Parental gene: | C1GALT1, ENSDNOG00000017353 |
| Aliases: | None |
| Description: | core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase, 1 [Source:HGNC Symbol;Acc:24337] |
| Organism: | Armadillo (Dasypus novemcinctus) |
| Coordinates: | GeneScaffold_1531:23912..42556(+) |
>ENSDNOG00000017353
ATGGCCTCTAAATCTTGGCTGAATGTTTTAATATTCCTTTGTGGATCAGCAGTAGGGTTTTTTTTATGTTCTCAGCTTTT
TAGTACTTTGTTGGAAGAACAAAGTGATACCCAGCCTAATATTCTTCATAATGATCCTCATGCTAGACATTCTGATGATA
ATGGACAGCATCATCTAGAAGGACAGATGAACTTCAATGCAGATGTCAACCAACATAAAGATGAGGACACAGACATCGCT
GAGAAACTCTATCAGAAGGTTAAAATTCTTTGCTGGGTTATGACAGGACCTCAAAATCTAGAGAAAAAGGCCAAACACGT
CAAAGCCACATGGGCCCAACGTTGTAATAAAGTTTTGTTTATGAGTTCAGAAGAAAATAAAGACTTCCCTACTGTGGGAT
TAAAAACCAAAGAAGGCAGAGACCAACTATACTGGAAAACAATTAAAGCTTTTCAGTATGTTTATGACCATTATTTAGAA
GATGCTGATTGGTTTATGAAAGCAGATGATGATACATATGTCATACTAGACAATTTGAGATGGCTTCTTTCAAAATATGA
TCCTCAAAACCCCATTTACTTTGGGAGAAGATTTAAGCCCTTTGTAAAGCAGGGCTACATGAGTGGAGGAGCTGGATATG
TATTGAGCAAGGAAGCCTTGAAGAGATTTGTGGATGCATTTAAAACGGAGAAATGCACACACAGTTCCTCCATTGAAGAC
TTAGCACTGGGGAGATGCATGGAAATTATGAATGTAGAGGCGGGAGATTCCAGAGATACCACTGGAAAGGAAACTTTTCA
TCCCTTTGTACCTGAACACCACTTAATCAAAGGTTATCTACCCAAAACCTTTTGGTACTGGAATTACAACTATTATCCTA
CTGTAGAGGGTCCTGGGTGCTGTTCTGATCTTGCAATTTCTTTTCATTACGTTGACCCTCTAACTATGTATGAATTAGAA
TACCTCGTTTATCATCTTCGCCCATATTATCTATACAGATATCCTGCCTTACCTGAGAATGTAAAGGAAATCGGTGAAAA
TACAAATGATGATCCAAAAGTAAAAAAAAAAAACCTTTGA
ATGGCCTCTAAATCTTGGCTGAATGTTTTAATATTCCTTTGTGGATCAGCAGTAGGGTTTTTTTTATGTTCTCAGCTTTT
TAGTACTTTGTTGGAAGAACAAAGTGATACCCAGCCTAATATTCTTCATAATGATCCTCATGCTAGACATTCTGATGATA
ATGGACAGCATCATCTAGAAGGACAGATGAACTTCAATGCAGATGTCAACCAACATAAAGATGAGGACACAGACATCGCT
GAGAAACTCTATCAGAAGGTTAAAATTCTTTGCTGGGTTATGACAGGACCTCAAAATCTAGAGAAAAAGGCCAAACACGT
CAAAGCCACATGGGCCCAACGTTGTAATAAAGTTTTGTTTATGAGTTCAGAAGAAAATAAAGACTTCCCTACTGTGGGAT
TAAAAACCAAAGAAGGCAGAGACCAACTATACTGGAAAACAATTAAAGCTTTTCAGTATGTTTATGACCATTATTTAGAA
GATGCTGATTGGTTTATGAAAGCAGATGATGATACATATGTCATACTAGACAATTTGAGATGGCTTCTTTCAAAATATGA
TCCTCAAAACCCCATTTACTTTGGGAGAAGATTTAAGCCCTTTGTAAAGCAGGGCTACATGAGTGGAGGAGCTGGATATG
TATTGAGCAAGGAAGCCTTGAAGAGATTTGTGGATGCATTTAAAACGGAGAAATGCACACACAGTTCCTCCATTGAAGAC
TTAGCACTGGGGAGATGCATGGAAATTATGAATGTAGAGGCGGGAGATTCCAGAGATACCACTGGAAAGGAAACTTTTCA
TCCCTTTGTACCTGAACACCACTTAATCAAAGGTTATCTACCCAAAACCTTTTGGTACTGGAATTACAACTATTATCCTA
CTGTAGAGGGTCCTGGGTGCTGTTCTGATCTTGCAATTTCTTTTCATTACGTTGACCCTCTAACTATGTATGAATTAGAA
TACCTCGTTTATCATCTTCGCCCATATTATCTATACAGATATCCTGCCTTACCTGAGAATGTAAAGGAAATCGGTGAAAA
TACAAATGATGATCCAAAAGTAAAAAAAAAAAACCTTTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP012922_ascending_colon | 109 .10 RPM |
| SRP012922_cerebellum | 1 .37 RPM |
| SRP012922_heart | 2 .09 RPM |
| SRP012922_kidney | 18 .07 RPM |
| SRP012922_liver | 5 .73 RPM |
| SRP012922_lung | 3 .51 RPM |
| SRP012922_quadricep_muscle | 1 .38 RPM |
| SRP012922_spleen | 9 .27 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Choloepus hoffmanni | ENSCHOG00000000225 | ortholog_one2one | 2 retrogenes | |
| Homo sapiens | ENSG00000106392 | ortholog_one2one | 2 retrogenes | |
| Loxodonta africana | ENSLAFG00000000063 | ortholog_one2one | 1 retrogene | |
| Myotis lucifugus | ENSMLUG00000014789 | ortholog_one2one | 1 retrogene | |
| Macaca mulatta | ENSMMUG00000016338 | ortholog_one2one | 1 retrogene | |
| Oryctolagus cuniculus | ENSOCUG00000026002 | ortholog_one2many | 1 retrogene | |
| Otolemur garnettii | ENSOGAG00000012847 | ortholog_one2one | 1 retrogene | |
| Petromyzon marinus | ENSPMAG00000001562 | ortholog_one2many | 1 retrogene | |
| Pan troglodytes | ENSPTRG00000018925 | ortholog_one2one | 2 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_dnov_1801 | 74.46 | 99.72 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_dnov_1905 | 86.01 | 94.99 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSDNOG00000017353 retrocopies