Parental gene:

TRAPPC13, ENSECAG00000011983

Aliases:None
Description:trafficking protein particle complex 13 [Source:HGNC Symbol;Acc:25828]
Organism:Horse (Equus caballus)
Coordinates:21:7934600..7956502(-)


>ENSECAG00000011983
GTGATGCGGTTGACTAAGCCTACTTTATTCACCAATATTCCAGTAACATGTGAAGAGAAAGACTTACCTGGAGATCTCTT
TAACCAACTCATGAGAGATGATCCTTCAACTGTAAATGGTGCAGAAATATTAATGTTGGGAGAAATGTTGACTTTACCAC
AGAATTTCGGGAATATATTTTTGGGAGAGACCTTTTCCAGTTATATCAGCGTTCATAATGATAGCAATCAAGTTGTAAAA
GACATATTGGTAAAAGCTGATCTTCAGACAAGTTCTCAACGTTTAAATCTTTCAGCCTCCAATGCTGCAGTGGCTGAACT
TAAACCTGATTGTTGTATTGATGATGTCATACACCATGAAGTAAAGGAAATTGGAACACACATCTTGGTGTGTGCAGTGA
GTTATACAACTCAGGGTGGAGAAAAAATGTATTTTAGAAAATTCTTCAAATTTCAGGTTCTCAAACCACTGGATGTGAAA
ACCAAATTTTACAATGCAGAGAGTGACCTCAATTCTGTGACTGATGAAGTGTTTCTGGAAGCCCAGATTCAGAATATTAC
AACCTCACCCATGTTTATGGAGAAAGTTTCATTGGAGCCATCTATAATGTATAATGTAGCAGAATTAAATTCAGTCAACC
AAGCTGGAGAATGTGTAACTACGTTTGGGTCAAGAGCATATTTGCAGCCAATGGATACACGCCAGTACTTGTACTGCCTA
AAGCCCAAGAAGGAGTTTGCAGAAAAAGCAGGCATCATTAAGGGAGTAACAGTAATTGGAAAATTGGATATAGTGTGGAA
AACAAATCTAGGTGAAAGGGGAAGATTACAGACCAGCCAACTTCAAAGAATGGCTCCAGGCTATGGAGATGTTAGGTTGT
CTTTGGAGGCAATCCCAGATACCGTAAACCTAGAAGAACCTTTTCATATTACCTGTAAAATAACAAACTGCAGTGAAAGG
ACTATGGATCTGGTTTTGGAAATGTGCAATACCAGTTCCATCCACTGGTGTGGTATTTCCGGAAGACAGCTCGGAAAGCT
GCATCCCAGTTCCTCTCTCTGCCTTGCCCTTACTCTGCTGTCTTCAGTCCAGGGACTGCAGAGCGTCTCCGGCTTAAGAC
TTACAGACACATTCTTAAAGAGAACATATGAATATGATGACATCGCACAAGTCTGTGTGGTATCTTCGGCCGTTAAAGTG
GAAAGCTGA

Library Parental gene expression (RPM)
SRP021940_synovial_membrane 4 .58 RPM
SRP021940_embryo 5 .04 RPM
SRP021940_cerebellum 5 .87 RPM
SRP021940_testis 2 .17 RPM
SRP021940_placental_villous 6 .88 RPM
SRP021940_articular_cartilage 3 .01 RPM



Species Parental gene accession Homology type Retrogenes number
Choloepus hoffmanni ENSCHOG00000006026 ortholog_one2one 1 retrogene
retro_chof_1834,
Dasypus novemcinctus ENSDNOG00000006386 ortholog_one2one 1 retrogene
retro_dnov_1288,
Pteropus vampyrus ENSPVAG00000008275 ortholog_one2one 1 retrogene
retro_pvam_980,
Sorex araneus ENSSARG00000000639 ortholog_one2one 1 retrogene
retro_sara_394,
Ictidomys tridecemlineatus ENSSTOG00000021318 ortholog_one2one 1 retrogene
retro_itri_1455,
Tarsius syrichta ENSTSYG00000004582 ortholog_one2one 1 retrogene
retro_tsyr_18,
Tursiops truncatus ENSTTRG00000006537 ortholog_one2one 1 retrogene
retro_ttru_1068,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ecab_1074 61.21 57.71
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Download FASTA sequences of all ENSECAG00000011983 retrocopies