Parental gene:

U2AF1, ENSECAG00000015558

Aliases:None
Description:U2 small nuclear RNA auxiliary factor 1 [Source:HGNC Symbol;Acc:12453]
Organism:Horse (Equus caballus)
Coordinates:26:38481223..38490960(+)


>ENSECAG00000015558
AGAGTCAACTGTTCCTTCTATTTCAAAATTGGAGCATGTCGTCATGGAGACAGATGCTCTCGGTTGCACAATAAACCGAC
CTTTAGCCAGACCATTGCCCTCTTGAACATTTACCGTAACCCTCAAAACTCTTCCCAGTCTGCTGACGGTTTGCGCTGTG
CTGTGAGCGACGTCGAGATGCAGGAACACTATGATGAGTTTTTCGAGGAGGTTTTTACAGAAATGGAGGAGAAGTACGGT
GAAGTTGAGGAGATGAACGTCTGTGATAACCTTGGCGATCACCTCGTTGGAAATGTGTATGTCAAGTTTCGCCGTGAAGA
AGATGCGGAAAAGGCTGTGATTGACTTGAACAACCGCTGGTTTAACGGACAGCCGATCCATGCGGAGCTCTCTCCCGTGA
CCGACTTCAGAGAAGCCTGCTGCCGCCAGTATGAGATGGGAGAGTGCACACGAGGAGGCTTCTGCAACTTCATGCACCTG
AAGCCCATCTCGAGGGAGCTGCGGCGGGAGCTGTACGGGCGCCGGCGCAAGAAGCATAGATCGAGGTCCCGGTCTCGGGA
GCGTCGCTCGCGGTCTCGGGACCGTGGTCGCGGTGGTGGCGGCGGCGGCGGTGGAGGCGGTGGGGGACGGGAGCGTGACC
GGAGGCGGTCGAGAGATCGTGAAAGATCTGGGCGATTCTGA

Library Parental gene expression (RPM)
SRP021940_synovial_membrane 35 .19 RPM
SRP021940_embryo 65 .77 RPM
SRP021940_cerebellum 40 .92 RPM
SRP021940_testis 82 .81 RPM
SRP021940_placental_villous 40 .46 RPM
SRP021940_articular_cartilage 25 .80 RPM



Species Parental gene accession Homology type Retrogenes number
Homo sapiens ENSG00000160201 ortholog_one2one 2 retrogenes
retro_hsap_1478, retro_hsap_790,
Loxodonta africana ENSLAFG00000011460 ortholog_one2one 1 retrogene
retro_lafr_1135,
Macaca mulatta ENSMMUG00000022769 ortholog_one2one 2 retrogenes
retro_mmul_1071, retro_mmul_2126,
Mus musculus ENSMUSG00000061613 ortholog_one2one 3 retrogenes
retro_mmus_1602, retro_mmus_1787, retro_mmus_2955,
Nomascus leucogenys ENSNLEG00000014737 ortholog_one2one 1 retrogene
retro_nleu_2382,
Otolemur garnettii ENSOGAG00000016504 ortholog_one2many 1 retrogene
retro_ogar_241,
Pongo abelii ENSPPYG00000011463 ortholog_one2one 2 retrogenes
retro_pabe_1227, retro_pabe_703,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ecab_1081 80.00 50.44
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Download FASTA sequences of all ENSECAG00000015558 retrocopies