul_1974, retro_mmul_2305, retro_mmul_852,
Oryctolagus cuniculus ENSOCUG00000010363 ortholog_one2one 2 retrogenes
retro_ocun_195, retro_ocun_95,
Otolemur garnettii ENSOGAG00000008163 ortholog_one2one 11 retrogenes
retro_ogar_1177, retro_ogar_1303, retro_ogar_1785, retro_ogar_1849, retro_ogar_238, retro_ogar_2479, retro_ogar_253, retro_ogar_2695, retro_ogar_2823, retro_ogar_3519, retro_ogar_364,
Pan troglodytes ENSPTRG00000017052 ortholog_one2one 6 retrogenes
retro_ptro_1190, retro_ptro_2056, retro_ptro_2223, retro_ptro_2707, retro_ptro_3075, retro_ptro_3122,
Pteropus vampyrus ENSPVAG00000002083 possible_ortholog 4 retrogenes
retro_pvam_1483, retro_pvam_782, retro_pvam_80, retro_pvam_922,
Rattus norvegicus ENSRNOG00000016580 ortholog_one2one 12 retrogenes
retro_rnor_100, retro_rnor_1394, retro_rnor_149, retro_rnor_1691, retro_rnor_1941, retro_rnor_1959, retro_rnor_1982, retro_rnor_2119, retro_rnor_2182, retro_rnor_2492, retro_rnor_525, retro_rnor_559,
Sorex araneus ENSSARG00000008904 ortholog_one2one 8 retrogenes
retro_sara_194, retro_sara_346, retro_sara_422, retro_sara_481, retro_sara_540, retro_sara_647, retro_sara_648, retro_sara_714,
Sarcophilus harrisii ENSSHAG00000008347 possible_ortholog 2 retrogenes
retro_shar_257, retro_shar_348,
Ictidomys tridecemlineatus ENSSTOG00000000824 ortholog_one2one 3 retrogenes
retro_itri_1418, retro_itri_204, retro_itri_377,
Tarsius syrichta ENSTSYG00000011385 ortholog_one2one 5 retrogenes
retro_tsyr_1656, retro_tsyr_1946, retro_tsyr_406, retro_tsyr_462, retro_tsyr_933,
Tursiops truncatus ENSTTRG00000014491 ortholog_one2one 6 retrogenes
retro_ttru_1253, retro_ttru_1555, retro_ttru_186, retro_ttru_458, retro_ttru_487, retro_ttru_578,
Vicugna pacos ENSVPAG00000009427 possible_ortholog 7 retrogenes
retro_vpac_195, retro_vpac_239, retro_vpac_393, retro_vpac_543, retro_vpac_56, retro_vpac_598, retro_vpac_81,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cpor_1182 58.70 63.64
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2. retro_cpor_1377 69.74 51.75
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Download FASTA sequences of all ENSCPOG00000022705 retrocopies