Parental gene: | ENSECAG00000016527 |
| Aliases: | None |
| Description: | None |
| Organism: | Horse (Equus caballus) |
| Coordinates: | 14:51724784..51727206(-) |
>ENSECAG00000016527
AATGAAACAGAAATAAATAATCTACCTGACAAAGAGTTCAAACAGAAAGTTATAAGAATGCTTACTGATCTTGGGAGAAG
AATGGATGAACCCAGTGGGAACTTCAACAAAGAACTGGAAAATATAAAAAAGAACCAATCAAAGAATAAACACAGATTGA
AACAAAAAACAACCCACCAATTGGGAAAAAATATTTGCAAGGACTCAATAGCCCAAGAACGGACCAACAAACTGGACAAA
AGACTAGAGGAAATCACCCAAGCTGACCAGATAAAAGAAAAAAGAATTAAAAAGAATGAGGACGGATTAAGAGACCTCTG
GAACAACATCAAGCACACTAACATTCATATTATAGATGTCCCAGAAGGAGAAGAGAGAGACAAAGGGGCAGAGAATCTAT
TTGGAGAAATAATAGCTGAAAATTTTCCTAACCTAAGAAGGAAATATCCAGGTGAAGCACAGAGAGCACCGAACAAGATA
AACCCAAAGAGGCCCACACCAAGACACATTATAATTAAAATGTCCAAAAGTAAAGATAAAGAGAGAATCCTAAATGCCCT
AAGAGAAAGGCAACAAGTTACATACAAAGGAAATCCCATAAGACTATCAGCTAACTTCTCAGCAGAAACCTTAGAGACTA
GAAGGGAGTGGCATGATATATTGAAAGTGCTGAAAGGAAAAAACCTACAGCCAAGAATACTCTATTCAGCAAGGTTATCA
TTCATGGAAGGAGAGATAGAGTTCCCAGACAAGCAAAACCTAGAAGAGTTTATCACCAAGAAGCCAGCATTACAGGAAAT
GTTAAACGGACTTATTTAA
AATGAAACAGAAATAAATAATCTACCTGACAAAGAGTTCAAACAGAAAGTTATAAGAATGCTTACTGATCTTGGGAGAAG
AATGGATGAACCCAGTGGGAACTTCAACAAAGAACTGGAAAATATAAAAAAGAACCAATCAAAGAATAAACACAGATTGA
AACAAAAAACAACCCACCAATTGGGAAAAAATATTTGCAAGGACTCAATAGCCCAAGAACGGACCAACAAACTGGACAAA
AGACTAGAGGAAATCACCCAAGCTGACCAGATAAAAGAAAAAAGAATTAAAAAGAATGAGGACGGATTAAGAGACCTCTG
GAACAACATCAAGCACACTAACATTCATATTATAGATGTCCCAGAAGGAGAAGAGAGAGACAAAGGGGCAGAGAATCTAT
TTGGAGAAATAATAGCTGAAAATTTTCCTAACCTAAGAAGGAAATATCCAGGTGAAGCACAGAGAGCACCGAACAAGATA
AACCCAAAGAGGCCCACACCAAGACACATTATAATTAAAATGTCCAAAAGTAAAGATAAAGAGAGAATCCTAAATGCCCT
AAGAGAAAGGCAACAAGTTACATACAAAGGAAATCCCATAAGACTATCAGCTAACTTCTCAGCAGAAACCTTAGAGACTA
GAAGGGAGTGGCATGATATATTGAAAGTGCTGAAAGGAAAAAACCTACAGCCAAGAATACTCTATTCAGCAAGGTTATCA
TTCATGGAAGGAGAGATAGAGTTCCCAGACAAGCAAAACCTAGAAGAGTTTATCACCAAGAAGCCAGCATTACAGGAAAT
GTTAAACGGACTTATTTAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP021940_synovial_membrane | 0 .00 RPM |
| SRP021940_embryo | 0 .00 RPM |
| SRP021940_cerebellum | 0 .00 RPM |
| SRP021940_testis | 0 .00 RPM |
| SRP021940_placental_villous | 0 .00 RPM |
| SRP021940_articular_cartilage | 0 .00 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Equus caballus | ENSECAG00000010030 | within_species_paralog | 21 retrogenes |
retro_ecab_1021, retro_ecab_1023, retro_ecab_1035, retro_ecab_1071, retro_ecab_1089, retro_ecab_136, retro_ecab_182, retro_ecab_201, retro_ecab_281, retro_ecab_306, retro_ecab_486, retro_ecab_521, retro_ecab_537, retro_ecab_582, retro_ecab_590, retro_ecab_658, retro_ecab_670, retro_ecab_722, retro_ecab_786, retro_ecab_974, retro_ecab_996,
|
| Equus caballus | ENSECAG00000020332 | within_species_paralog | 9 retrogenes | |
| Equus caballus | ENSECAG00000022034 | within_species_paralog | 4 retrogenes | |
| Equus caballus | ENSECAG00000023806 | within_species_paralog | 15 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_ecab_214 | 60.71 | 100.00 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_ecab_642 | 57.61 | 98.90 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_ecab_879 | 58.40 | 86.03 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_ecab_888 | 61.36 | 95.59 | Please wait, loading | Please wait, loading | Please wait, loading |
| 5. | retro_ecab_993 | 58.09 | 86.76 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSECAG00000016527 retrocopies