Parental gene: | C4orf27, ENSECAG00000013735 |
| Aliases: | None |
| Description: | chromosome 4 open reading frame 27 [Source:HGNC Symbol;Acc:26051] |
| Organism: | Horse (Equus caballus) |
| Coordinates: | 2:65420274..65443309(+) |
>ENSECAG00000013735
ATGGTCGGAGGCGGCGGGAAGCGCCGGCCCGGCGGGGAGGGCCCGCAGTGTGAAAAAACAGTTGATGTGAAGAAGAGTAA
ATCGTGTGAAGCTGATGTCTCCAGTGACCTTCGAAAAGAAGTTGAAAATCATTATAAGCTTTCTCTACCTGAAGATTTCT
ATCACTTCTGGAAGTTCTGTGAAGAACTGGATCCTGAAAAGCCAGCTGATTCACTTTCCGCAAGCCTTGGTCTTCGATTA
GTGGGTCCTTATGATCTCCTTGCCGGAAAACATAAAATGAAGAAAAAATCAGCAAGCCTGAATTTTAACCTTCACTGGAG
GTTTTACTATGATCCACCTGAGTTCCAGACCATTATTATTGGAGATGATAAAACTCAATTCCACATGGGGTATTTCAGGG
ATTCTCCTGATGAACTTCCTGTATATGTTGGTACAAATGAAGCCAAGAAAAATTGTATAATTGTTCAAAATGGAGATAAT
GTGTTTGCTGCAGTCAAATTATTTTTGATGAAAAAACTTAAAGAAGTAACAGATAAAAAGAAAACTAGTCTCTTGAAAAA
CATAGATGAAAAACTCACAGCAGCAGCCAGAGAACTGGGGTACTCCCTGGAACAGAGAACGATGAAGATGAAACAGAGAG
ATAAGAAAGTTGTGACAAAGACCTTTCATGGTGCAGGCTTGGTTGTCCCAGTAGATAAAAATGATGTTGGGTACAGAGAG
CTCCCTGAAACAGATGCCAACCTCAAGAGAATTTGCAAGACAATTGTTGAGGCAGCAAGTGATGAGGAGAGGCTGAAAGC
TTTTGCTCCCATTCAGGAAATGATGACTTTCGTGCAGTTTGCTAATGATGAATGTGATTATGGCATGGGGCTTGAGTTGG
GAATGGACCTCTTTTGTTATGGTTCACACTATTTTCATAAAGTTGCTGGCCAGCTTTTACCTCTTGCATATAATCTGTTG
AAGAGGAATCTCTTTGCAGAAATTATTGAAGATCATCTGGCAAACAGAAGTAAAGAGAACATAGACCAACTTGCAGTATG
A
ATGGTCGGAGGCGGCGGGAAGCGCCGGCCCGGCGGGGAGGGCCCGCAGTGTGAAAAAACAGTTGATGTGAAGAAGAGTAA
ATCGTGTGAAGCTGATGTCTCCAGTGACCTTCGAAAAGAAGTTGAAAATCATTATAAGCTTTCTCTACCTGAAGATTTCT
ATCACTTCTGGAAGTTCTGTGAAGAACTGGATCCTGAAAAGCCAGCTGATTCACTTTCCGCAAGCCTTGGTCTTCGATTA
GTGGGTCCTTATGATCTCCTTGCCGGAAAACATAAAATGAAGAAAAAATCAGCAAGCCTGAATTTTAACCTTCACTGGAG
GTTTTACTATGATCCACCTGAGTTCCAGACCATTATTATTGGAGATGATAAAACTCAATTCCACATGGGGTATTTCAGGG
ATTCTCCTGATGAACTTCCTGTATATGTTGGTACAAATGAAGCCAAGAAAAATTGTATAATTGTTCAAAATGGAGATAAT
GTGTTTGCTGCAGTCAAATTATTTTTGATGAAAAAACTTAAAGAAGTAACAGATAAAAAGAAAACTAGTCTCTTGAAAAA
CATAGATGAAAAACTCACAGCAGCAGCCAGAGAACTGGGGTACTCCCTGGAACAGAGAACGATGAAGATGAAACAGAGAG
ATAAGAAAGTTGTGACAAAGACCTTTCATGGTGCAGGCTTGGTTGTCCCAGTAGATAAAAATGATGTTGGGTACAGAGAG
CTCCCTGAAACAGATGCCAACCTCAAGAGAATTTGCAAGACAATTGTTGAGGCAGCAAGTGATGAGGAGAGGCTGAAAGC
TTTTGCTCCCATTCAGGAAATGATGACTTTCGTGCAGTTTGCTAATGATGAATGTGATTATGGCATGGGGCTTGAGTTGG
GAATGGACCTCTTTTGTTATGGTTCACACTATTTTCATAAAGTTGCTGGCCAGCTTTTACCTCTTGCATATAATCTGTTG
AAGAGGAATCTCTTTGCAGAAATTATTGAAGATCATCTGGCAAACAGAAGTAAAGAGAACATAGACCAACTTGCAGTATG
A
| Library | Parental gene expression (RPM) |
|---|---|
| SRP021940_synovial_membrane | 4 .72 RPM |
| SRP021940_embryo | 11 .97 RPM |
| SRP021940_cerebellum | 6 .39 RPM |
| SRP021940_testis | 3 .64 RPM |
| SRP021940_placental_villous | 9 .43 RPM |
| SRP021940_articular_cartilage | 5 .19 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Bos taurus | ENSBTAG00000020132 | ortholog_one2one | 1 retrogene | |
| Gorilla gorilla | ENSGGOG00000003090 | possible_ortholog | 1 retrogene | |
| Myotis lucifugus | ENSMLUG00000017052 | ortholog_one2many | 1 retrogene | |
| Ictidomys tridecemlineatus | ENSSTOG00000001481 | possible_ortholog | 1 retrogene | |
| Tursiops truncatus | ENSTTRG00000009751 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_ecab_551 | 78.27 | 95.66 | Please wait, loading  | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSECAG00000013735 retrocopies