Parental gene: | PSMA5, ENSECAG00000011835 |
| Aliases: | None |
| Description: | proteasome (prosome, macropain) subunit, alpha type, 5 [Source:HGNC Symbol;Acc:9534] |
| Organism: | Horse (Equus caballus) |
| Coordinates: | 5:58682291..58705316(+) |
>ENSECAG00000011835
ATGTTCCTCACCCGGTCTGAGTACGACAGGGGTGTGAATACTTTTTCTCCTGAAGGAAGATTATTTCAAGTGGAATATGC
CATTGAGGCTATCAAGCTTGGTTCTACAGCCATTGGGATCCAGACATCAGAGGGTGTGTGCCTAGCTGTGGAGAAGAGAA
TTACCTCCCCACTCATGGAGCCCAGCAGCATTGAGAAAATTGTAGAGATTGATGCTCACATAGGTTGTGCCATGAGTGGG
CTAATTGCTGATGCTAAGACTTTAATTGATAAAGCCAGAGTGGAGACACAGAACCATTGGTTCACCTATAATGAGACAAT
GACAGTGGAGAGTGTAACCCAGGCTGTGTCCAATCTGGCTCTGCAGTTTGGAGAAGAAGATGCAGATCCAGGTGCCATGT
CTCGTCCTTTTGGAGTAGCACTGTTATTTGGAGGCGTTGATGAGAAAGGACCCCAGCTGTTTCATATGGACCCATCTGGA
ACCTTTGTACAGTGTGATGCTCGAGCAATTGGCTCTGCTTCAGAGGGTGCCCAGAGCTCCTTGCAAGAAGTTTACCACAA
GTCTATGACACTGAAAGAAGCCATCAAGTCTTCACTCATCATCCTCAAACAAGTAATGGAGGAGAAGCTGAATGCAACTA
ACATAGAGCTAGCCACAGTGCAGCCTGGCCAGAATTTCCACATGTTCACAAAGGAAGAACTTGAAGAGGTTATCAAGGAC
ATTTAA
ATGTTCCTCACCCGGTCTGAGTACGACAGGGGTGTGAATACTTTTTCTCCTGAAGGAAGATTATTTCAAGTGGAATATGC
CATTGAGGCTATCAAGCTTGGTTCTACAGCCATTGGGATCCAGACATCAGAGGGTGTGTGCCTAGCTGTGGAGAAGAGAA
TTACCTCCCCACTCATGGAGCCCAGCAGCATTGAGAAAATTGTAGAGATTGATGCTCACATAGGTTGTGCCATGAGTGGG
CTAATTGCTGATGCTAAGACTTTAATTGATAAAGCCAGAGTGGAGACACAGAACCATTGGTTCACCTATAATGAGACAAT
GACAGTGGAGAGTGTAACCCAGGCTGTGTCCAATCTGGCTCTGCAGTTTGGAGAAGAAGATGCAGATCCAGGTGCCATGT
CTCGTCCTTTTGGAGTAGCACTGTTATTTGGAGGCGTTGATGAGAAAGGACCCCAGCTGTTTCATATGGACCCATCTGGA
ACCTTTGTACAGTGTGATGCTCGAGCAATTGGCTCTGCTTCAGAGGGTGCCCAGAGCTCCTTGCAAGAAGTTTACCACAA
GTCTATGACACTGAAAGAAGCCATCAAGTCTTCACTCATCATCCTCAAACAAGTAATGGAGGAGAAGCTGAATGCAACTA
ACATAGAGCTAGCCACAGTGCAGCCTGGCCAGAATTTCCACATGTTCACAAAGGAAGAACTTGAAGAGGTTATCAAGGAC
ATTTAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP021940_synovial_membrane | 18 .50 RPM |
| SRP021940_embryo | 28 .10 RPM |
| SRP021940_cerebellum | 20 .67 RPM |
| SRP021940_testis | 34 .02 RPM |
| SRP021940_placental_villous | 28 .82 RPM |
| SRP021940_articular_cartilage | 10 .68 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Cavia porcellus | ENSCPOG00000013670 | ortholog_one2one | 1 retrogene | |
| Echinops telfairi | ENSETEG00000012916 | ortholog_one2one | 1 retrogene | |
| Mus musculus | ENSMUSG00000068749 | ortholog_one2many | 1 retrogene | |
| Ochotona princeps | ENSOPRG00000008863 | ortholog_one2one | 1 retrogene | |
| Rattus norvegicus | ENSRNOG00000019868 | ortholog_one2one | 2 retrogenes | |
| Sus scrofa | ENSSSCG00000006830 | ortholog_one2one | 2 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_ecab_1106 | 50.41 | 50.21 | Please wait, loading  | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSECAG00000011835 retrocopies